Rh6CG287100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0002351
Physical Location & Seq
Forward (+)
46518272 .. 46518763
492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG287100.1

Sequence Viewer

Length: 492 bp
ATGGTTCCAACTCTAATCGAGTCCACGACTTCCTTAAATCTGCCAAACTCCGAACCCCAAATTAAGCTAAGCCCATCAATTCAAACCGTTGTAGTTGAAATCCACAAGGAAAACCCCAAATTGTCTCCCTTGATTCAACAATTCTACCAACCAATGCAATCTCGGGTCGACTCGCCTCTCGAATCCATATGGGTCTACACCACATTGACATTTCGGAGCTGGAACCACCCAAAAGGCGACATCTTGGACCGAATCGCCGCCGCAAAGGACTTGTTTCAGCTGCTCTCCTCTTGCTCAGCTCTCTGCGGTTCCTCAAAGAGCTTCGCGCTACTCACTTCGGTTGTGCGGTTGGCACACGATGTTGTTTTGGATTTGTTTAAGAGGGAGTTGGGGTTGAAGAAAGAGAAGAAAGTGATGAAGGAGGTGAAGAATTTGGTGGGAGTGATTCTGGGGTTTATAAATGTGTGCTGTTCTAGCAGGGATTCGGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

163

Amino Acids

18.14

Weight (kDa)

8.93

Isoelectric Point (pI)

