Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002351

Physical Location & Seq

Genomic Coordinates Reverse (-)

86270112 .. 86272547

Gene Structure 2436 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00148670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1467 bp

ATGGTTCCATCTCTAATCGAGTTCACGACTTCCTCAAATCCACCAAACTCCGAACCCCAAATTAAGCTAAGCCCATCAATTCAGACCGTTGTAGATGAAATCCACAAGGAAAACCCCAAACTCTCTCCCTTGATTCAACAATTCTACCAACCAATGCAAGCTCGGGTCGACCCGCCTCTCGAATCCATCTGGGTCTACACCGCATTGACATTTCGGAGCCGGAACCACCCAAAAGGCGACATCTTGGACCGAATCGCCGCCGCAAAGGACTTGTTTCAGCTGCTCTCCTCTTGCTCAGCTCCCTGCGGTTCCTCAAAGAGCGTCGCGCTGCTCGCTCCGGTGGTGCGGTTGGCACACGACGTCGTTTTGGATTTGTTTAAGAGGGACTTGGGGTTGAAGAAAGTGATGAAGGAGGTGAAGAATTTGGTGGGAGTGATTCTGGGGTTTACAAATGTGTGCTGTTCTAGCAGGGATTCGGGTCAGGAGGATCCTTTGATTGATTCGAGTTCGGGTTGGTCTTTTTCGGGTTTAAGTTGTGTTTGGTTGAACAGAGATGAGAATGTTAGGAGTTTGTTACCTTTAGTGAGTGAGGAGGTGATTGGTGGGCTTAGTGAGAGAGATGGGGATGTGAGTTACTTGGCTGGAGTTGTTATTGCAGAGGTTTTTTTGTTGAGACTCTGCTTGAATTGCAAAGCTGGGACTTCAGAGGAGGTGTTGGAGACAGAGTTGAGGACTTGGGCTGTTGGTTCCATTACTGGGTTCCATAATGTTTACGTTTTCGAGGTCCTTTTGAGGATGCTGCTTGAGAAGACTTTGCCTGTTACCTCCTTTTGTTCTGAAGACGAAGTTTTGTTGAGGAAAGTGCTGTATGATGCGATCATATTGGTCGAATATTCTTTCCTTAATGCTGAGAAAGCAATTCACATATCTGCTGAGCACATGAAAATGATTGCCATGAGAAGATTGATTCTTGCCCATGAAGCAGTGGAGTATTTTAGGGAGCATGGTGATCAAAGGAGAAGCATCTCTTATACAACTGCATTTTCCGGTTCACAATTGTATTCCCAAATTGTTAAGTGGGTAAAGAATCAGATTCCTGTGGAGGATAGCTCAGTCAAATCAGAGGGAAAATCACCTAAAGCTCTTATAAAATGGCTTCTTAACCTCGAGCGTCAAGGCTTCTTAGCATTTGGTGATAGTATCTTGAAGTATCATAGTCTTGATATGTCTAAACCACCAGCTTCAAAGTTAGACAGCAATGAAGTTGATGAAAACCCTATCTTTTACATCGACAACAAGAGGCGAGGAGAACATACAGATGATGGAAAAGTTAATGAATACATTAGTGCTGCATTTTTAGCTGCTGCCAATACAATGACATCAGAGGAGAAAAGAGGGAAAAAACGAAAAGGGGAAAACAGCGAGAGTGAAGAGGAGAGTTCACTCTCTGATGAGGACTCGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

488

Amino Acids

54.53

Weight (kDa)

5.37

Isoelectric Point (pI)

