Rw3G021260

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0002351
Physical Location & Seq
Reverse (-)
25587201 .. 25592737
5537 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G021260.1

Sequence Viewer

Length: 1104 bp
ATGCAACAGGGAAGGTTAGGGTTTCCTACAAGCTCAAAAAGGTTAGGGTTTTACTTGAGCTCAGCTCCTACTAGCTCTCACTACAAATCAAACAGTTTCACCATAGTTCTATCTCTAATCGAGTTCACGACTTCCTCAAATCCACCGAACTCCGAACCCCAAATTAAGCTAAGCCCTTCAATTCAAACCGTTGAAAACCCCAAACTCTCTCCCTTGATTCAACAATTCTACCAACCAATGCAATCTCGGGTCGACCCGCCTCTTGAATCCATCTGGGTCTACACCGCATTGACATTTCGGAGCCGAAAACACCCAAAAGGCGACGTCTTGGACCGAATCTCCGTCACAAAGTACTTATTTCAGCTGCTCTCCTCTTGCTCAACTCCCTGCGGTTCCTCAAAGAGCGTAGCGCTGCTCGCTCCAGTGGTGCGGTTGGCACACGATGTCGTTTTGGATTTGTTTAAGAGGGAGTTGGGGTTGAAGAAAGAGAAGAAAGTGATGAATGAGGTGAAGAATTTGGTGGGAGTGATTCTGGGGTTTATAAATGTATGTTGTTCTAGCAGTGATTCGAGTCAGGAGGAAGCTTTGATTGATTCGAGTTCGGGTTGGTCTTTTTTGGGTTTAAGTTATGTTTGGTTGAACATAGATGAGAATGAGGTGATTGGTGGGCTTAGTGAGAGAGATGGGGATGTGAGCTACTTGGTTGGAGTTGTTATTGCTGAGGTTTTTTTGTTGAGACTGTGCTTGAATTACAAAGCTGGGACTTCAGGGGAGGTGTTGGAGACAGAGTTGAGGACTTGTACGACGTTGATACAAAAAATGAGTCCAGGTATAACATTGATAACTTTGAAAGTTCATGTATCATTTCAAAAATCCTCGAAGACACCTTCTCTGACCATTTGGTTCCACCCAACTCTAAGAGCAAATGCAGCGGTAGACTGGTTGACTGACCAATTGGAGAAAAGAGATAGTTTGGCTGATGCAGCGACCTTGTCAATCGGAGTTGAAATCGAAATCTCAGCTGGGCCTTGCTGTCGAGTGTATTCGCCGCAACTGGAGAAAGCTCCGATCTCTTTTCTCACCACCTCAGAGCCTCCTTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

367

Amino Acids

40.36

Weight (kDa)

6.95

Isoelectric Point (pI)

