Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002351

Physical Location & Seq

Genomic Coordinates Reverse (-)

24893668 .. 24895041

Gene Structure 1374 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008045

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGTTCCATCTCTAATCGAGTTCACGACTTCCTCAAATCCACCAAACTTTGAACCCAAAATTAAGCTAAGCCCATCAATTCAGACCGTTGTAGATGAAATCCACAAGGAAAACCCCAAACACTCGCCCTTGATTCAACAATTCTACCAACCAATGCAATCTCGGGTCGGCCCGCCTCTCGAATCCATCTGGGTCTACACCGCATTGACATTTCGGAGACGGAACCACCCAAAAGGCGACATCTTGGACAAACTTGCCGCTGCAAAAGACTTGTTTCAGCTGCTCTCCTCTTGCTCAGCTGCCTACGGTTCCTCAGAGCGTCGCGCCGCTCGCTCCGGTGGTGCGAGGGAGTTGGGGTTGAAGAAAGTGATGAAGGGGGTGAAGAATTTGGTGGGAGTGATTCTATGGTTTATAAATGTGTGCTATTCTAGCAAGGATTCCTGTCAGGAGGAACCTTTGATTGATTCGAGTTCAGGTTGGTCTTTTTTGGGTTTAAATTGTGTTTGTTTGAACAGAGATGAGAATGTTAGGAATTTGTTACCTTTAGTGAGTGAGGAGGTGATTGGTGGGCTTAGTGAGATAGATGGGGATGTGAGCTACTTGGCTGGAGTTGTTATTGCAGAGGTTTTTTTGTTGAGACTGTGCTTGAATTGCAAAGCTGGGACTTCAGGGGAGAGTTCTGAAGACGAGGGAGTCGCGGCGACCGGGGGAGGCGGGGGGAACGGGAGAGAAGAGAACGGGACTAGCGGCGTCGGAGGAGTGAAGTGGCAGGGGGATCATGACGGGAGAGAGAGAGTTGCCGGAGGGGGAAATATCGGAGACGGGAGGGGAGGAGTCGATGGGCTCCGAGGCGGCGAAGAACCCGACTTGGCGGACCTTCGGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

296

Amino Acids

31.53

Weight (kDa)

5.22

Isoelectric Point (pI)

