Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010963.1

Orthogroup ID

OG0002351

Physical Location & Seq

Genomic Coordinates Reverse (-)

15229 .. 16239

Gene Structure 1011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010963.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

atgttcttcaacacatctgttggaatacgcctggtgaaaccagcggggcatgaaactggggcagtggcgggcgccctcatcaccgccggagactctcatgctgagttagaggaggcccttggtggaggcctcgtggatgcggcactcggtgctctcataccactcattgccgtcgatgatggcgtcgccgggctccatgtaggccgaaagggcggcgatggttccgccagtttcaccatggttccatctctaattgagttcacgacttcctcaaattcaccaaactccgaaccccaaattaagctaagcccatcaattccgaccgtcgtagatgaaatccacaaggaaaaccccaaattctctccctttattcaacaattctaccaaccaatgcaagctcgggtcgacccgcctctcgaatccatctgggtctacaccgcattgacatttcggagccgaaaccacctgaaaggcgacatcttggatcgaatcgcagccgcaaaggacttgtttcagctactctcctcttgctcagctccctactgttgctcaaaaagattcgcgctgctcattcaggtggtgcggttggcacacgacgttgttttggatttgtttaagaaggacttggggttgaagaaagagaagaaagtgacgaagaaggtgaagaatttggtgggagtgattatggggtttataagtgtgtgctgttctagcagggatttgggtcaagaggatcctttgattgattcgagttcgggttggtctttttcgagtttaagttttgtttggttgaacagagatgagaatgttaggaatttgttaccattagtgagtgaggaggtgattgatgggctcagtgagagagatggggatatgagttacttggctggagttgttattgcagaggttttttttgttgagactgtgcttgaattgcaaagctgggacttcaggggaggtgttgaagacagagttgaggacttgggctgtcaacaggggcgcttgccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

336

Amino Acids

36.51

Weight (kDa)

5.09

Isoelectric Point (pI)

