RchiOBHm_Chr2g0092961

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0002351
Physical Location & Seq
Forward (+)
6363700 .. 6366276
2577 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46803

Sequence Viewer

Length: 1470 bp
ATGGTTCCATCTCTAATCGAGTTCACGACTTCCTCAAATCCACCAAACTCCGAACTCCAAATTAAGCTAAGCCCATCAATTCAGACCGTTGTGGATGAAATCCACAAGGAAAACCCCAAACTCTCTCCCTTGATTCAACAATTCTACCAACCAATGCAAGCTCGGGTCGACCCGCCTCTCGAATCCATCTGGGTCTACACCGCATTGACATTTCGGAGCCGGAACCACCCAAAAGGCGACATCTTGGACCGAATCGCCGCCGCAAAGGACTTGTTTCAGCTGCTCTCCTCTTGCTCAGCTCCCTGCGGTTCCTCAAAGAGCGTCGCGCTGCTCGCTCCGGTGGTGCGGTTGGCACACGACGTCGTTTTGGATTTGTTTAAGAGGGACTTGGGGTTGAAGAAAGTGATGAAGGAGGTGAAGAATTTGGTGGGAGTGATTCTGGGGTTTATAAATGTGTGCTGTTCTGGCAGGGATTCGGGTCAGGAGGAACCTTTGATTGATTCGAGTTCGGGTTGGTCTTTTTCAGGTTTAAGTTGTGTTTGGTTGGACAGAGATGAGAATGTTAGGAATTTGTTACCTTTAGTGAGTGAGGAGGTGATTGGTGGGCTTACTGAGAGATATGGGGATGTGAGTTACTTGGCTGGAGTTGTTATTGCAGAGGTTTTTTTGTTGAGACTGTGCTTGAATTGCAAAGCTGGGACTTCAGGGGAGGTGTTGGAGACAGAGTTGAGGACTTGGGCTGTTGGTTCCATTACTGGGTTCCAGAATGTTTACGTTTTCGAGGTCCTTTTGAGGATGCTGCTGGAGAAGACTTTGCCTGTTACCTCCCTTTTGAGTTCTGAAGACGAAGTTTTGTTGAGGAAAGCGCTGTATGATGCCATCATATTGGTCGAATATTCTTTCCTTAATCCTGAGAAAGCAATTCACATATCTGCTGAGCACATGAAAATGATTGCCATGAGAAGATTGATTCTTGCCCATGAAGCAGTGGAGTATTTTAGGGAGCATGGTGATCAAAGGAGAAGCATCTCTTTTACAACTGCATTTTCCAGTTCACAATTGTATTCCCAAGTGGTTAAATGGGTAAGGAGTCAGATTCCTGTGGAGGATAGCTTGGTCAAATCAAAGGGAACCTCACCCAAAGCTCTTATAAAATGGCTTCTTAACCTCGAGCGTCGAGGCTTCTTAGTGTTTGGTGATAGTATCTTGAAGTATCATAGTCTTGATATGTCTAAACCACCAGCTTCGAAGTTAGACAGCAATGAAGTTGATGAAGACCCTATCTTTTACATCGATAAGAAGAGGCGAGGAGAACATACAGATGATGGAGAAGTTAATGAATACATTAGTGCTGCATTTTTAGCTGCTGCCAATACAATGACATCAGCGGAGAAAAGAGGGAAAAAACGGAAAGGGGAAAGCAGCGAGAGTGAAGAGGAGAGTTCACTCTCTGATGAGGACTCGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

489

Amino Acids

54.6

Weight (kDa)

5.44

Isoelectric Point (pI)