49.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 458
AccI GTMKAC 2 cut(s) 168, 195
AccII CGCG 1 cut(s) 326
AciI CCGC 4 cut(s) 258, 261, 306, 346
AcsI RAATTY 1 cut(s) 430
AgsI TTSAA 4 cut(s) 83, 98, 137, 397
AluBI AGCT 5 cut(s) 67, 219, 280, 299, 321
AluI AGCT 5 cut(s) 67, 219, 280, 299, 321
Alw26I GTCTC 1 cut(s) 129
Ama87I CYCGRG 1 cut(s) 162
ApeKI GCWGC 1 cut(s) 280
ApoI RAATTY 1 cut(s) 430
AspLEI GCGC 1 cut(s) 328
AspS9I GGNCC 1 cut(s) 247
AsuHPI GGTGA 1 cut(s) 436
AvaI CYCGRG 1 cut(s) 162
AvaII GGWCC 1 cut(s) 247
BbvI GCAGC 1 cut(s) 267
BccI CCATC 1 cut(s) 82
BcoDI GTCTC 1 cut(s) 129
BfaI CTAG 1 cut(s) 474
BisI GCNGC 3 cut(s) 258, 261, 281
BlpI GCTNAGC 2 cut(s) 68, 295
BlsI GCNGC 3 cut(s) 259, 262, 282
Bme18I GGWCC 1 cut(s) 247
BmeT110I CYCGRG 1 cut(s) 162
BmgT120I GGNCC 1 cut(s) 247
BmiI GGNNCC 3 cut(s) 6, 224, 310
Bpu1102I GCTNAGC 2 cut(s) 68, 295
BsaXI ACNNNNNCTCC 2 cut(s) 377, 407
BseMII CTCAG 1 cut(s) 309
BseRI GAGGAG 1 cut(s) 277
BseXI GCAGC 1 cut(s) 267
Bsh1236I CGCG 1 cut(s) 326
BsiHKCI CYCGRG 1 cut(s) 162
BsmAI GTCTC 1 cut(s) 129
BsoBI CYCGRG 1 cut(s) 162
Bsp1720I GCTNAGC 2 cut(s) 68, 295
BspACI CCGC 4 cut(s) 258, 261, 306, 346
BspCNI CTCAG 1 cut(s) 308
BspFNI CGCG 1 cut(s) 326
BspLI GGNNCC 3 cut(s) 6, 224, 310
Bst4CI ACNGT 1 cut(s) 88
BstDEI CTNAG 2 cut(s) 68, 295
BstFNI CGCG 1 cut(s) 326
BstHHI GCGC 1 cut(s) 328
BstMAI GTCTC 1 cut(s) 129
BstMWI GCNNNNNNNGC 1 cut(s) 474
BstUI CGCG 1 cut(s) 326
BstV1I GCAGC 1 cut(s) 267
CfoI GCGC 1 cut(s) 328
Cfr13I GGNCC 1 cut(s) 247
CviJI RGCY 6 cut(s) 67, 72, 219, 280, 299, 321
CviKI_1 RGCY 6 cut(s) 67, 72, 219, 280, 299, 321
DdeI CTNAG 2 cut(s) 68, 295
Eco47I GGWCC 1 cut(s) 247
Eco88I CYCGRG 1 cut(s) 162
FaiI YATR 3 cut(s) 188, 190, 458
FauNDI CATATG 1 cut(s) 188
FblI GTMKAC 2 cut(s) 168, 195
Fnu4HI GCNGC 3 cut(s) 258, 261, 281
Fsp4HI GCNGC 3 cut(s) 258, 261, 281
FspBI CTAG 1 cut(s) 474
GlaI GCGC 1 cut(s) 327
GluI GCNGC 3 cut(s) 258, 261, 281
HhaI GCGC 1 cut(s) 328
Hin6I GCGC 1 cut(s) 326
HinP1I GCGC 1 cut(s) 326
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HinfI GANTC 7 cut(s) 20, 133, 170, 182, 252, 445, 482
HphI GGTGA 1 cut(s) 436
Hpy166II GTNNAC 3 cut(s) 24, 169, 196
Hpy188I TCNGA 2 cut(s) 52, 216
Hpy188III TCNNGA 1 cut(s) 179
Hpy8I GTNNAC 3 cut(s) 24, 169, 196
HpyAV CCTTC 1 cut(s) 412
HpyCH4III ACNGT 1 cut(s) 88
HpyCH4V TGCA 1 cut(s) 157
HpyF10VI GCNNNNNNNGC 1 cut(s) 474
HpyF3I CTNAG 2 cut(s) 68, 295
HspAI GCGC 1 cut(s) 326
LmnI GCTCC 1 cut(s) 216
LpnPI CCDG 3 cut(s) 205, 434, 463
Lsp1109I GCAGC 1 cut(s) 267
MaeI CTAG 1 cut(s) 474
MboII GAAGA 3 cut(s) 409, 418, 439
MluCI AATT 5 cut(s) 60, 78, 119, 140, 430
MlyI GAGTC 2 cut(s) 29, 164
MmeI TCCRAC 1 cut(s) 32
MnlI CCTC 5 cut(s) 186, 298, 322, 375, 415
MseI TTAA 3 cut(s) 35, 63, 378
MspA1I CMGCKG 1 cut(s) 280
MvnI CGCG 1 cut(s) 326
MwoI GCNNNNNNNGC 1 cut(s) 474
NdeI CATATG 1 cut(s) 188
NlaIV GGNNCC 3 cut(s) 6, 224, 310
PfeI GAWTC 5 cut(s) 133, 182, 252, 445, 482
PkrI GCNGC 3 cut(s) 259, 262, 282
PleI GAGTC 2 cut(s) 28, 164
PpsI GAGTC 2 cut(s) 28, 164
PsiI TTATAA 1 cut(s) 458
PspN4I GGNNCC 3 cut(s) 6, 224, 310
PspPI GGNCC 1 cut(s) 247
PvuII CAGCTG 1 cut(s) 280
SalI GTCGAC 1 cut(s) 167
SaqAI TTAA 3 cut(s) 35, 63, 378
SatI GCNGC 3 cut(s) 258, 261, 281
Sau96I GGNCC 1 cut(s) 247
SchI GAGTC 2 cut(s) 29, 164
SetI ASST 6 cut(s) 69, 221, 282, 301, 323, 426
SinI GGWCC 1 cut(s) 247
Sse9I AATT 5 cut(s) 60, 78, 119, 140, 430
SsiI CCGC 4 cut(s) 258, 261, 306, 346
SspMI CTAG 1 cut(s) 474
TaaI ACNGT 1 cut(s) 88
TaqI TCGA 3 cut(s) 18, 168, 180
TaqII GACCGA 1 cut(s) 264
TasI AATT 5 cut(s) 60, 78, 119, 140, 430
TauI GCSGC 2 cut(s) 260, 263
TfiI GAWTC 5 cut(s) 133, 182, 252, 445, 482
Tru1I TTAA 3 cut(s) 35, 63, 378
Tru9I TTAA 3 cut(s) 35, 63, 378
TseI GCWGC 1 cut(s) 280
TspDTI ATGAA 1 cut(s) 431
VpaK11BI GGWCC 1 cut(s) 247
XapI RAATTY 1 cut(s) 430
XmiI GTMKAC 2 cut(s) 168, 195
XspI CTAG 1 cut(s) 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.