Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0002351

Physical Location & Seq

Genomic Coordinates Reverse (-)

8027279 .. 8027968

Gene Structure 690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG048400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGTTCCATCTCTAATCGAGTTCACGACTTCCTCAAATCCACCAAACTCCGAACCCCAAATTAAGCTAAGCCCATCAATTCAGACCGTTGTAGATGAAATCCACAAGGAAAACCCCAAACTCTCTCCCTTGATTCAACAATTCTACCAACCAATGCAATCTCGGGTCGACCCGCCTCTCGAATCCATCTGGGTCTACACCGCATTGACATTTTGGAGCCGGAACCACCCAAAAGGCAACATCTTGGACCGAATCACCTCCGCAAAGGACTTGTTTCAGCTGCTCTCCTCTTGCTCAGCTCCCTGCGTTTGCTCAAAAAGCGTCGCGCTGCTCGCTCCGGTGGTGCGATTGGCACACGACGTCGTTTTGGATTTGTTTAAGAGGGAGTCAGGGTTAAAGAAAGAGAAGAAAGTGATGAAGGAGGTGAAGAATTTGGTGGGAGTGATTCTGGGGTTTATAAATGTGTGTTGTTCTTGCAGGGATTCGGGTCAGGAGGAACCTTTGATTGATTCGAGTTCGGGTTGTTCTTTTTCGGGTTTCAGTTGTGTTTGGTTAAACAGAGATGAGACTGTTAGGAATTTGTTACCTTTAGTGAGTGAGGAGGTGATTGGTGGGGATGTGAGCTACTTGACTGGAGTTGTTATTGCAGAGGTTTTTTTTGTTGAGACTGTGCTTGAATTGCAAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

229

Amino Acids

25.41

Weight (kDa)

5.48

Isoelectric Point (pI)