50.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 449, 1151
AatII GACGTC 1 cut(s) 363
AccI GTMKAC 2 cut(s) 168, 195
AccII CGCG 1 cut(s) 326
AciI CCGC 7 cut(s) 173, 201, 258, 261, 306, 346, 1388
AcsI RAATTY 2 cut(s) 421, 568
AcuI CTGAAG 2 cut(s) 687, 861
AcyI GRCGYC 1 cut(s) 360
AfeI AGCGCT 1 cut(s) 867
AfiI CCNNNNNNNGG 1 cut(s) 756
AgsI TTSAA 4 cut(s) 137, 397, 685, 1210
AluBI AGCT 9 cut(s) 67, 161, 280, 299, 695, 1113, 1145, 1244, 1364
AluI AGCT 9 cut(s) 67, 161, 280, 299, 695, 1113, 1145, 1244, 1364
Alw21I GWGCWC 1 cut(s) 942
Alw26I GTCTC 2 cut(s) 667, 713
Ama87I CYCGRG 2 cut(s) 162, 1169
Aor51HI AGCGCT 1 cut(s) 867
ApeKI GCWGC 7 cut(s) 280, 328, 799, 1352, 1364, 1367, 1422
ApoI RAATTY 2 cut(s) 421, 568
AspLEI GCGC 2 cut(s) 328, 868
AspS9I GGNCC 2 cut(s) 247, 784
AsuHPI GGTGA 5 cut(s) 427, 607, 1022, 1128, 1208
AsuII TTCGAA 1 cut(s) 1247
AvaI CYCGRG 2 cut(s) 162, 1169
AvaII GGWCC 2 cut(s) 247, 784
BbsI GAAGAC 3 cut(s) 815, 849, 1281
Bbv12I GWGCWC 1 cut(s) 942
BbvI GCAGC 7 cut(s) 267, 315, 786, 1339, 1351, 1354, 1434
BccI CCATC 5 cut(s) 16, 82, 194, 887, 1319
BclI TGATCA 1 cut(s) 1012
BcoDI GTCTC 2 cut(s) 667, 713
BfoI RGCGCY 1 cut(s) 869
BisI GCNGC 9 cut(s) 258, 261, 281, 329, 800, 1353, 1365, 1368, 1423
BlpI GCTNAGC 3 cut(s) 68, 295, 936
BlsI GCNGC 9 cut(s) 259, 262, 282, 330, 801, 1354, 1366, 1369, 1424
Bme18I GGWCC 2 cut(s) 247, 784
BmeT110I CYCGRG 2 cut(s) 162, 1169
BmgT120I GGNCC 2 cut(s) 247, 784
BmiI GGNNCC 8 cut(s) 6, 218, 224, 310, 489, 748, 761, 1132
BmrI ACTGGG 1 cut(s) 765
BmsI GCATC 3 cut(s) 786, 865, 1035
BmuI ACTGGG 1 cut(s) 765
BpiI GAAGAC 3 cut(s) 815, 849, 1281
BpmI CTGGAG 2 cut(s) 663, 824
Bpu1102I GCTNAGC 3 cut(s) 68, 295, 936
Bpu14I TTCGAA 1 cut(s) 1247
Bsa29I ATCGAT 1 cut(s) 1293
BsaHI GRCGYC 1 cut(s) 360
BsaWI WCCGGW 1 cut(s) 337
BsaXI ACNNNNNCTCC 2 cut(s) 710, 740
Bsc4I CCNNNNNNNGG 1 cut(s) 756
Bse1I ACTGG 2 cut(s) 760, 1050
Bse3DI GCAATG 1 cut(s) 1267
BseCI ATCGAT 1 cut(s) 1293
BseGI GGATG 3 cut(s) 100, 631, 801
BseLI CCNNNNNNNGG 1 cut(s) 756
BseMI GCAATG 1 cut(s) 1267
BseMII CTCAG 4 cut(s) 309, 603, 903, 927
BseNI ACTGG 2 cut(s) 760, 1050
BseRI GAGGAG 4 cut(s) 277, 605, 1323, 1451