50.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11780
fragaria_vesca	FvH4_1g07060
malus_domestica	MD02G1074500.v1.1
prunus_persica	Prupe.7G213400_v2.0.a1
pyrus_communis	pycom02g05890 pycom15g18070
rosa_chinensis	RchiOBHm_Chr2g0092961 RchiOBHm_Chr4g0406051 RchiOBHm_Chr4g0425381
rosa_laevigata	RLG00000008045 RLG00000016353 RLG00000020789 RLG00000033390
rosa_multiflora	Rmu_co8270331.1_g000001 Rmu_sc0000596.1_g000010 Rmu_sc0000965.1_g000017 Rmu_sc0002862.1_g000003 Rmu_sc0002882.1_g000032 Rmu_sc0003902.1_g000018 Rmu_sc0006662.1_g000006 Rmu_sc0010963.1_g000006 Rmu_sc0012535.1_g000006
rosa_roxburghii	Rroxscaffold_2G00148670
rosa_rugosa	Rorug02G0030700
rosa_samantha	Rh1DG034900 Rh2AG076700 Rh2BG078000 Rh2CG080200 Rh2DG075300 Rh2DG566700 Rh3BG038800 Rh3CG266800 Rh3DG038000 Rh3DG262900 Rh6AG284700 Rh6BG048400 Rh6BG286100 Rh6CG287100 Rh7AG478700
rosa_wichuraiana	Rw2G006950 Rw3G003880 Rw3G021260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1148
AatII	GACGTC	1 cut(s)	363
AccI	GTMKAC	2 cut(s)	168, 195
AccII	CGCG	1 cut(s)	326
AciI	CCGC	6 cut(s)	173, 201, 258, 261, 306, 346
AclWI	GGATC	2 cut(s)	482, 495
AcsI	RAATTY	1 cut(s)	421
AcuI	CTGAAG	2 cut(s)	687, 858
AcyI	GRCGYC	1 cut(s)	360
AfiI	CCNNNNNNNGG	1 cut(s)	756
AgsI	TTSAA	6 cut(s)	137, 397, 547, 685, 1207, 1245
AluBI	AGCT	9 cut(s)	67, 161, 280, 299, 695, 1110, 1142, 1241, 1361
AluI	AGCT	9 cut(s)	67, 161, 280, 299, 695, 1110, 1142, 1241, 1361
Alw21I	GWGCWC	1 cut(s)	939
Alw26I	GTCTC	2 cut(s)	667, 713
AlwI	GGATC	2 cut(s)	482, 495
Ama87I	CYCGRG	2 cut(s)	162, 1166
ApeKI	GCWGC	6 cut(s)	280, 328, 799, 1349, 1361, 1364
ApoI	RAATTY	1 cut(s)	421
AspLEI	GCGC	1 cut(s)	328
AspS9I	GGNCC	2 cut(s)	247, 784
AsuHPI	GGTGA	5 cut(s)	427, 607, 1019, 1125, 1205
AvaI	CYCGRG	2 cut(s)	162, 1166
AvaII	GGWCC	2 cut(s)	247, 784
BamHI	GGATCC	1 cut(s)	487
BbsI	GAAGAC	2 cut(s)	815, 846
Bbv12I	GWGCWC	1 cut(s)	939
BbvI	GCAGC	6 cut(s)	267, 315, 786, 1336, 1348, 1351
BccI	CCATC	5 cut(s)	16, 82, 194, 614, 1316
BclI	TGATCA	1 cut(s)	1009
BcoDI	GTCTC	2 cut(s)	667, 713
BfaI	CTAG	1 cut(s)	465
BisI	GCNGC	8 cut(s)	258, 261, 281, 329, 800, 1350, 1362, 1365
BlpI	GCTNAGC	3 cut(s)	68, 295, 933
BlsI	GCNGC	8 cut(s)	259, 262, 282, 330, 801, 1351, 1363, 1366
Bme18I	GGWCC	2 cut(s)	247, 784
BmeT110I	CYCGRG	2 cut(s)	162, 1166
BmgT120I	GGNCC	2 cut(s)	247, 784