38.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11780
fragaria_vesca	FvH4_1g07060
malus_domestica	MD02G1074500.v1.1
prunus_persica	Prupe.7G213400_v2.0.a1
pyrus_communis	pycom02g05890 pycom15g18070
rosa_chinensis	RchiOBHm_Chr2g0092961 RchiOBHm_Chr4g0406051 RchiOBHm_Chr4g0425381
rosa_laevigata	RLG00000008045 RLG00000016353 RLG00000020789 RLG00000033390
rosa_multiflora	Rmu_co8270331.1_g000001 Rmu_sc0000596.1_g000010 Rmu_sc0000965.1_g000017 Rmu_sc0002862.1_g000003 Rmu_sc0002882.1_g000032 Rmu_sc0003902.1_g000018 Rmu_sc0006662.1_g000006 Rmu_sc0010963.1_g000006 Rmu_sc0012535.1_g000006
rosa_roxburghii	Rroxscaffold_2G00148670
rosa_rugosa	Rorug02G0030700
rosa_samantha	Rh1DG034900 Rh2AG076700 Rh2BG078000 Rh2CG080200 Rh2DG075300 Rh2DG566700 Rh3BG038800 Rh3CG266800 Rh3DG038000 Rh3DG262900 Rh6AG284700 Rh6BG048400 Rh6BG286100 Rh6CG287100 Rh7AG478700
rosa_wichuraiana	Rw2G006950 Rw3G003880 Rw3G021260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	695
AccB1I	GGYRCC	1 cut(s)	71
AccI	GTMKAC	2 cut(s)	405, 432
AccII	CGCG	1 cut(s)	563
AclWI	GGATC	3 cut(s)	492, 728, 741
AcsI	RAATTY	4 cut(s)	274, 356, 667, 814
AcuI	CTGAAG	1 cut(s)	934
AcyI	GRCGYC	2 cut(s)	72, 183
AdeI	CACNNNGTG	1 cut(s)	149
AgsI	TTSAA	6 cut(s)	10, 374, 634, 793, 932, 965
AjnI	CCWGG	1 cut(s)	30
AluBI	AGCT	5 cut(s)	304, 398, 517, 536, 942
AluI	AGCT	5 cut(s)	304, 398, 517, 536, 942
Alw21I	GWGCWC	1 cut(s)	154
Alw26I	GTCTC	2 cut(s)	84, 914
AlwI	GGATC	3 cut(s)	492, 728, 741
Ama87I	CYCGRG	1 cut(s)	399
AoxI	GGCC	3 cut(s)	114, 127, 202
ApeKI	GCWGC	2 cut(s)	494, 565
ApoI	RAATTY	4 cut(s)	274, 356, 667, 814
AspLEI	GCGC	3 cut(s)	74, 565, 1002
AspS9I	GGNCC	1 cut(s)	115
AsuC2I	CCSGG	1 cut(s)	190
AsuHPI	GGTGA	6 cut(s)	46, 73, 226, 270, 673, 853
AvaI	CYCGRG	1 cut(s)	399
BamHI	GGATCC	1 cut(s)	733
BanI	GGYRCC	1 cut(s)	71
BanII	GRGCYC	2 cut(s)	195, 855
BauI	CACGAG	1 cut(s)	131
BbsI	GAAGAC	1 cut(s)	972
Bbv12I	GWGCWC	1 cut(s)	154
BbvI	GCAGC	2 cut(s)	506, 552
BccI	CCATC	7 cut(s)	173, 212, 253, 319, 431, 842, 860
BceAI	ACGGC	1 cut(s)	155
BciT130I	CCWGG	1 cut(s)	32
BcnI	CCSGG	1 cut(s)	190
BcoDI	GTCTC	2 cut(s)	84, 914
BfaI	CTAG	1 cut(s)	711
BfoI	RGCGCY	2 cut(s)	75, 1003
BglI	GCCNNNNNGGC	1 cut(s)	210
BisI	GCNGC	5 cut(s)	141, 214, 495, 498, 566
BlpI	GCTNAGC	2 cut(s)	305, 532
BlsI	GCNGC	5 cut(s)	142, 215, 496, 499, 567
Bme1390I	CCNGG	2 cut(s)	32, 190
BmeT110I	CYCGRG	1 cut(s)	399
BmgT120I	GGNCC	1 cut(s)	115
BmiI	GGNNCC	6 cut(s)	73, 194, 223, 243, 455, 735
