Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000965.1

Orthogroup ID

OG0002351

Physical Location & Seq

Genomic Coordinates Forward (+)

78780 .. 81219

Gene Structure 2440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000965.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1623 bp

atggttccatctctaatcgagttcacgacttcctcaaatccaccaaactccgaactccaaattaagctaagcccatcaattcagaccgttgtggatgaaatccacaaggaaaaccccaaactctctcccttgattcaacaattctaccaaccaatgcaagctcgggtcgacccgcctctcgaatccatctgggtctacaccgcattgacatttcggagccggaaccacccaaaaggcgacatcttggaccgaatcgccgccgcaaaggacttgtttcagctgctctcctcttgctcagctccctgcggttcctcaaagagcgtcgcgctgctcgctccggtggtgcggttggcacacgacgtcgttttggatttgtttaagagggacttggggttgaagaaacagaagaaagtgatgaaggcgggattccggtcaggaggaacctttggcggttcctcaaagagcgtcgcgctgctcgctccggtggtgcggttggcacacgacgtcgttttggatttgtttaagagggacttggggttgaagaaagagaagaaagtgatgaaggaggtgaagaatttggtgggagtgattctggggtttataaatgtgtgctgttctagcagggattccggtcaggaggaacctttgattgattcgagttcgggttggtctttttcgggtttaagttgtgtttggttggacagagatgagaatgttaggaatttgttacctttagcgagtgaggaggtgattggtgggcttagtgagagagatggggatgtgagttacttggctggagttgttattgcagaggtttttttgttgagactgtgcttgaattgcaaagctgggacttccggggaggtgttggagacagagttgaggacttgggctgttggttccattactgggttccagaatgtttacgttttcgacgtccttttgaggatgctgctggagaagactttgcctgttacctcccttttgagttctgaagacgaagttttgttgaggaaagcgctgtatgatgccatcatattggtcgaatattctttccttaatcctgagaaagcaattcacatatctgctgagcacatgaaaatgattgccatgagaagattgattcttgcccatgaagcagtggagtattttagggagcatggtgatcaaaggagaagcatctcttttactactgcattttccagttcacaattgtattcccaagtggttaaatgggtaaagagtcagattcctgtggaggatagctcggtcaaatcaaagggaacctcacccaaagctcttataaaatggcttcttaacctcgagcgtcgaggcttcttagtgtttggtgatagtatcttgaagtatcatagtcttgatatgtctaaaccaccagcttcgaagttagacagcaatgaagttgatgaagaccctatcttttacatcgataacaagaggcgaggagaacatacagatgatggagaagttaatgaatacatcagtgctgcatttttagctgctgccaatacaatgacatcagcggagaaaagagggaaaaaacggaaaggggaaagcagcgagagtgaagaggagagttcactctctgatgaggactcggaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

540

Amino Acids

59.95

Weight (kDa)

6.03

Isoelectric Point (pI)