53.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11780
fragaria_vesca	FvH4_1g07060
malus_domestica	MD02G1074500.v1.1
prunus_persica	Prupe.7G213400_v2.0.a1
pyrus_communis	pycom02g05890 pycom15g18070
rosa_chinensis	RchiOBHm_Chr2g0092961 RchiOBHm_Chr4g0406051 RchiOBHm_Chr4g0425381
rosa_laevigata	RLG00000008045 RLG00000016353 RLG00000020789 RLG00000033390
rosa_multiflora	Rmu_co8270331.1_g000001 Rmu_sc0000596.1_g000010 Rmu_sc0000965.1_g000017 Rmu_sc0002862.1_g000003 Rmu_sc0002882.1_g000032 Rmu_sc0003902.1_g000018 Rmu_sc0006662.1_g000006 Rmu_sc0010963.1_g000006 Rmu_sc0012535.1_g000006
rosa_roxburghii	Rroxscaffold_2G00148670
rosa_rugosa	Rorug02G0030700
rosa_samantha	Rh1DG034900 Rh2AG076700 Rh2BG078000 Rh2CG080200 Rh2DG075300 Rh2DG566700 Rh3BG038800 Rh3CG266800 Rh3DG038000 Rh3DG262900 Rh6AG284700 Rh6BG048400 Rh6BG286100 Rh6CG287100 Rh7AG478700
rosa_wichuraiana	Rw2G006950 Rw3G003880 Rw3G021260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	413
AasI	GACNNNNNNGTC	1 cut(s)	692
AccBSI	CCGCTC	1 cut(s)	329
AccI	GTMKAC	1 cut(s)	195
AccII	CGCG	2 cut(s)	324, 698
AciI	CCGC	9 cut(s)	173, 201, 258, 327, 698, 714, 747, 852, 872
AclWI	GGATC	1 cut(s)	783
AcsI	RAATTY	2 cut(s)	385, 532
AcuI	CTGAAG	2 cut(s)	651, 702
AcyI	GRCGYC	1 cut(s)	750
AgsI	TTSAA	5 cut(s)	53, 137, 361, 511, 649
AluBI	AGCT	5 cut(s)	67, 280, 299, 597, 659
AluI	AGCT	5 cut(s)	67, 280, 299, 597, 659
Alw26I	GTCTC	3 cut(s)	211, 631, 813
AlwI	GGATC	1 cut(s)	783
Ama87I	CYCGRG	1 cut(s)	162
AoxI	GGCC	1 cut(s)	169
ApeKI	GCWGC	3 cut(s)	260, 280, 299
ApoI	RAATTY	2 cut(s)	385, 532
AspLEI	GCGC	1 cut(s)	326
AspS9I	GGNCC	2 cut(s)	170, 874
AsuC2I	CCSGG	1 cut(s)	706
AsuHPI	GGTGA	2 cut(s)	391, 571
AvaI	CYCGRG	1 cut(s)	162
AvaII	GGWCC	1 cut(s)	874
BanII	GRGCYC	1 cut(s)	846
BbsI	GAAGAC	1 cut(s)	690
BbvI	GCAGC	3 cut(s)	247, 267, 286
BccI	CCATC	5 cut(s)	16, 82, 194, 578, 833
BcnI	CCSGG	1 cut(s)	706
BcoDI	GTCTC	3 cut(s)	211, 631, 813
BfaI	CTAG	2 cut(s)	429, 744
BisI	GCNGC	8 cut(s)	258, 261, 281, 300, 327, 699, 748, 853
BlpI	GCTNAGC	2 cut(s)	68, 295
BlsI	GCNGC	8 cut(s)	259, 262, 282, 301, 328, 700, 749, 854
Bme1390I	CCNGG	1 cut(s)	706
Bme18I	GGWCC	1 cut(s)	874
BmeT110I	CYCGRG	1 cut(s)	162
BmgT120I	GGNCC	2 cut(s)	170, 874
BmiI	GGNNCC	5 cut(s)	6, 224, 310, 453, 845
BmrFI	CCNGG	1 cut(s)	706
BpiI	GAAGAC	1 cut(s)	690
BpmI	CTGGAG	1 cut(s)	627
Bpu1102I	GCTNAGC	2 cut(s)	68, 295
BpuMI	CCSGG	1 cut(s)	706
BsaHI	GRCGYC	1 cut(s)	750
BsaJI	CCNNGG	2 cut(s)	705, 847
BsaWI	WCCGGW	1 cut(s)	335
BsaXI	ACNNNNNCTCC	2 cut(s)	341, 371
BseDI	CCNNGG	2 cut(s)	705, 847
BseGI	GGATG	1 cut(s)	595
BseMII	CTCAG	2 cut(s)	309, 327
BseRI	GAGGAG	4 cut(s)	277, 569, 771, 846