BmiI	GGNNCC	7 cut(s)	6, 218, 224, 310, 489, 748, 761
BmrI	ACTGGG	1 cut(s)	765
BmsI	GCATC	3 cut(s)	786, 862, 1032
BmuI	ACTGGG	1 cut(s)	765
BpiI	GAAGAC	2 cut(s)	815, 846
BplI	GAGNNNNNCTC	2 cut(s)	1094, 1126
BpmI	CTGGAG	1 cut(s)	663
Bpu1102I	GCTNAGC	3 cut(s)	68, 295, 933
BpuEI	CTTGAG	1 cut(s)	824
BsaHI	GRCGYC	1 cut(s)	360
BsaWI	WCCGGW	2 cut(s)	337, 1046
BsaXI	ACNNNNNCTCC	2 cut(s)	710, 740
Bsc4I	CCNNNNNNNGG	1 cut(s)	756
Bse1I	ACTGG	1 cut(s)	760
Bse3DI	GCAATG	1 cut(s)	1264
BseGI	GGATG	2 cut(s)	631, 801
BseLI	CCNNNNNNNGG	1 cut(s)	756
BseMI	GCAATG	1 cut(s)	1264
BseMII	CTCAG	4 cut(s)	309, 900, 924, 1125
BseNI	ACTGG	1 cut(s)	760
BseRI	GAGGAG	6 cut(s)	277, 605, 722, 1320, 1400, 1448
BseXI	GCAGC	6 cut(s)	267, 315, 786, 1336, 1348, 1351
BseYI	CCCAGC	1 cut(s)	695
Bsh1236I	CGCG	1 cut(s)	326
BsiHKAI	GWGCWC	1 cut(s)	939
BsiHKCI	CYCGRG	2 cut(s)	162, 1166
BsiSI	CCGG	3 cut(s)	220, 338, 1047
BslFI	GGGAC	2 cut(s)	398, 712
BslI	CCNNNNNNNGG	1 cut(s)	756
BsmAI	GTCTC	2 cut(s)	667, 713
BsmFI	GGGAC	2 cut(s)	398, 712
BsoBI	CYCGRG	2 cut(s)	162, 1166
Bsp1286I	GDGCHC	1 cut(s)	939
Bsp143I	GATC	3 cut(s)	487, 876, 1009
Bsp1720I	GCTNAGC	3 cut(s)	68, 295, 933
BspACI	CCGC	6 cut(s)	173, 201, 258, 261, 306, 346
BspCNI	CTCAG	4 cut(s)	308, 901, 925, 1124
BspFNI	CGCG	1 cut(s)	326
BspLI	GGNNCC	7 cut(s)	6, 218, 224, 310, 489, 748, 761
BspPI	GGATC	2 cut(s)	482, 495
BsrDI	GCAATG	1 cut(s)	1264
BsrI	ACTGG	1 cut(s)	760
BssMI	GATC	3 cut(s)	487, 876, 1009
BssNI	GRCGYC	1 cut(s)	360
Bst4CI	ACNGT	1 cut(s)	88
Bst6I	CTCTTC	1 cut(s)	1425
BstACI	GRCGYC	1 cut(s)	360
BstC8I	GCNNGC	2 cut(s)	159, 333
BstDEI	CTNAG	7 cut(s)	68, 295, 608, 909, 933, 1111, 1183
BstF5I	GGATG	2 cut(s)	631, 801
BstFNI	CGCG	1 cut(s)	326
BstHHI	GCGC	1 cut(s)	328
BstKTI	GATC	3 cut(s)	490, 879, 1012
BstMAI	GTCTC	2 cut(s)	667, 713
BstMBI	GATC	3 cut(s)	487, 876, 1009
BstMWI	GCNNNNNNNGC	6 cut(s)	332, 465, 687, 914, 980, 1358
BstUI	CGCG	1 cut(s)	326
BstV1I	GCAGC	6 cut(s)	267, 315, 786, 1336, 1348, 1351
BstV2I	GAAGAC	2 cut(s)	815, 846
BstX2I	RGATCY	1 cut(s)	487
BstYI	RGATCY	1 cut(s)	487
BtsCI	GGATG	2 cut(s)	631, 801
BtsI	GCAGTG	1 cut(s)	990
BtsIMutI	CAGTG	1 cut(s)	990
Cac8I	GCNNGC	2 cut(s)	159, 333
CfoI	GCGC	1 cut(s)	328
Cfr13I	GGNCC	2 cut(s)	247, 784
CseI	GACGC	2 cut(s)	310, 1160
CviAII	CATG	4 cut(s)	940, 955, 977, 1004
DdeI	CTNAG	7 cut(s)	68, 295, 608, 909, 933, 1111, 1183
DpnI	GATC	3 cut(s)	489, 878, 1011