50.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11780
fragaria_vesca	FvH4_1g07060
malus_domestica	MD02G1074500.v1.1
prunus_persica	Prupe.7G213400_v2.0.a1
pyrus_communis	pycom02g05890 pycom15g18070
rosa_chinensis	RchiOBHm_Chr2g0092961 RchiOBHm_Chr4g0406051 RchiOBHm_Chr4g0425381
rosa_laevigata	RLG00000008045 RLG00000016353 RLG00000020789 RLG00000033390
rosa_multiflora	Rmu_co8270331.1_g000001 Rmu_sc0000596.1_g000010 Rmu_sc0000965.1_g000017 Rmu_sc0002862.1_g000003 Rmu_sc0002882.1_g000032 Rmu_sc0003902.1_g000018 Rmu_sc0006662.1_g000006 Rmu_sc0010963.1_g000006 Rmu_sc0012535.1_g000006
rosa_roxburghii	Rroxscaffold_2G00148670
rosa_rugosa	Rorug02G0030700
rosa_samantha	Rh1DG034900 Rh2AG076700 Rh2BG078000 Rh2CG080200 Rh2DG075300 Rh2DG566700 Rh3BG038800 Rh3CG266800 Rh3DG038000 Rh3DG262900 Rh6AG284700 Rh6BG048400 Rh6BG286100 Rh6CG287100 Rh7AG478700
rosa_wichuraiana	Rw2G006950 Rw3G003880 Rw3G021260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	602, 1304
AatII	GACGTC	3 cut(s)	363, 507, 939
AccI	GTMKAC	2 cut(s)	168, 195
AccII	CGCG	2 cut(s)	326, 470
AcsI	RAATTY	2 cut(s)	574, 721
AcuI	CTGAAG	1 cut(s)	1014
AcyI	GRCGYC	3 cut(s)	360, 504, 936
AfeI	AGCGCT	1 cut(s)	1020
AfiI	CCNNNNNNNGG	1 cut(s)	909
AgsI	TTSAA	5 cut(s)	137, 397, 541, 838, 1363
AluBI	AGCT	9 cut(s)	67, 161, 280, 299, 848, 1266, 1298, 1397, 1517
AluI	AGCT	9 cut(s)	67, 161, 280, 299, 848, 1266, 1298, 1397, 1517
Alw21I	GWGCWC	1 cut(s)	1095
Alw26I	GTCTC	2 cut(s)	820, 866
Ama87I	CYCGRG	2 cut(s)	162, 1322
Aor51HI	AGCGCT	1 cut(s)	1020
ApeKI	GCWGC	8 cut(s)	280, 328, 472, 952, 1505, 1517, 1520, 1575
ApoI	RAATTY	2 cut(s)	574, 721
AspLEI	GCGC	3 cut(s)	328, 472, 1021
AspS9I	GGNCC	1 cut(s)	247
AsuC2I	CCSGG	1 cut(s)	859
AsuHPI	GGTGA	5 cut(s)	580, 760, 1175, 1281, 1361
AsuII	TTCGAA	1 cut(s)	1400
AvaI	CYCGRG	2 cut(s)	162, 1322
AvaII	GGWCC	1 cut(s)	247
BbsI	GAAGAC	3 cut(s)	968, 1002, 1434
Bbv12I	GWGCWC	1 cut(s)	1095
BbvI	GCAGC	8 cut(s)	267, 315, 459, 939, 1492, 1504, 1507, 1587
BccI	CCATC	6 cut(s)	16, 82, 194, 767, 1040, 1472
BclI	TGATCA	1 cut(s)	1165
BcnI	CCSGG	1 cut(s)	859
BcoDI	GTCTC	2 cut(s)	820, 866
BfaI	CTAG	1 cut(s)	618
BfoI	RGCGCY	1 cut(s)	1022
BlpI	GCTNAGC	3 cut(s)	68, 295, 1089
Bme1390I	CCNGG	1 cut(s)	859
Bme18I	GGWCC	1 cut(s)	247
BmeT110I	CYCGRG	2 cut(s)	162, 1322
BmgT120I	GGNCC	1 cut(s)	247
BmrFI	CCNGG	1 cut(s)	859
BmrI	ACTGGG	1 cut(s)	918
BmsI	GCATC	3 cut(s)	939, 1018, 1188