50.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11780
fragaria_vesca	FvH4_1g07060
malus_domestica	MD02G1074500.v1.1
prunus_persica	Prupe.7G213400_v2.0.a1
pyrus_communis	pycom02g05890 pycom15g18070
rosa_chinensis	RchiOBHm_Chr2g0092961 RchiOBHm_Chr4g0406051 RchiOBHm_Chr4g0425381
rosa_laevigata	RLG00000008045 RLG00000016353 RLG00000020789 RLG00000033390
rosa_multiflora	Rmu_co8270331.1_g000001 Rmu_sc0000596.1_g000010 Rmu_sc0000965.1_g000017 Rmu_sc0002862.1_g000003 Rmu_sc0002882.1_g000032 Rmu_sc0003902.1_g000018 Rmu_sc0006662.1_g000006 Rmu_sc0010963.1_g000006 Rmu_sc0012535.1_g000006
rosa_roxburghii	Rroxscaffold_2G00148670
rosa_rugosa	Rorug02G0030700
rosa_samantha	Rh1DG034900 Rh2AG076700 Rh2BG078000 Rh2CG080200 Rh2DG075300 Rh2DG566700 Rh3BG038800 Rh3CG266800 Rh3DG038000 Rh3DG262900 Rh6AG284700 Rh6BG048400 Rh6BG286100 Rh6CG287100 Rh7AG478700
rosa_wichuraiana	Rw2G006950 Rw3G003880 Rw3G021260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	458
AatII	GACGTC	1 cut(s)	363
AccI	GTMKAC	2 cut(s)	168, 195
AccII	CGCG	1 cut(s)	326
AciI	CCGC	3 cut(s)	173, 201, 261
AcsI	RAATTY	2 cut(s)	430, 577
AcyI	GRCGYC	1 cut(s)	360
AgsI	TTSAA	2 cut(s)	137, 677
AluBI	AGCT	4 cut(s)	67, 280, 299, 624
AluI	AGCT	4 cut(s)	67, 280, 299, 624
Alw26I	GTCTC	2 cut(s)	560, 659
Ama87I	CYCGRG	1 cut(s)	162
ApeKI	GCWGC	2 cut(s)	280, 328
ApoI	RAATTY	2 cut(s)	430, 577
AspLEI	GCGC	1 cut(s)	328
AspS9I	GGNCC	1 cut(s)	247
AsuHPI	GGTGA	3 cut(s)	247, 436, 616
AvaI	CYCGRG	1 cut(s)	162
AvaII	GGWCC	1 cut(s)	247
BbvI	GCAGC	2 cut(s)	267, 315
BccI	CCATC	3 cut(s)	16, 82, 194
BcoDI	GTCTC	2 cut(s)	560, 659
BisI	GCNGC	2 cut(s)	281, 329
BlpI	GCTNAGC	2 cut(s)	68, 295
BlsI	GCNGC	2 cut(s)	282, 330
Bme18I	GGWCC	1 cut(s)	247
BmeT110I	CYCGRG	1 cut(s)	162
BmgT120I	GGNCC	1 cut(s)	247
BmiI	GGNNCC	4 cut(s)	6, 218, 224, 498
BpmI	CTGGAG	1 cut(s)	654
Bpu1102I	GCTNAGC	2 cut(s)	68, 295
BsaHI	GRCGYC	1 cut(s)	360
BsaWI	WCCGGW	1 cut(s)	337
BsaXI	ACNNNNNCTCC	2 cut(s)	377, 407
Bse1I	ACTGG	1 cut(s)	637
BseGI	GGATG	1 cut(s)	622
BseMII	CTCAG	1 cut(s)	309
BseNI	ACTGG	1 cut(s)	637
BseRI	GAGGAG	2 cut(s)	277, 614
BseXI	GCAGC	2 cut(s)	267, 315
Bsh1236I	CGCG	1 cut(s)	326
BsiHKCI	CYCGRG	1 cut(s)	162
BsiSI	CCGG	2 cut(s)	220, 338
BsmAI	GTCTC	2 cut(s)	560, 659
BsoBI	CYCGRG	1 cut(s)	162
Bsp1720I	GCTNAGC	2 cut(s)	68, 295
BspACI	CCGC	3 cut(s)	173, 201, 261
BspCNI	CTCAG	1 cut(s)	308
BspFNI	CGCG	1 cut(s)	326
BspLI	GGNNCC	4 cut(s)	6, 218, 224, 498
BsrI	ACTGG	1 cut(s)	637
BssNI	GRCGYC	1 cut(s)	360
Bst4CI	ACNGT	3 cut(s)	88, 571, 670
BstACI	GRCGYC	1 cut(s)	360
BstC8I	GCNNGC	1 cut(s)	333
BstDEI	CTNAG	2 cut(s)	68, 295
BstF5I	GGATG	1 cut(s)	622
BstFNI	CGCG	1 cut(s)	326
BstHHI	GCGC	1 cut(s)	328
BstMAI	GTCTC	2 cut(s)	560, 659
BstMWI	GCNNNNNNNGC	3 cut(s)	318, 332, 679
BstUI	CGCG	1 cut(s)	326
BstV1I	GCAGC	2 cut(s)	267, 315