BmrFI	CCNGG	2 cut(s)	32, 190
BmrI	ACTGGG	1 cut(s)	66
BmsI	GCATC	1 cut(s)	127
BmuI	ACTGGG	1 cut(s)	66
BpiI	GAAGAC	1 cut(s)	972
BpmI	CTGGAG	1 cut(s)	909
Bpu1102I	GCTNAGC	2 cut(s)	305, 532
BpuMI	CCSGG	1 cut(s)	190
BsaHI	GRCGYC	2 cut(s)	72, 183
BsaJI	CCNNGG	2 cut(s)	118, 237
BsaXI	ACNNNNNCTCC	2 cut(s)	117, 147
Bse1I	ACTGG	2 cut(s)	61, 228
Bse3DI	GCAATG	1 cut(s)	165
BseBI	CCWGG	1 cut(s)	32
BseDI	CCNNGG	2 cut(s)	118, 237
BseGI	GGATG	1 cut(s)	142
BseMI	GCAATG	1 cut(s)	165
BseMII	CTCAG	3 cut(s)	93, 546, 868
BseNI	ACTGG	2 cut(s)	61, 228
BseRI	GAGGAG	3 cut(s)	125, 514, 851
BseXI	GCAGC	2 cut(s)	506, 552
BseYI	CCCAGC	1 cut(s)	942
Bsh1236I	CGCG	1 cut(s)	563
Bsh1285I	CGRYCG	1 cut(s)	324
BshFI	GGCC	3 cut(s)	116, 129, 204
BshNI	GGYRCC	1 cut(s)	71
BsiEI	CGRYCG	1 cut(s)	324
BsiHKAI	GWGCWC	1 cut(s)	154
BsiHKCI	CYCGRG	1 cut(s)	399
BsiSI	CCGG	2 cut(s)	87, 189
BslFI	GGGAC	1 cut(s)	959
BsmAI	GTCTC	2 cut(s)	84, 914
BsmFI	GGGAC	1 cut(s)	959
BsnI	GGCC	3 cut(s)	116, 129, 204
BsoBI	CYCGRG	1 cut(s)	399
Bsp1286I	GDGCHC	3 cut(s)	154, 195, 855
Bsp143I	GATC	2 cut(s)	484, 733
Bsp1720I	GCTNAGC	2 cut(s)	305, 532
Bsp19I	CCATGG	1 cut(s)	237
BspANI	GGCC	3 cut(s)	116, 129, 204
BspCNI	CTCAG	3 cut(s)	94, 545, 867
BspFNI	CGCG	1 cut(s)	563
BspLI	GGNNCC	6 cut(s)	73, 194, 223, 243, 455, 735
BspPI	GGATC	3 cut(s)	492, 728, 741
BspT107I	GGYRCC	1 cut(s)	71
BsrDI	GCAATG	1 cut(s)	165
BsrI	ACTGG	2 cut(s)	61, 228
BssECI	CCNNGG	2 cut(s)	118, 237
BssMI	GATC	2 cut(s)	484, 733
BssNI	GRCGYC	2 cut(s)	72, 183
BssSI	CACGAG	1 cut(s)	131
BssT1I	CCWWGG	2 cut(s)	118, 237
Bst2BI	CACGAG	1 cut(s)	131
Bst2UI	CCWGG	1 cut(s)	32
Bst4CI	ACNGT	3 cut(s)	325, 545, 925
BstACI	GRCGYC	2 cut(s)	72, 183
BstAPI	GCANNNNNTGC	1 cut(s)	149
BstC8I	GCNNGC	3 cut(s)	70, 396, 1004
BstDEI	CTNAG	4 cut(s)	102, 305, 532, 854
BstDSI	CCRYGG	1 cut(s)	237
BstF5I	GGATG	1 cut(s)	142
BstFNI	CGCG	1 cut(s)	563
BstH2I	RGCGCY	2 cut(s)	75, 1003
BstHHI	GCGC	3 cut(s)	74, 565, 1002
BstKTI	GATC	2 cut(s)	487, 736
BstMAI	GTCTC	2 cut(s)	84, 914
BstMBI	GATC	2 cut(s)	484, 733
BstMCI	CGRYCG	1 cut(s)	324
BstMWI	GCNNNNNNNGC	4 cut(s)	149, 210, 711, 934
BstNI	CCWGG	1 cut(s)	32
BstSCI	CCNGG	2 cut(s)	30, 188
BstUI	CGCG	1 cut(s)	563
BstV1I	GCAGC	2 cut(s)	506, 552
BstV2I	GAAGAC	1 cut(s)	972
BstX2I	RGATCY	1 cut(s)	733
BstYI	RGATCY	1 cut(s)	733
BsuRI	GGCC	3 cut(s)	116, 129, 204
BtgI	CCRYGG	1 cut(s)	237
BtgZI	GCGATG	1 cut(s)	231
BtsCI	GGATG	1 cut(s)	142
BtsI	GCAGTG	1 cut(s)	69
BtsIMutI	CAGTG	2 cut(s)	69, 862