BseXI GCAGC 7 cut(s) 267, 315, 786, 1339, 1351, 1354, 1434
BseYI CCCAGC 1 cut(s) 695
Bsh1236I CGCG 1 cut(s) 326
BshVI ATCGAT 1 cut(s) 1293
BsiHKAI GWGCWC 1 cut(s) 942
BsiHKCI CYCGRG 2 cut(s) 162, 1169
BsiSI CCGG 2 cut(s) 220, 338
BslFI GGGAC 2 cut(s) 398, 712
BslI CCNNNNNNNGG 1 cut(s) 756
BsmAI GTCTC 2 cut(s) 667, 713
BsmFI GGGAC 2 cut(s) 398, 712
BsoBI CYCGRG 2 cut(s) 162, 1169
Bsp119I TTCGAA 1 cut(s) 1247
Bsp1286I GDGCHC 1 cut(s) 942
Bsp143I GATC 1 cut(s) 1012
Bsp1720I GCTNAGC 3 cut(s) 68, 295, 936
BspACI CCGC 7 cut(s) 173, 201, 258, 261, 306, 346, 1388
BspCNI CTCAG 4 cut(s) 308, 604, 904, 928
BspDI ATCGAT 1 cut(s) 1293
BspFNI CGCG 1 cut(s) 326
BspLI GGNNCC 8 cut(s) 6, 218, 224, 310, 489, 748, 761, 1132
BspT104I TTCGAA 1 cut(s) 1247
BsrDI GCAATG 1 cut(s) 1267
BsrI ACTGG 2 cut(s) 760, 1050
BssMI GATC 1 cut(s) 1012
BssNI GRCGYC 1 cut(s) 360
Bst4CI ACNGT 2 cut(s) 88, 678
Bst6I CTCTTC 2 cut(s) 1295, 1428
BstACI GRCGYC 1 cut(s) 360
BstBI TTCGAA 1 cut(s) 1247
BstC8I GCNNGC 2 cut(s) 159, 333
BstDEI CTNAG 6 cut(s) 68, 295, 612, 912, 936, 1186
BstF5I GGATG 3 cut(s) 100, 631, 801
BstFNI CGCG 1 cut(s) 326
BstH2I RGCGCY 1 cut(s) 869
BstHHI GCGC 2 cut(s) 328, 868
BstKTI GATC 1 cut(s) 1015
BstMAI GTCTC 2 cut(s) 667, 713
BstMBI GATC 1 cut(s) 1012
BstMWI GCNNNNNNNGC 5 cut(s) 332, 465, 687, 983, 1361
BstUI CGCG 1 cut(s) 326
BstV1I GCAGC 7 cut(s) 267, 315, 786, 1339, 1351, 1354, 1434
BstV2I GAAGAC 3 cut(s) 815, 849, 1281
BstXI CCANNNNNNTGG 1 cut(s) 886
Bsu15I ATCGAT 1 cut(s) 1293
BsuTUI ATCGAT 1 cut(s) 1293
BtsCI GGATG 3 cut(s) 100, 631, 801
BtsI GCAGTG 1 cut(s) 993
BtsIMutI CAGTG 1 cut(s) 993
Cac8I GCNNGC 2 cut(s) 159, 333
CfoI GCGC 2 cut(s) 328, 868
Cfr13I GGNCC 2 cut(s) 247, 784
ClaI ATCGAT 1 cut(s) 1293
CseI GACGC 2 cut(s) 310, 1163
CviAII CATG 4 cut(s) 943, 958, 980, 1007
DdeI CTNAG 6 cut(s) 68, 295, 612, 912, 936, 1186
DpnI GATC 1 cut(s) 1014
DpnII GATC 1 cut(s) 1012
Eam1104I CTCTTC 2 cut(s) 1295, 1428
EarI CTCTTC 2 cut(s) 1295, 1428
Eco47I GGWCC 2 cut(s) 247, 784
Eco47III AGCGCT 1 cut(s) 867
Eco57I CTGAAG 2 cut(s) 687, 861
Eco88I CYCGRG 2 cut(s) 162, 1169
EcoO109I RGGNCCY 1 cut(s) 784
FaeI CATG 4 cut(s) 946, 961, 983, 1010
FalI AAGNNNNNCTT 4 cut(s) 371, 403, 1015, 1047