50.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 542
AatII GACGTC 1 cut(s) 327
AccI GTMKAC 3 cut(s) 252, 279, 936
AciI CCGC 6 cut(s) 257, 285, 390, 430, 932, 1049
AcsI RAATTY 1 cut(s) 514
AcuI CTGAAG 1 cut(s) 750
AcyI GRCGYC 1 cut(s) 324
AfaI GTAC 2 cut(s) 353, 802
AfeI AGCGCT 1 cut(s) 411
AjnI CCWGG 1 cut(s) 826
Alw21I GWGCWC 1 cut(s) 62
Alw26I GTCTC 2 cut(s) 730, 776
Ama87I CYCGRG 1 cut(s) 246
Aor51HI AGCGCT 1 cut(s) 411
AoxI GGCC 1 cut(s) 1025
ApeKI GCWGC 4 cut(s) 364, 412, 929, 983
ApoI RAATTY 1 cut(s) 514
ArsI GACNNNNNNTTYG 2 cut(s) 808, 840
AspLEI GCGC 1 cut(s) 412
AspS9I GGNCC 2 cut(s) 331, 1025
AsuHPI GGTGA 4 cut(s) 91, 520, 670, 1072
AvaI CYCGRG 1 cut(s) 246
AvaII GGWCC 1 cut(s) 331
BanII GRGCYC 1 cut(s) 62
BbsI GAAGAC 1 cut(s) 887
Bbv12I GWGCWC 1 cut(s) 62
BbvCI CCTCAGC 1 cut(s) 720
BbvI GCAGC 4 cut(s) 351, 399, 941, 995
BccI CCATC 2 cut(s) 278, 677
BciT130I CCWGG 1 cut(s) 828
BcoDI GTCTC 2 cut(s) 730, 776
BfaI CTAG 2 cut(s) 72, 558
BfoI RGCGCY 1 cut(s) 413
BisI GCNGC 5 cut(s) 365, 413, 930, 984, 1049
BlpI GCTNAGC 2 cut(s) 61, 170
BlsI GCNGC 5 cut(s) 366, 414, 931, 985, 1050
BmcAI AGTACT 1 cut(s) 353
Bme1390I CCNGG 1 cut(s) 828
Bme18I GGWCC 1 cut(s) 331
BmeT110I CYCGRG 1 cut(s) 246
BmgT120I GGNCC 2 cut(s) 331, 1025
BmiI GGNNCC 3 cut(s) 302, 394, 905
BmrFI CCNGG 1 cut(s) 828
BmsI GCATC 1 cut(s) 970
BpiI GAAGAC 1 cut(s) 887
BplI GAGNNNNNCTC 2 cut(s) 49, 81
BpmI CTGGAG 2 cut(s) 405, 1076
Bpu10I CCTNAGC 1 cut(s) 720
Bpu1102I GCTNAGC 2 cut(s) 61, 170
BpuEI CTTGAG 1 cut(s) 76
BsaHI GRCGYC 1 cut(s) 324
BsaXI ACNNNNNCTCC 6 cut(s) 323, 353, 461, 491, 773, 803
Bse1I ACTGG 3 cut(s) 422, 944, 1059
BseBI CCWGG 1 cut(s) 828
BseGI GGATG 1 cut(s) 694
BseMII CTCAG 4 cut(s) 75, 711, 1032, 1101
BseNI ACTGG 3 cut(s) 422, 944, 1059
BseRI GAGGAG 1 cut(s) 361
BseXI GCAGC 4 cut(s) 351, 399, 941, 995
BseYI CCCAGC 2 cut(s) 758, 1022
BshFI GGCC 1 cut(s) 1027
BsiHKAI GWGCWC 1 cut(s) 62
BsiHKCI CYCGRG 1 cut(s) 246
BslFI GGGAC 1 cut(s) 775
BsmAI GTCTC 2 cut(s) 730, 776
BsmFI GGGAC 1 cut(s) 775
BsnI GGCC 1 cut(s) 1027
BsoBI CYCGRG 1 cut(s) 246
Bsp1286I GDGCHC 1 cut(s) 62
Bsp143I GATC 1 cut(s) 1068
Bsp1720I GCTNAGC 2 cut(s) 61, 170
BspACI CCGC 6 cut(s) 257, 285, 390, 430, 932, 1049
BspANI GGCC 1 cut(s) 1027
BspCNI CTCAG 4 cut(s) 74, 712, 1031, 1100
BspLI GGNNCC 3 cut(s) 302, 394, 905
BsrI ACTGG 3 cut(s) 422, 944, 1059
BssMI GATC 1 cut(s) 1068
BssNI GRCGYC 1 cut(s) 324
Bst2UI CCWGG 1 cut(s) 828
Bst4CI ACNGT 3 cut(s) 95, 190, 741
BstACI GRCGYC 1 cut(s) 324
BstC8I GCNNGC 1 cut(s) 417