Cac8I	GCNNGC	3 cut(s)	70, 396, 1004
CfoI	GCGC	3 cut(s)	74, 565, 1002
Cfr13I	GGNCC	1 cut(s)	115
CseI	GACGC	1 cut(s)	172
CviAII	CATG	4 cut(s)	50, 98, 197, 238
DdeI	CTNAG	4 cut(s)	102, 305, 532, 854
DinI	GGCGCC	1 cut(s)	73
DpnI	GATC	2 cut(s)	486, 735
DpnII	GATC	2 cut(s)	484, 733
DraIII	CACNNNGTG	1 cut(s)	149
EciI	GGCGGA	1 cut(s)	214
Eco130I	CCWWGG	2 cut(s)	118, 237
Eco147I	AGGCCT	1 cut(s)	129
Eco24I	GRGCYC	2 cut(s)	195, 855
Eco57I	CTGAAG	1 cut(s)	934
Eco88I	CYCGRG	1 cut(s)	399
EcoO109I	RGGNCCY	1 cut(s)	115
EcoRII	CCWGG	1 cut(s)	30
EcoT14I	CCWWGG	2 cut(s)	118, 237
EcoT38I	GRGCYC	2 cut(s)	195, 855
EgeI	GGCGCC	1 cut(s)	73
EheI	GGCGCC	1 cut(s)	73
ErhI	CCWWGG	2 cut(s)	118, 237
FaeI	CATG	4 cut(s)	53, 101, 200, 241
FaiI	YATR	8 cut(s)	51, 99, 158, 198, 239, 686, 695, 875
FalI	AAGNNNNNCTT	2 cut(s)	608, 640
FaqI	GGGAC	1 cut(s)	959
FatI	CATG	4 cut(s)	49, 97, 196, 237
FauI	CCCGC	3 cut(s)	37, 61, 417
FblI	GTMKAC	2 cut(s)	405, 432
Fnu4HI	GCNGC	5 cut(s)	141, 214, 495, 498, 566
FokI	GGATG	1 cut(s)	149
FriOI	GRGCYC	2 cut(s)	195, 855
Fsp4HI	GCNGC	5 cut(s)	141, 214, 495, 498, 566
FspBI	CTAG	1 cut(s)	711
GlaI	GCGC	3 cut(s)	73, 564, 1001
GluI	GCNGC	5 cut(s)	141, 214, 495, 498, 566
GsaI	CCCAGC	1 cut(s)	946
GsuI	CTGGAG	1 cut(s)	909
HaeII	RGCGCY	2 cut(s)	75, 1003
HaeIII	GGCC	3 cut(s)	116, 129, 204
HapII	CCGG	2 cut(s)	87, 189
HgaI	GACGC	1 cut(s)	172
HhaI	GCGC	3 cut(s)	74, 565, 1002
Hin1I	GRCGYC	2 cut(s)	72, 183
Hin1II	CATG	4 cut(s)	53, 101, 200, 241
Hin6I	GCGC	3 cut(s)	72, 563, 1000
HinP1I	GCGC	3 cut(s)	72, 563, 1000
HincII	GTYRAC	2 cut(s)	406, 992
HindII	GTYRAC	2 cut(s)	406, 992
HinfI	GANTC	5 cut(s)	92, 419, 489, 558, 746
HpaII	CCGG	2 cut(s)	87, 189
HphI	GGTGA	6 cut(s)	46, 73, 226, 270, 673, 853
Hpy166II	GTNNAC	4 cut(s)	261, 406, 433, 992
Hpy188I	TCNGA	3 cut(s)	289, 321, 453
Hpy188III	TCNNGA	3 cut(s)	262, 416, 728
Hpy8I	GTNNAC	4 cut(s)	261, 406, 433, 992
Hpy99I	CGWCG	4 cut(s)	176, 188, 329, 599
HpyAV	CCTTC	2 cut(s)	613, 652
HpyCH4III	ACNGT	3 cut(s)	325, 545, 925
HpyCH4IV	ACGT	1 cut(s)	597
HpyCH4V	TGCA	3 cut(s)	394, 902, 937
HpyF10VI	GCNNNNNNNGC	4 cut(s)	149, 210, 711, 934
HpyF3I	CTNAG	4 cut(s)	102, 305, 532, 854
HpySE526I	ACGT	1 cut(s)	597
Hsp92I	GRCGYC	2 cut(s)	72, 183
Hsp92II	CATG	4 cut(s)	53, 101, 200, 241
HspAI	GCGC	3 cut(s)	72, 563, 1000
KasI	GGCGCC	1 cut(s)	71
Kzo9I	GATC	2 cut(s)	484, 733
LmnI	GCTCC	3 cut(s)	198, 453, 541
Lsp1109I	GCAGC	2 cut(s)	506, 552
LweI	GCATC	1 cut(s)	127
MaeI	CTAG	1 cut(s)	711
MaeII	ACGT	1 cut(s)	597