DpnII	GATC	3 cut(s)	487, 876, 1009
Eam1104I	CTCTTC	1 cut(s)	1425
EarI	CTCTTC	1 cut(s)	1425
Eco47I	GGWCC	2 cut(s)	247, 784
Eco57I	CTGAAG	2 cut(s)	687, 858
Eco88I	CYCGRG	2 cut(s)	162, 1166
EcoO109I	RGGNCCY	1 cut(s)	784
FaeI	CATG	4 cut(s)	943, 958, 980, 1007
FalI	AAGNNNNNCTT	4 cut(s)	371, 403, 1012, 1044
FaqI	GGGAC	2 cut(s)	398, 712
FatI	CATG	4 cut(s)	939, 954, 976, 1003
FauI	CCCGC	1 cut(s)	180
FbaI	TGATCA	1 cut(s)	1009
FblI	GTMKAC	2 cut(s)	168, 195
Fnu4HI	GCNGC	8 cut(s)	258, 261, 281, 329, 800, 1350, 1362, 1365
FokI	GGATG	2 cut(s)	638, 808
Fsp4HI	GCNGC	8 cut(s)	258, 261, 281, 329, 800, 1350, 1362, 1365
FspBI	CTAG	1 cut(s)	465
GlaI	GCGC	1 cut(s)	327
GluI	GCNGC	8 cut(s)	258, 261, 281, 329, 800, 1350, 1362, 1365
GsaI	CCCAGC	1 cut(s)	699
GsuI	CTGGAG	1 cut(s)	663
HapII	CCGG	3 cut(s)	220, 338, 1047
HgaI	GACGC	2 cut(s)	310, 1160
HhaI	GCGC	1 cut(s)	328
Hin1I	GRCGYC	1 cut(s)	360
Hin1II	CATG	4 cut(s)	943, 958, 980, 1007
Hin6I	GCGC	1 cut(s)	326
HinP1I	GCGC	1 cut(s)	326
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HpaII	CCGG	3 cut(s)	220, 338, 1047
HphI	GGTGA	5 cut(s)	427, 607, 1019, 1125, 1205
Hpy166II	GTNNAC	7 cut(s)	24, 169, 196, 447, 772, 1052, 1442
Hpy188III	TCNNGA	5 cut(s)	25, 179, 482, 1204, 1220
Hpy8I	GTNNAC	7 cut(s)	24, 169, 196, 447, 772, 1052, 1442
Hpy99I	CGWCG	3 cut(s)	326, 362, 365
HpyAV	CCTTC	1 cut(s)	403
HpyCH4III	ACNGT	1 cut(s)	88
HpyCH4IV	ACGT	2 cut(s)	360, 774
HpyCH4V	TGCA	5 cut(s)	157, 656, 690, 1040, 1352
HpyF10VI	GCNNNNNNNGC	6 cut(s)	332, 465, 687, 914, 980, 1358
HpyF3I	CTNAG	7 cut(s)	68, 295, 608, 909, 933, 1111, 1183
HpySE526I	ACGT	2 cut(s)	360, 774
Hsp92I	GRCGYC	1 cut(s)	360
Hsp92II	CATG	4 cut(s)	943, 958, 980, 1007
HspAI	GCGC	1 cut(s)	326
Ksp22I	TGATCA	1 cut(s)	1009
Kzo9I	GATC	3 cut(s)	487, 876, 1009
LmnI	GCTCC	4 cut(s)	216, 304, 340, 1000
Lsp1109I	GCAGC	6 cut(s)	267, 315, 786, 1336, 1348, 1351
LweI	GCATC	3 cut(s)	786, 862, 1032
MaeI	CTAG	1 cut(s)	465
MaeII	ACGT	2 cut(s)	360, 774
MaeIII	GTNAC	3 cut(s)	573, 632, 820
MalI	GATC	3 cut(s)	489, 878, 1011
MboI	GATC	3 cut(s)	487, 876, 1009
MboII	GAAGA	6 cut(s)	409, 430, 820, 851, 972, 1442
MfeI	CAATTG	1 cut(s)	1055
MflI	RGATCY	1 cut(s)	487
MhlI	GDGCHC	1 cut(s)	939
MluCI	AATT	8 cut(s)	60, 78, 140, 421, 685, 918, 1055, 1068
MlyI	GAGTC	2 cut(s)	669, 1451
MmeI	TCCRAC	1 cut(s)	696