BseXI	GCAGC	3 cut(s)	247, 267, 286
BseYI	CCCAGC	1 cut(s)	659
Bsh1236I	CGCG	2 cut(s)	324, 698
Bsh1285I	CGRYCG	1 cut(s)	705
BshFI	GGCC	1 cut(s)	171
BsiEI	CGRYCG	1 cut(s)	705
BsiHKCI	CYCGRG	1 cut(s)	162
BsiSI	CCGG	3 cut(s)	336, 705, 801
BslFI	GGGAC	2 cut(s)	676, 754
BsmAI	GTCTC	3 cut(s)	211, 631, 813
BsmBI	CGTCTC	2 cut(s)	211, 813
BsmFI	GGGAC	2 cut(s)	676, 754
BsnI	GGCC	1 cut(s)	171
BsoBI	CYCGRG	1 cut(s)	162
Bsp1286I	GDGCHC	1 cut(s)	846
Bsp143I	GATC	1 cut(s)	775
Bsp1720I	GCTNAGC	2 cut(s)	68, 295
BspACI	CCGC	9 cut(s)	173, 201, 258, 327, 698, 714, 747, 852, 872
BspANI	GGCC	1 cut(s)	171
BspCNI	CTCAG	2 cut(s)	308, 326
BspFNI	CGCG	2 cut(s)	324, 698
BspHI	TCATGA	1 cut(s)	778
BspLI	GGNNCC	5 cut(s)	6, 224, 310, 453, 845
BspPI	GGATC	1 cut(s)	783
BsrBI	CCGCTC	1 cut(s)	329
BssECI	CCNNGG	2 cut(s)	705, 847
BssMI	GATC	1 cut(s)	775
BssNI	GRCGYC	1 cut(s)	750
Bst4CI	ACNGT	3 cut(s)	88, 308, 642
Bst6I	CTCTTC	1 cut(s)	726
BstACI	GRCGYC	1 cut(s)	750
BstC8I	GCNNGC	2 cut(s)	173, 331
BstDEI	CTNAG	4 cut(s)	68, 295, 313, 572
BstF5I	GGATG	1 cut(s)	595
BstFNI	CGCG	2 cut(s)	324, 698
BstHHI	GCGC	1 cut(s)	326
BstKTI	GATC	1 cut(s)	778
BstMAI	GTCTC	3 cut(s)	211, 631, 813
BstMBI	GATC	1 cut(s)	775
BstMCI	CGRYCG	1 cut(s)	705
BstMWI	GCNNNNNNNGC	3 cut(s)	330, 429, 651
BstSCI	CCNGG	1 cut(s)	704
BstUI	CGCG	2 cut(s)	324, 698
BstV1I	GCAGC	3 cut(s)	247, 267, 286
BstV2I	GAAGAC	1 cut(s)	690
BsuRI	GGCC	1 cut(s)	171
BtsCI	GGATG	1 cut(s)	595
Cac8I	GCNNGC	2 cut(s)	173, 331
CciI	TCATGA	1 cut(s)	778
CfoI	GCGC	1 cut(s)	326
Cfr13I	GGNCC	2 cut(s)	170, 874
CseI	GACGC	2 cut(s)	308, 739
CviAII	CATG	1 cut(s)	779
DdeI	CTNAG	4 cut(s)	68, 295, 313, 572
DpnI	GATC	1 cut(s)	777
DpnII	GATC	1 cut(s)	775
DraI	TTTAAA	1 cut(s)	495
DrdI	GACNNNNNNGTC	1 cut(s)	692
DseDI	GACNNNNNNGTC	1 cut(s)	692
Eam1104I	CTCTTC	1 cut(s)	726
EarI	CTCTTC	1 cut(s)	726
EciI	GGCGGA	1 cut(s)	887
Eco24I	GRGCYC	1 cut(s)	846
Eco47I	GGWCC	1 cut(s)	874
Eco57I	CTGAAG	2 cut(s)	651, 702
Eco88I	CYCGRG	1 cut(s)	162
EcoT38I	GRGCYC	1 cut(s)	846
Esp3I	CGTCTC	2 cut(s)	211, 813
FaeI	CATG	1 cut(s)	782
FaiI	YATR	3 cut(s)	406, 413, 780
FaqI	GGGAC	2 cut(s)	676, 754
FatI	CATG	1 cut(s)	778
FauI	CCCGC	2 cut(s)	180, 707
FblI	GTMKAC	1 cut(s)	195
Fnu4HI	GCNGC	8 cut(s)	258, 261, 281, 300, 327, 699, 748, 853
FokI	GGATG	1 cut(s)	602
FriOI	GRGCYC	1 cut(s)	846
Fsp4HI	GCNGC	8 cut(s)	258, 261, 281, 300, 327, 699, 748, 853
FspBI	CTAG	2 cut(s)	429, 744
GlaI	GCGC	1 cut(s)	325
GluI	GCNGC	8 cut(s)	258, 261, 281, 300, 327, 699, 748, 853
GsaI	CCCAGC	1 cut(s)	663
GsuI	CTGGAG	1 cut(s)	627
HaeIII	GGCC	1 cut(s)	171
HapII	CCGG	3 cut(s)	336, 705, 801
HgaI	GACGC	2 cut(s)	308, 739
HhaI	GCGC	1 cut(s)	326
Hin1I	GRCGYC	1 cut(s)	750