BmuI	ACTGGG	1 cut(s)	918
BpiI	GAAGAC	3 cut(s)	968, 1002, 1434
BplI	GAGNNNNNCTC	2 cut(s)	1250, 1282
BpmI	CTGGAG	2 cut(s)	816, 977
Bpu1102I	GCTNAGC	3 cut(s)	68, 295, 1089
Bpu14I	TTCGAA	1 cut(s)	1400
BpuMI	CCSGG	1 cut(s)	859
Bsa29I	ATCGAT	1 cut(s)	1446
BsaHI	GRCGYC	3 cut(s)	360, 504, 936
BsaJI	CCNNGG	1 cut(s)	858
BsaWI	WCCGGW	4 cut(s)	337, 429, 481, 629
BsaXI	ACNNNNNCTCC	2 cut(s)	863, 893
Bsc4I	CCNNNNNNNGG	1 cut(s)	909
Bse1I	ACTGG	2 cut(s)	913, 1203
Bse3DI	GCAATG	1 cut(s)	1420
BseCI	ATCGAT	1 cut(s)	1446
BseDI	CCNNGG	1 cut(s)	858
BseGI	GGATG	3 cut(s)	100, 784, 954
BseLI	CCNNNNNNNGG	1 cut(s)	909
BseMI	GCAATG	1 cut(s)	1420
BseMII	CTCAG	3 cut(s)	309, 1056, 1080
BseNI	ACTGG	2 cut(s)	913, 1203
BseRI	GAGGAG	4 cut(s)	277, 758, 1476, 1604
BseXI	GCAGC	8 cut(s)	267, 315, 459, 939, 1492, 1504, 1507, 1587
BseYI	CCCAGC	1 cut(s)	848
Bsh1236I	CGCG	2 cut(s)	326, 470
BshVI	ATCGAT	1 cut(s)	1446
BsiHKAI	GWGCWC	1 cut(s)	1095
BsiHKCI	CYCGRG	2 cut(s)	162, 1322
BsiSI	CCGG	6 cut(s)	220, 338, 430, 482, 630, 858
BslFI	GGGAC	3 cut(s)	398, 542, 865
BslI	CCNNNNNNNGG	1 cut(s)	909
BsmAI	GTCTC	2 cut(s)	820, 866
BsmFI	GGGAC	3 cut(s)	398, 542, 865
BsoBI	CYCGRG	2 cut(s)	162, 1322
Bsp119I	TTCGAA	1 cut(s)	1400
Bsp1286I	GDGCHC	1 cut(s)	1095
Bsp143I	GATC	1 cut(s)	1165
Bsp1720I	GCTNAGC	3 cut(s)	68, 295, 1089
BspCNI	CTCAG	3 cut(s)	308, 1057, 1081
BspDI	ATCGAT	1 cut(s)	1446
BspFNI	CGCG	2 cut(s)	326, 470
BspT104I	TTCGAA	1 cut(s)	1400
BsrDI	GCAATG	1 cut(s)	1420
BsrI	ACTGG	2 cut(s)	913, 1203
BssECI	CCNNGG	1 cut(s)	858
BssMI	GATC	1 cut(s)	1165
BssNI	GRCGYC	3 cut(s)	360, 504, 936
Bst4CI	ACNGT	2 cut(s)	88, 831
Bst6I	CTCTTC	1 cut(s)	1581
BstACI	GRCGYC	3 cut(s)	360, 504, 936
BstBI	TTCGAA	1 cut(s)	1400
BstC8I	GCNNGC	3 cut(s)	159, 333, 477
BstDEI	CTNAG	6 cut(s)	68, 295, 761, 1065, 1089, 1339
BstF5I	GGATG	3 cut(s)	100, 784, 954
BstFNI	CGCG	2 cut(s)	326, 470
BstH2I	RGCGCY	1 cut(s)	1022
BstHHI	GCGC	3 cut(s)	328, 472, 1021
BstKTI	GATC	1 cut(s)	1168
BstMAI	GTCTC	2 cut(s)	820, 866
BstMBI	GATC	1 cut(s)	1165
BstMWI	GCNNNNNNNGC	6 cut(s)	332, 476, 618, 840, 1136, 1514
BstSCI	CCNGG	1 cut(s)	857
BstUI	CGCG	2 cut(s)	326, 470
BstV1I	GCAGC	8 cut(s)	267, 315, 459, 939, 1492, 1504, 1507, 1587
BstV2I	GAAGAC	3 cut(s)	968, 1002, 1434
BstXI	CCANNNNNNTGG	1 cut(s)	1039
Bsu15I	ATCGAT	1 cut(s)	1446
BsuTUI	ATCGAT	1 cut(s)	1446
BtsCI	GGATG	3 cut(s)	100, 784, 954
BtsI	GCAGTG	1 cut(s)	1146
BtsIMutI	CAGTG	2 cut(s)	1146, 1507