MseI	TTAA	7 cut(s)	63, 378, 530, 903, 1074, 1161, 1332
MslI	CAYNNNNRTG	2 cut(s)	944, 1317
MspA1I	CMGCKG	1 cut(s)	280
MspI	CCGG	3 cut(s)	220, 338, 1047
MunI	CAATTG	1 cut(s)	1055
MvnI	CGCG	1 cut(s)	326
MwoI	GCNNNNNNNGC	6 cut(s)	332, 465, 687, 914, 980, 1358
NdeII	GATC	3 cut(s)	487, 876, 1009
NlaIII	CATG	4 cut(s)	943, 958, 980, 1007
NlaIV	GGNNCC	7 cut(s)	6, 218, 224, 310, 489, 748, 761
PaeR7I	CTCGAG	1 cut(s)	1166
PfeI	GAWTC	9 cut(s)	133, 182, 252, 436, 473, 500, 967, 1087, 1093
PkrI	GCNGC	8 cut(s)	259, 262, 282, 330, 801, 1351, 1363, 1366
PleI	GAGTC	2 cut(s)	669, 1451
PpsI	GAGTC	2 cut(s)	669, 1451
PpuMI	RGGWCCY	1 cut(s)	784
PsiI	TTATAA	1 cut(s)	1148
Psp5II	RGGWCCY	1 cut(s)	784
PspFI	CCCAGC	1 cut(s)	695
PspN4I	GGNNCC	7 cut(s)	6, 218, 224, 310, 489, 748, 761
PspPI	GGNCC	2 cut(s)	247, 784
PspPPI	RGGWCCY	1 cut(s)	784
PspXI	VCTCGAGB	1 cut(s)	1166
PsuI	RGATCY	1 cut(s)	487
PvuII	CAGCTG	1 cut(s)	280
RseI	CAYNNNNRTG	2 cut(s)	944, 1317
SalI	GTCGAC	1 cut(s)	167
SaqAI	TTAA	7 cut(s)	63, 378, 530, 903, 1074, 1161, 1332
SatI	GCNGC	8 cut(s)	258, 261, 281, 329, 800, 1350, 1362, 1365
Sau3AI	GATC	3 cut(s)	487, 876, 1009
Sau96I	GGNCC	2 cut(s)	247, 784
SchI	GAGTC	2 cut(s)	669, 1451
SduI	GDGCHC	1 cut(s)	939
SfaNI	GCATC	3 cut(s)	786, 862, 1032
Sfr274I	CTCGAG	1 cut(s)	1166
SinI	GGWCC	2 cut(s)	247, 784
SlaI	CTCGAG	1 cut(s)	1166
SmiMI	CAYNNNNRTG	2 cut(s)	944, 1317
SmlI	CTYRAG	2 cut(s)	803, 1166
SmoI	CTYRAG	2 cut(s)	803, 1166
Sse9I	AATT	8 cut(s)	60, 78, 140, 421, 685, 918, 1055, 1068
SsiI	CCGC	6 cut(s)	173, 201, 258, 261, 306, 346
SspI	AATATT	1 cut(s)	893
SspMI	CTAG	1 cut(s)	465
TaaI	ACNGT	1 cut(s)	88
TaiI	ACGT	2 cut(s)	363, 777
TaqI	TCGA	8 cut(s)	18, 168, 180, 503, 780, 888, 1167, 1290
TaqII	GACCGA	1 cut(s)	264
TasI	AATT	8 cut(s)	60, 78, 140, 421, 685, 918, 1055, 1068
TauI	GCSGC	2 cut(s)	260, 263
TfiI	GAWTC	9 cut(s)	133, 182, 252, 436, 473, 500, 967, 1087, 1093
Tru1I	TTAA	7 cut(s)	63, 378, 530, 903, 1074, 1161, 1332
Tru9I	TTAA	7 cut(s)	63, 378, 530, 903, 1074, 1161, 1332
TscAI	CASTG	1 cut(s)	990
TseI	GCWGC	6 cut(s)	280, 328, 799, 1349, 1361, 1364
TspDTI	ATGAA	7 cut(s)	111, 422, 956, 993, 1275, 1284, 1350
TspRI	CASTG	1 cut(s)	990
VpaK11BI	GGWCC	2 cut(s)	247, 784
XapI	RAATTY	1 cut(s)	421
XhoI	CTCGAG	1 cut(s)	1166
XmiI	GTMKAC	2 cut(s)	168, 195
XspI	CTAG	1 cut(s)	465
ZraI	GACGTC	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.