Hin1II	CATG	1 cut(s)	782
Hin6I	GCGC	1 cut(s)	324
HinP1I	GCGC	1 cut(s)	324
HinfI	GANTC	7 cut(s)	133, 182, 400, 437, 464, 693, 834
HpaII	CCGG	3 cut(s)	336, 705, 801
HphI	GGTGA	2 cut(s)	391, 571
Hpy166II	GTNNAC	2 cut(s)	24, 196
Hpy188I	TCNGA	7 cut(s)	84, 216, 316, 682, 755, 818, 848
Hpy188III	TCNNGA	5 cut(s)	25, 179, 446, 779, 881
Hpy8I	GTNNAC	2 cut(s)	24, 196
Hpy99I	CGWCG	2 cut(s)	324, 755
HpyAV	CCTTC	2 cut(s)	367, 887
HpyCH4III	ACNGT	3 cut(s)	88, 308, 642
HpyCH4V	TGCA	4 cut(s)	157, 263, 620, 654
HpyF10VI	GCNNNNNNNGC	3 cut(s)	330, 429, 651
HpyF3I	CTNAG	4 cut(s)	68, 295, 313, 572
Hsp92I	GRCGYC	1 cut(s)	750
Hsp92II	CATG	1 cut(s)	782
HspAI	GCGC	1 cut(s)	324
Kzo9I	GATC	1 cut(s)	775
LmnI	GCTCC	2 cut(s)	338, 849
Lsp1109I	GCAGC	3 cut(s)	247, 267, 286
MaeI	CTAG	2 cut(s)	429, 744
MaeIII	GTNAC	1 cut(s)	537
MalI	GATC	1 cut(s)	777
MbiI	CCGCTC	1 cut(s)	329
MboI	GATC	1 cut(s)	775
MboII	GAAGA	5 cut(s)	373, 394, 695, 743, 869
MhlI	GDGCHC	1 cut(s)	846
MluCI	AATT	7 cut(s)	60, 78, 140, 385, 496, 532, 649
MlyI	GAGTC	2 cut(s)	702, 843
MmeI	TCCRAC	1 cut(s)	733
MseI	TTAA	2 cut(s)	63, 494
MspA1I	CMGCKG	3 cut(s)	260, 280, 299
MspI	CCGG	3 cut(s)	336, 705, 801
MspR9I	CCNGG	1 cut(s)	706
MvnI	CGCG	2 cut(s)	324, 698
MwoI	GCNNNNNNNGC	3 cut(s)	330, 429, 651
NciI	CCSGG	1 cut(s)	706
NdeII	GATC	1 cut(s)	775
NlaIII	CATG	1 cut(s)	782
NlaIV	GGNNCC	5 cut(s)	6, 224, 310, 453, 845
PagI	TCATGA	1 cut(s)	778
PfeI	GAWTC	5 cut(s)	133, 182, 400, 437, 464
PkrI	GCNGC	8 cut(s)	259, 262, 282, 301, 328, 700, 749, 854
PleI	GAGTC	2 cut(s)	701, 842
PpsI	GAGTC	2 cut(s)	701, 842
PsiI	TTATAA	1 cut(s)	413
PspFI	CCCAGC	1 cut(s)	659
PspN4I	GGNNCC	5 cut(s)	6, 224, 310, 453, 845
PspPI	GGNCC	2 cut(s)	170, 874
PvuII	CAGCTG	2 cut(s)	280, 299
SaqAI	TTAA	2 cut(s)	63, 494
SatI	GCNGC	8 cut(s)	258, 261, 281, 300, 327, 699, 748, 853
Sau3AI	GATC	1 cut(s)	775
Sau96I	GGNCC	2 cut(s)	170, 874
SchI	GAGTC	2 cut(s)	702, 843
ScrFI	CCNGG	1 cut(s)	706
SduI	GDGCHC	1 cut(s)	846
SinI	GGWCC	1 cut(s)	874
Sse9I	AATT	7 cut(s)	60, 78, 140, 385, 496, 532, 649
SsiI	CCGC	9 cut(s)	173, 201, 258, 327, 698, 714, 747, 852, 872
SspMI	CTAG	2 cut(s)	429, 744
StyD4I	CCNGG	1 cut(s)	704
TaaI	ACNGT	3 cut(s)	88, 308, 642
TaqI	TCGA	4 cut(s)	18, 180, 467, 837
TasI	AATT	7 cut(s)	60, 78, 140, 385, 496, 532, 649
TauI	GCSGC	5 cut(s)	260, 329, 701, 750, 855
TfiI	GAWTC	5 cut(s)	133, 182, 400, 437, 464
Tru1I	TTAA	2 cut(s)	63, 494
Tru9I	TTAA	2 cut(s)	63, 494
TseI	GCWGC	3 cut(s)	260, 280, 299
TspDTI	ATGAA	2 cut(s)	111, 386
TspGWI	ACGGA	1 cut(s)	235
VpaK11BI	GGWCC	1 cut(s)	874
XapI	RAATTY	2 cut(s)	385, 532
XmiI	GTMKAC	1 cut(s)	195
XspI	CTAG	2 cut(s)	429, 744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.