FaqI GGGAC 2 cut(s) 398, 712
FatI CATG 4 cut(s) 942, 957, 979, 1006
FauI CCCGC 1 cut(s) 180
FbaI TGATCA 1 cut(s) 1012
FblI GTMKAC 2 cut(s) 168, 195
Fnu4HI GCNGC 9 cut(s) 258, 261, 281, 329, 800, 1353, 1365, 1368, 1423
FokI GGATG 3 cut(s) 107, 638, 808
Fsp4HI GCNGC 9 cut(s) 258, 261, 281, 329, 800, 1353, 1365, 1368, 1423
GlaI GCGC 2 cut(s) 327, 867
GluI GCNGC 9 cut(s) 258, 261, 281, 329, 800, 1353, 1365, 1368, 1423
GsaI CCCAGC 1 cut(s) 699
GsuI CTGGAG 2 cut(s) 663, 824
HaeII RGCGCY 1 cut(s) 869
HapII CCGG 2 cut(s) 220, 338
HgaI GACGC 2 cut(s) 310, 1163
HhaI GCGC 2 cut(s) 328, 868
Hin1I GRCGYC 1 cut(s) 360
Hin1II CATG 4 cut(s) 946, 961, 983, 1010
Hin6I GCGC 2 cut(s) 326, 866
HinP1I GCGC 2 cut(s) 326, 866
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HpaII CCGG 2 cut(s) 220, 338
HphI GGTGA 5 cut(s) 427, 607, 1022, 1128, 1208
Hpy166II GTNNAC 6 cut(s) 24, 169, 196, 772, 1055, 1445
Hpy188I TCNGA 7 cut(s) 52, 84, 216, 841, 1095, 1453, 1465
Hpy188III TCNNGA 7 cut(s) 25, 179, 482, 763, 911, 1207, 1223
Hpy8I GTNNAC 6 cut(s) 24, 169, 196, 772, 1055, 1445
Hpy99I CGWCG 4 cut(s) 326, 362, 365, 1179
HpyAV CCTTC 1 cut(s) 403
HpyCH4III ACNGT 2 cut(s) 88, 678
HpyCH4IV ACGT 2 cut(s) 360, 774
HpyCH4V TGCA 5 cut(s) 157, 656, 690, 1043, 1355
HpyF10VI GCNNNNNNNGC 5 cut(s) 332, 465, 687, 983, 1361
HpyF3I CTNAG 6 cut(s) 68, 295, 612, 912, 936, 1186
HpySE526I ACGT 2 cut(s) 360, 774
Hsp92I GRCGYC 1 cut(s) 360
Hsp92II CATG 4 cut(s) 946, 961, 983, 1010
HspAI GCGC 2 cut(s) 326, 866
Ksp22I TGATCA 1 cut(s) 1012
Kzo9I GATC 1 cut(s) 1012
LmnI GCTCC 4 cut(s) 216, 304, 340, 1003
Lsp1109I GCAGC 7 cut(s) 267, 315, 786, 1339, 1351, 1354, 1434
LweI GCATC 3 cut(s) 786, 865, 1035
MaeII ACGT 2 cut(s) 360, 774
MaeIII GTNAC 3 cut(s) 573, 632, 820
MalI GATC 1 cut(s) 1014
MboI GATC 1 cut(s) 1012
MboII GAAGA 8 cut(s) 409, 430, 820, 854, 975, 1286, 1312, 1445
MfeI CAATTG 1 cut(s) 1058
MhlI GDGCHC 1 cut(s) 942
MluCI AATT 8 cut(s) 60, 78, 140, 421, 568, 685, 921, 1058
MlyI GAGTC 2 cut(s) 1099, 1454
MmeI TCCRAC 2 cut(s) 525, 696
MseI TTAA 7 cut(s) 63, 378, 530, 906, 1077, 1164, 1335
MslI CAYNNNNRTG 2 cut(s) 947, 1320
MspA1I CMGCKG 2 cut(s) 280, 1388