BstDEI CTNAG 7 cut(s) 61, 170, 671, 720, 917, 1018, 1087
BstF5I GGATG 1 cut(s) 694
BstH2I RGCGCY 1 cut(s) 413
BstHHI GCGC 1 cut(s) 412
BstKTI GATC 1 cut(s) 1071
BstMAI GTCTC 2 cut(s) 730, 776
BstMBI GATC 1 cut(s) 1068
BstMWI GCNNNNNNNGC 3 cut(s) 416, 929, 983
BstNI CCWGG 1 cut(s) 828
BstSCI CCNGG 1 cut(s) 826
BstV1I GCAGC 4 cut(s) 351, 399, 941, 995
BstV2I GAAGAC 1 cut(s) 887
BsuRI GGCC 1 cut(s) 1027
BtsCI GGATG 1 cut(s) 694
BtsI GCAGTG 1 cut(s) 568
BtsIMutI CAGTG 2 cut(s) 429, 568
Cac8I GCNNGC 1 cut(s) 417
CfoI GCGC 1 cut(s) 412
Cfr13I GGNCC 2 cut(s) 331, 1025
Csp6I GTAC 2 cut(s) 352, 801
CviAII CATG 1 cut(s) 857
CviQI GTAC 2 cut(s) 352, 801
DdeI CTNAG 7 cut(s) 61, 170, 671, 720, 917, 1018, 1087
DpnI GATC 1 cut(s) 1070
DpnII GATC 1 cut(s) 1068
Ecl136II GAGCTC 1 cut(s) 60
Eco24I GRGCYC 1 cut(s) 62
Eco47I GGWCC 1 cut(s) 331
Eco47III AGCGCT 1 cut(s) 411
Eco53kI GAGCTC 1 cut(s) 60
Eco57I CTGAAG 1 cut(s) 750
Eco88I CYCGRG 1 cut(s) 246
EcoICRI GAGCTC 1 cut(s) 60
EcoRII CCWGG 1 cut(s) 826
EcoT38I GRGCYC 1 cut(s) 62
FaeI CATG 1 cut(s) 860
FaiI YATR 7 cut(s) 104, 542, 550, 630, 644, 833, 858
FaqI GGGAC 1 cut(s) 775
FatI CATG 1 cut(s) 856
FauI CCCGC 1 cut(s) 264
FblI GTMKAC 3 cut(s) 252, 279, 936
Fnu4HI GCNGC 5 cut(s) 365, 413, 930, 984, 1049
FokI GGATG 1 cut(s) 701
FriOI GRGCYC 1 cut(s) 62
Fsp4HI GCNGC 5 cut(s) 365, 413, 930, 984, 1049
FspBI CTAG 2 cut(s) 72, 558
GlaI GCGC 1 cut(s) 411
GluI GCNGC 5 cut(s) 365, 413, 930, 984, 1049
GsaI CCCAGC 2 cut(s) 762, 1026
GsuI CTGGAG 2 cut(s) 405, 1076
HaeII RGCGCY 1 cut(s) 413
HaeIII GGCC 1 cut(s) 1027
HhaI GCGC 1 cut(s) 412
Hin1I GRCGYC 1 cut(s) 324
Hin1II CATG 1 cut(s) 860
Hin6I GCGC 1 cut(s) 410
HinP1I GCGC 1 cut(s) 410
HincII GTYRAC 2 cut(s) 253, 945
HindII GTYRAC 2 cut(s) 253, 945
HindIII AAGCTT 1 cut(s) 582
HinfI GANTC 8 cut(s) 217, 266, 336, 529, 566, 571, 593, 823
HphI GGTGA 4 cut(s) 91, 520, 670, 1072
Hpy166II GTNNAC 5 cut(s) 126, 253, 280, 937, 945
Hpy188I TCNGA 6 cut(s) 154, 300, 894, 1001, 1068, 1090
Hpy188III TCNNGA 4 cut(s) 127, 263, 575, 1101
Hpy8I GTNNAC 5 cut(s) 126, 253, 280, 937, 945
Hpy99I CGWCG 2 cut(s) 326, 808
HpyAV CCTTC 3 cut(s) 6, 186, 897
HpyCH4III ACNGT 3 cut(s) 95, 190, 741
HpyCH4IV ACGT 2 cut(s) 324, 806
HpyCH4V TGCA 4 cut(s) 4, 241, 929, 983
HpyF10VI GCNNNNNNNGC 3 cut(s) 416, 929, 983
HpyF3I CTNAG 7 cut(s) 61, 170, 671, 720, 917, 1018, 1087
HpySE526I ACGT 2 cut(s) 324, 806
Hsp92I GRCGYC 1 cut(s) 324
Hsp92II CATG 1 cut(s) 860
HspAI GCGC 1 cut(s) 410
Kzo9I GATC 1 cut(s) 1068
LmnI GCTCC 4 cut(s) 70, 300, 424, 1069
Lsp1109I GCAGC 4 cut(s) 351, 399, 941, 995