Cac8I	GCNNGC	3 cut(s)	159, 333, 477
CfoI	GCGC	3 cut(s)	328, 472, 1021
Cfr13I	GGNCC	1 cut(s)	247
ClaI	ATCGAT	1 cut(s)	1446
CseI	GACGC	3 cut(s)	310, 454, 1316
CviAII	CATG	4 cut(s)	1096, 1111, 1133, 1160
DdeI	CTNAG	6 cut(s)	68, 295, 761, 1065, 1089, 1339
DpnI	GATC	1 cut(s)	1167
DpnII	GATC	1 cut(s)	1165
Eam1104I	CTCTTC	1 cut(s)	1581
EarI	CTCTTC	1 cut(s)	1581
Eco47I	GGWCC	1 cut(s)	247
Eco47III	AGCGCT	1 cut(s)	1020
Eco57I	CTGAAG	1 cut(s)	1014
Eco88I	CYCGRG	2 cut(s)	162, 1322
FaeI	CATG	4 cut(s)	1099, 1114, 1136, 1163
FalI	AAGNNNNNCTT	6 cut(s)	371, 403, 515, 547, 1168, 1200
FaqI	GGGAC	3 cut(s)	398, 542, 865
FatI	CATG	4 cut(s)	1095, 1110, 1132, 1159
FauI	CCCGC	2 cut(s)	180, 415
FbaI	TGATCA	1 cut(s)	1165
FblI	GTMKAC	2 cut(s)	168, 195
FokI	GGATG	3 cut(s)	107, 791, 961
FspBI	CTAG	1 cut(s)	618
GlaI	GCGC	3 cut(s)	327, 471, 1020
GsaI	CCCAGC	1 cut(s)	852
GsuI	CTGGAG	2 cut(s)	816, 977
HaeII	RGCGCY	1 cut(s)	1022
HapII	CCGG	6 cut(s)	220, 338, 430, 482, 630, 858
HgaI	GACGC	3 cut(s)	310, 454, 1316
HhaI	GCGC	3 cut(s)	328, 472, 1021
Hin1I	GRCGYC	3 cut(s)	360, 504, 936
Hin1II	CATG	4 cut(s)	1099, 1114, 1136, 1163
Hin6I	GCGC	3 cut(s)	326, 470, 1019
HinP1I	GCGC	3 cut(s)	326, 470, 1019
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HpaII	CCGG	6 cut(s)	220, 338, 430, 482, 630, 858
HphI	GGTGA	5 cut(s)	580, 760, 1175, 1281, 1361
Hpy166II	GTNNAC	6 cut(s)	24, 169, 196, 925, 1208, 1598
Hpy188I	TCNGA	7 cut(s)	52, 84, 216, 994, 1248, 1606, 1618
Hpy188III	TCNNGA	8 cut(s)	25, 179, 435, 635, 916, 1064, 1360, 1376
Hpy8I	GTNNAC	6 cut(s)	24, 169, 196, 925, 1208, 1598
Hpy99I	CGWCG	8 cut(s)	326, 362, 365, 470, 506, 509, 938, 1332
HpyAV	CCTTC	2 cut(s)	412, 556
HpyCH4III	ACNGT	2 cut(s)	88, 831
HpyCH4IV	ACGT	4 cut(s)	360, 504, 927, 936
HpyCH4V	TGCA	5 cut(s)	157, 809, 843, 1196, 1508
HpyF10VI	GCNNNNNNNGC	6 cut(s)	332, 476, 618, 840, 1136, 1514
HpyF3I	CTNAG	6 cut(s)	68, 295, 761, 1065, 1089, 1339
HpySE526I	ACGT	4 cut(s)	360, 504, 927, 936
Hsp92I	GRCGYC	3 cut(s)	360, 504, 936
Hsp92II	CATG	4 cut(s)	1099, 1114, 1136, 1163
HspAI	GCGC	3 cut(s)	326, 470, 1019
Ksp22I	TGATCA	1 cut(s)	1165
Kzo9I	GATC	1 cut(s)	1165
LmnI	GCTCC	5 cut(s)	216, 304, 340, 484, 1156
Lsp1109I	GCAGC	8 cut(s)	267, 315, 459, 939, 1492, 1504, 1507, 1587
LweI	GCATC	3 cut(s)	939, 1018, 1188
MaeI	CTAG	1 cut(s)	618
MaeII	ACGT	4 cut(s)	360, 504, 927, 936
MaeIII	GTNAC	3 cut(s)	726, 785, 973
MalI	GATC	1 cut(s)	1167
MboI	GATC	1 cut(s)	1165