MspI CCGG 2 cut(s) 220, 338
MunI CAATTG 1 cut(s) 1058
MvnI CGCG 1 cut(s) 326
MwoI GCNNNNNNNGC 5 cut(s) 332, 465, 687, 983, 1361
NdeII GATC 1 cut(s) 1012
NlaIII CATG 4 cut(s) 946, 961, 983, 1010
NlaIV GGNNCC 8 cut(s) 6, 218, 224, 310, 489, 748, 761, 1132
NspV TTCGAA 1 cut(s) 1247
PaeR7I CTCGAG 1 cut(s) 1169
PfeI GAWTC 8 cut(s) 133, 182, 252, 436, 473, 500, 970, 1096
PkrI GCNGC 9 cut(s) 259, 262, 282, 330, 801, 1354, 1366, 1369, 1424
PleI GAGTC 2 cut(s) 1098, 1454
PpsI GAGTC 2 cut(s) 1098, 1454
PpuMI RGGWCCY 1 cut(s) 784
PsiI TTATAA 2 cut(s) 449, 1151
Psp5II RGGWCCY 1 cut(s) 784
PspFI CCCAGC 1 cut(s) 695
PspN4I GGNNCC 8 cut(s) 6, 218, 224, 310, 489, 748, 761, 1132
PspPI GGNCC 2 cut(s) 247, 784
PspPPI RGGWCCY 1 cut(s) 784
PspXI VCTCGAGB 1 cut(s) 1169
PvuII CAGCTG 1 cut(s) 280
RseI CAYNNNNRTG 2 cut(s) 947, 1320
SalI GTCGAC 1 cut(s) 167
SaqAI TTAA 7 cut(s) 63, 378, 530, 906, 1077, 1164, 1335
SatI GCNGC 9 cut(s) 258, 261, 281, 329, 800, 1353, 1365, 1368, 1423
Sau3AI GATC 1 cut(s) 1012
Sau96I GGNCC 2 cut(s) 247, 784
SchI GAGTC 2 cut(s) 1099, 1454
SduI GDGCHC 1 cut(s) 942
SfaNI GCATC 3 cut(s) 786, 865, 1035
Sfr274I CTCGAG 1 cut(s) 1169
SfuI TTCGAA 1 cut(s) 1247
SinI GGWCC 2 cut(s) 247, 784
SlaI CTCGAG 1 cut(s) 1169
SmiMI CAYNNNNRTG 2 cut(s) 947, 1320
SmlI CTYRAG 1 cut(s) 1169
SmoI CTYRAG 1 cut(s) 1169
Sse9I AATT 8 cut(s) 60, 78, 140, 421, 568, 685, 921, 1058
SsiI CCGC 7 cut(s) 173, 201, 258, 261, 306, 346, 1388
SspI AATATT 1 cut(s) 896
TaaI ACNGT 2 cut(s) 88, 678
TaiI ACGT 2 cut(s) 363, 777
TaqII GACCGA 1 cut(s) 264
TasI AATT 8 cut(s) 60, 78, 140, 421, 568, 685, 921, 1058
TauI GCSGC 2 cut(s) 260, 263
TfiI GAWTC 8 cut(s) 133, 182, 252, 436, 473, 500, 970, 1096
Tru1I TTAA 7 cut(s) 63, 378, 530, 906, 1077, 1164, 1335
Tru9I TTAA 7 cut(s) 63, 378, 530, 906, 1077, 1164, 1335
TscAI CASTG 1 cut(s) 993
TseI GCWGC 7 cut(s) 280, 328, 799, 1352, 1364, 1367, 1422
TspDTI ATGAA 7 cut(s) 111, 422, 959, 996, 1278, 1287, 1353
TspGWI ACGGA 1 cut(s) 1423
TspRI CASTG 1 cut(s) 993
VpaK11BI GGWCC 2 cut(s) 247, 784
XapI RAATTY 2 cut(s) 421, 568
XhoI CTCGAG 1 cut(s) 1169
XmiI GTMKAC 2 cut(s) 168, 195
ZraI GACGTC 1 cut(s) 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.