BtsCI	GGATG	1 cut(s)	622
Cac8I	GCNNGC	1 cut(s)	333
CfoI	GCGC	1 cut(s)	328
Cfr13I	GGNCC	1 cut(s)	247
CseI	GACGC	1 cut(s)	310
CviJI	RGCY	6 cut(s)	67, 72, 219, 280, 299, 624
CviKI_1	RGCY	6 cut(s)	67, 72, 219, 280, 299, 624
DdeI	CTNAG	2 cut(s)	68, 295
Eco47I	GGWCC	1 cut(s)	247
Eco88I	CYCGRG	1 cut(s)	162
FaiI	YATR	1 cut(s)	458
FauI	CCCGC	1 cut(s)	180
FblI	GTMKAC	2 cut(s)	168, 195
Fnu4HI	GCNGC	2 cut(s)	281, 329
FokI	GGATG	1 cut(s)	629
Fsp4HI	GCNGC	2 cut(s)	281, 329
GlaI	GCGC	1 cut(s)	327
GluI	GCNGC	2 cut(s)	281, 329
GsuI	CTGGAG	1 cut(s)	654
HapII	CCGG	2 cut(s)	220, 338
HgaI	GACGC	1 cut(s)	310
HhaI	GCGC	1 cut(s)	328
Hin1I	GRCGYC	1 cut(s)	360
Hin6I	GCGC	1 cut(s)	326
HinP1I	GCGC	1 cut(s)	326
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HinfI	GANTC	7 cut(s)	133, 182, 252, 386, 445, 482, 509
HpaII	CCGG	2 cut(s)	220, 338
HphI	GGTGA	3 cut(s)	247, 436, 616
Hpy166II	GTNNAC	3 cut(s)	24, 169, 196
Hpy188I	TCNGA	2 cut(s)	52, 84
Hpy188III	TCNNGA	3 cut(s)	25, 179, 491
Hpy8I	GTNNAC	3 cut(s)	24, 169, 196
Hpy99I	CGWCG	3 cut(s)	326, 362, 365
HpyAV	CCTTC	1 cut(s)	412
HpyCH4III	ACNGT	3 cut(s)	88, 571, 670
HpyCH4IV	ACGT	1 cut(s)	360
HpyCH4V	TGCA	4 cut(s)	157, 477, 647, 682
HpyF10VI	GCNNNNNNNGC	3 cut(s)	318, 332, 679
HpyF3I	CTNAG	2 cut(s)	68, 295
HpySE526I	ACGT	1 cut(s)	360
Hsp92I	GRCGYC	1 cut(s)	360
HspAI	GCGC	1 cut(s)	326
LmnI	GCTCC	3 cut(s)	216, 304, 340
LpnPI	CCDG	9 cut(s)	175, 233, 316, 351, 375, 434, 463, 476, 618
Lsp1109I	GCAGC	2 cut(s)	267, 315
MaeII	ACGT	1 cut(s)	360
MaeIII	GTNAC	1 cut(s)	582
MboII	GAAGA	2 cut(s)	418, 439
MluCI	AATT	6 cut(s)	60, 78, 140, 430, 577, 677
MlyI	GAGTC	1 cut(s)	395
MseI	TTAA	4 cut(s)	63, 378, 395, 554
MspA1I	CMGCKG	1 cut(s)	280
MspI	CCGG	2 cut(s)	220, 338
MvnI	CGCG	1 cut(s)	326
MwoI	GCNNNNNNNGC	3 cut(s)	318, 332, 679
NlaIV	GGNNCC	4 cut(s)	6, 218, 224, 498
PfeI	GAWTC	6 cut(s)	133, 182, 252, 445, 482, 509
PkrI	GCNGC	2 cut(s)	282, 330
PleI	GAGTC	1 cut(s)	394
PpsI	GAGTC	1 cut(s)	394
PsiI	TTATAA	1 cut(s)	458
PspN4I	GGNNCC	4 cut(s)	6, 218, 224, 498
PspPI	GGNCC	1 cut(s)	247
PvuII	CAGCTG	1 cut(s)	280
SalI	GTCGAC	1 cut(s)	167
SaqAI	TTAA	4 cut(s)	63, 378, 395, 554
SatI	GCNGC	2 cut(s)	281, 329
Sau96I	GGNCC	1 cut(s)	247
SchI	GAGTC	1 cut(s)	395
SinI	GGWCC	1 cut(s)	247
Sse9I	AATT	6 cut(s)	60, 78, 140, 430, 577, 677
SsiI	CCGC	3 cut(s)	173, 201, 261
TaaI	ACNGT	3 cut(s)	88, 571, 670
TaiI	ACGT	1 cut(s)	363
TaqI	TCGA	4 cut(s)	18, 168, 180, 512
TaqII	GACCGA	1 cut(s)	264
TasI	AATT	6 cut(s)	60, 78, 140, 430, 577, 677
TfiI	GAWTC	6 cut(s)	133, 182, 252, 445, 482, 509
Tru1I	TTAA	4 cut(s)	63, 378, 395, 554
Tru9I	TTAA	4 cut(s)	63, 378, 395, 554
TseI	GCWGC	2 cut(s)	280, 328
TspDTI	ATGAA	2 cut(s)	111, 431
VpaK11BI	GGWCC	1 cut(s)	247
XapI	RAATTY	2 cut(s)	430, 577
XmiI	GTMKAC	2 cut(s)	168, 195
ZraI	GACGTC	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.