MfeI	CAATTG	1 cut(s)	1211
MhlI	GDGCHC	1 cut(s)	1095
MluCI	AATT	8 cut(s)	60, 78, 140, 574, 721, 838, 1074, 1211
MlyI	GAGTC	2 cut(s)	1252, 1607
MmeI	TCCRAC	2 cut(s)	678, 849
MseI	TTAA	8 cut(s)	63, 378, 522, 683, 1059, 1230, 1317, 1488
MslI	CAYNNNNRTG	2 cut(s)	1100, 1473
MspA1I	CMGCKG	2 cut(s)	280, 1541
MspI	CCGG	6 cut(s)	220, 338, 430, 482, 630, 858
MspR9I	CCNGG	1 cut(s)	859
MunI	CAATTG	1 cut(s)	1211
MvnI	CGCG	2 cut(s)	326, 470
MwoI	GCNNNNNNNGC	6 cut(s)	332, 476, 618, 840, 1136, 1514
NciI	CCSGG	1 cut(s)	859
NdeII	GATC	1 cut(s)	1165
NlaIII	CATG	4 cut(s)	1099, 1114, 1136, 1163
NspV	TTCGAA	1 cut(s)	1400
PaeR7I	CTCGAG	1 cut(s)	1322
PcsI	WCGNNNNNNNCGW	1 cut(s)	933
PfeI	GAWTC	9 cut(s)	133, 182, 252, 426, 589, 626, 653, 1123, 1249
PleI	GAGTC	2 cut(s)	1251, 1607
PpsI	GAGTC	2 cut(s)	1251, 1607
PsiI	TTATAA	2 cut(s)	602, 1304
PspFI	CCCAGC	1 cut(s)	848
PspPI	GGNCC	1 cut(s)	247
PspXI	VCTCGAGB	1 cut(s)	1322
PvuII	CAGCTG	1 cut(s)	280
RseI	CAYNNNNRTG	2 cut(s)	1100, 1473
SalI	GTCGAC	1 cut(s)	167
SaqAI	TTAA	8 cut(s)	63, 378, 522, 683, 1059, 1230, 1317, 1488
Sau3AI	GATC	1 cut(s)	1165
Sau96I	GGNCC	1 cut(s)	247
SchI	GAGTC	2 cut(s)	1252, 1607
ScrFI	CCNGG	1 cut(s)	859
SduI	GDGCHC	1 cut(s)	1095
SfaNI	GCATC	3 cut(s)	939, 1018, 1188
Sfr274I	CTCGAG	1 cut(s)	1322
SfuI	TTCGAA	1 cut(s)	1400
SinI	GGWCC	1 cut(s)	247
SlaI	CTCGAG	1 cut(s)	1322
SmiMI	CAYNNNNRTG	2 cut(s)	1100, 1473
SmlI	CTYRAG	1 cut(s)	1322
SmoI	CTYRAG	1 cut(s)	1322
Sse9I	AATT	8 cut(s)	60, 78, 140, 574, 721, 838, 1074, 1211
SspI	AATATT	1 cut(s)	1049
SspMI	CTAG	1 cut(s)	618
StyD4I	CCNGG	1 cut(s)	857
TaaI	ACNGT	2 cut(s)	88, 831
TaiI	ACGT	4 cut(s)	363, 507, 930, 939
TaqII	GACCGA	2 cut(s)	264, 1258
TasI	AATT	8 cut(s)	60, 78, 140, 574, 721, 838, 1074, 1211
TauI	GCSGC	2 cut(s)	260, 263
TfiI	GAWTC	9 cut(s)	133, 182, 252, 426, 589, 626, 653, 1123, 1249
Tru1I	TTAA	8 cut(s)	63, 378, 522, 683, 1059, 1230, 1317, 1488
Tru9I	TTAA	8 cut(s)	63, 378, 522, 683, 1059, 1230, 1317, 1488
TscAI	CASTG	2 cut(s)	1146, 1507
TseI	GCWGC	8 cut(s)	280, 328, 472, 952, 1505, 1517, 1520, 1575
TspDTI	ATGAA	8 cut(s)	111, 431, 575, 1112, 1149, 1431, 1440, 1506
TspGWI	ACGGA	1 cut(s)	1576
TspRI	CASTG	2 cut(s)	1146, 1507
VpaK11BI	GGWCC	1 cut(s)	247
XapI	RAATTY	2 cut(s)	574, 721
XhoI	CTCGAG	1 cut(s)	1322
XmiI	GTMKAC	2 cut(s)	168, 195
XspI	CTAG	1 cut(s)	618
ZraI	GACGTC	3 cut(s)	361, 505, 937

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.