MaeIII	GTNAC	3 cut(s)	649, 819, 878
MalI	GATC	2 cut(s)	486, 735
MboI	GATC	2 cut(s)	484, 733
MboII	GAAGA	5 cut(s)	646, 655, 667, 676, 977
MflI	RGATCY	1 cut(s)	733
MhlI	GDGCHC	3 cut(s)	154, 195, 855
MluCI	AATT	9 cut(s)	252, 274, 297, 315, 356, 377, 667, 814, 932
Mly113I	GGCGCC	1 cut(s)	72
MlyI	GAGTC	1 cut(s)	86
MmeI	TCCRAC	1 cut(s)	344
MseI	TTAA	3 cut(s)	300, 615, 776
MslI	CAYNNNNRTG	1 cut(s)	575
MspA1I	CMGCKG	1 cut(s)	44
MspI	CCGG	2 cut(s)	87, 189
MspR9I	CCNGG	2 cut(s)	32, 190
MvaI	CCWGG	1 cut(s)	32
MvnI	CGCG	1 cut(s)	563
MwoI	GCNNNNNNNGC	4 cut(s)	149, 210, 711, 934
NarI	GGCGCC	1 cut(s)	72
NciI	CCSGG	1 cut(s)	190
NcoI	CCATGG	1 cut(s)	237
NdeII	GATC	2 cut(s)	484, 733
NlaIII	CATG	4 cut(s)	53, 101, 200, 241
NlaIV	GGNNCC	6 cut(s)	73, 194, 223, 243, 455, 735
NmuCI	GTSAC	1 cut(s)	649
PceI	AGGCCT	1 cut(s)	129
PcsI	WCGNNNNNNNCGW	1 cut(s)	180
PfeI	GAWTC	4 cut(s)	419, 489, 558, 746
PkrI	GCNGC	5 cut(s)	142, 215, 496, 499, 567
PleI	GAGTC	1 cut(s)	86
PluTI	GGCGCC	1 cut(s)	75
PpsI	GAGTC	1 cut(s)	86
PsiI	TTATAA	1 cut(s)	695
Psp6I	CCWGG	1 cut(s)	30
PspFI	CCCAGC	1 cut(s)	942
PspGI	CCWGG	1 cut(s)	30
PspN4I	GGNNCC	6 cut(s)	73, 194, 223, 243, 455, 735
PspPI	GGNCC	1 cut(s)	115
PsuI	RGATCY	1 cut(s)	733
RseI	CAYNNNNRTG	1 cut(s)	575
SalI	GTCGAC	1 cut(s)	404
SaqAI	TTAA	3 cut(s)	300, 615, 776
SatI	GCNGC	5 cut(s)	141, 214, 495, 498, 566
Sau3AI	GATC	2 cut(s)	484, 733
Sau96I	GGNCC	1 cut(s)	115
SchI	GAGTC	1 cut(s)	86
ScrFI	CCNGG	2 cut(s)	32, 190
SduI	GDGCHC	3 cut(s)	154, 195, 855
SfaNI	GCATC	1 cut(s)	127
SfoI	GGCGCC	1 cut(s)	73
SmiMI	CAYNNNNRTG	1 cut(s)	575
Sse9I	AATT	9 cut(s)	252, 274, 297, 315, 356, 377, 667, 814, 932
SseBI	AGGCCT	1 cut(s)	129
SspDI	GGCGCC	1 cut(s)	71
SspMI	CTAG	1 cut(s)	711
StuI	AGGCCT	1 cut(s)	129
StyD4I	CCNGG	2 cut(s)	30, 188
StyI	CCWWGG	2 cut(s)	118, 237
TaaI	ACNGT	3 cut(s)	325, 545, 925
TaiI	ACGT	1 cut(s)	600
TaqI	TCGA	6 cut(s)	174, 405, 417, 487, 749, 770
TasI	AATT	9 cut(s)	252, 274, 297, 315, 356, 377, 667, 814, 932
TauI	GCSGC	3 cut(s)	143, 216, 500
TfiI	GAWTC	4 cut(s)	419, 489, 558, 746
Tru1I	TTAA	3 cut(s)	300, 615, 776
Tru9I	TTAA	3 cut(s)	300, 615, 776
TscAI	CASTG	2 cut(s)	69, 862
TseFI	GTSAC	1 cut(s)	649
TseI	GCWGC	2 cut(s)	494, 565
Tsp45I	GTSAC	1 cut(s)	649
TspDTI	ATGAA	2 cut(s)	66, 348
TspRI	CASTG	2 cut(s)	69, 862
XapI	RAATTY	4 cut(s)	274, 356, 667, 814
XcmI	CCANNNNNNNNNTGG	1 cut(s)	235
XmiI	GTMKAC	2 cut(s)	405, 432
XspI	CTAG	1 cut(s)	711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.