LweI GCATC 1 cut(s) 970
MaeI CTAG 2 cut(s) 72, 558
MaeII ACGT 2 cut(s) 324, 806
MaeIII GTNAC 1 cut(s) 343
MalI GATC 1 cut(s) 1070
MboI GATC 1 cut(s) 1068
MboII GAAGA 4 cut(s) 493, 502, 523, 892
MfeI CAATTG 1 cut(s) 953
MhlI GDGCHC 1 cut(s) 62
MluCI AATT 6 cut(s) 162, 180, 224, 514, 748, 953
MlyI GAGTC 2 cut(s) 580, 832
MmeI TCCRAC 2 cut(s) 685, 759
MseI TTAA 3 cut(s) 165, 462, 623
MspA1I CMGCKG 3 cut(s) 364, 932, 1022
MspR9I CCNGG 1 cut(s) 828
MunI CAATTG 1 cut(s) 953
MvaI CCWGG 1 cut(s) 828
MwoI GCNNNNNNNGC 3 cut(s) 416, 929, 983
NdeII GATC 1 cut(s) 1068
NlaIII CATG 1 cut(s) 860
NlaIV GGNNCC 3 cut(s) 302, 394, 905
NmuCI GTSAC 1 cut(s) 343
PfeI GAWTC 6 cut(s) 217, 266, 336, 529, 566, 593
PflFI GACNNNGTC 1 cut(s) 991
PkrI GCNGC 5 cut(s) 366, 414, 931, 985, 1050
PleI GAGTC 2 cut(s) 579, 831
PpsI GAGTC 2 cut(s) 579, 831
PsiI TTATAA 1 cut(s) 542
Psp124BI GAGCTC 1 cut(s) 62
Psp6I CCWGG 1 cut(s) 826
PspFI CCCAGC 2 cut(s) 758, 1022
PspGI CCWGG 1 cut(s) 826
PspN4I GGNNCC 3 cut(s) 302, 394, 905
PspPI GGNCC 2 cut(s) 331, 1025
PsyI GACNNNGTC 1 cut(s) 991
PvuII CAGCTG 2 cut(s) 364, 1022
RsaI GTAC 2 cut(s) 353, 802
RsaNI GTAC 2 cut(s) 352, 801
SacI GAGCTC 1 cut(s) 62
SalI GTCGAC 1 cut(s) 251
SaqAI TTAA 3 cut(s) 165, 462, 623
SatI GCNGC 5 cut(s) 365, 413, 930, 984, 1049
Sau3AI GATC 1 cut(s) 1068
Sau96I GGNCC 2 cut(s) 331, 1025
ScaI AGTACT 1 cut(s) 353
SchI GAGTC 2 cut(s) 580, 832
ScrFI CCNGG 1 cut(s) 828
SduI GDGCHC 1 cut(s) 62
SfaNI GCATC 1 cut(s) 970
SinI GGWCC 1 cut(s) 331
SmlI CTYRAG 1 cut(s) 55
SmoI CTYRAG 1 cut(s) 55
Sse9I AATT 6 cut(s) 162, 180, 224, 514, 748, 953
SsiI CCGC 6 cut(s) 257, 285, 390, 430, 932, 1049
SspMI CTAG 2 cut(s) 72, 558
SstI GAGCTC 1 cut(s) 62
StyD4I CCNGG 1 cut(s) 826
TaaI ACNGT 3 cut(s) 95, 190, 741
TaiI ACGT 2 cut(s) 327, 809
TaqI TCGA 7 cut(s) 120, 252, 569, 596, 878, 1011, 1036
TaqII GACCGA 1 cut(s) 348
TasI AATT 6 cut(s) 162, 180, 224, 514, 748, 953
TatI WGTACW 1 cut(s) 351
TauI GCSGC 1 cut(s) 1051
TfiI GAWTC 6 cut(s) 217, 266, 336, 529, 566, 593
Tru1I TTAA 3 cut(s) 165, 462, 623
Tru9I TTAA 3 cut(s) 165, 462, 623
TscAI CASTG 2 cut(s) 429, 568
TseFI GTSAC 1 cut(s) 343
TseI GCWGC 4 cut(s) 364, 412, 929, 983
Tsp45I GTSAC 1 cut(s) 343
TspDTI ATGAA 2 cut(s) 515, 845
TspGWI ACGGA 1 cut(s) 331
TspRI CASTG 2 cut(s) 429, 568
Tth111I GACNNNGTC 1 cut(s) 991
VpaK11BI GGWCC 1 cut(s) 331
XapI RAATTY 1 cut(s) 514
XmiI GTMKAC 3 cut(s) 252, 279, 936
XspI CTAG 2 cut(s) 72, 558
ZraI GACGTC 1 cut(s) 325
ZrmI AGTACT 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.