Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001142

Physical Location & Seq

Genomic Coordinates Forward (+)

7926945 .. 7929387

Gene Structure 2443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G23510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGCAACCAGGTACGAGTGTATACGAATCTCCTGCTCTGAACCAAGCAGACGAAACTCCACCTATCAGCAAGACGGTCGTCAACGATACCAAAAATATCTTCTATTTTGATGATGGGGATGATGCCCCCTTACCAGCTTTAGAGAACCTCCAAATTTCAGGAGAACCTTATCCTGGACATGAACTTCAGGCTTGTGGTTACTCCATTAATGGAACAACAAGTTGTAATTTTGAGTGGGTATGTCATCTAGAAGATGGATCTGTGAATTACATTGATGGAGCAAAGAAGCCAAATTACCTTGTCACTGCTGATGATGTTGGTTTATGTCTTGCTATTGAAGTTCAGCCTTTGGATGACCGGAACCGGAAGGGAGAGCTTGTGAAGGTTTTTGCCAATGATAATCGCAAGATCGCTTGCCATCCAGAGATGCAGAGCAATATAGACAAGACTCTTCATACTGGTCATGCTTCATACAAAGTTTCTCTTGCGATTGGTTTCGTGCATATATGGGAAGCAGCTACGTTATCTATTGAGAGAGAAGGTTACACCATCAAGTGTAATAACGATCTCACAATTACAGAAAAGTTCTCAGCTTCTACTGCTGTAAAAATTCCGTTTGAGAAACCTGCAGAACTTGTTATCATTGGTTCTGATGGTAGTGAACATTGCTTACGAGTAGATAATGAATGGCCAGACATCAGCTCAAGAGATGAAATAGTACTCACCCTGAGATCATTTATCAAGACGGTAGTGTTCTTCAAAGCATTACAATTCATTTTATCACTCTCGTTACAATCTCTAGAAGACCAGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

271

Amino Acids

30.06

Weight (kDa)

4.68

Isoelectric Point (pI)

40.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IG_AIR9	PF23197	47 - 129	1.1e-08	AIR9 A9 domain
DUF7046	PF23080	138 - 164	2.9e-07	Domain of unknown function (DUF7046)
DUF7046	PF23080	164 - 249	4.2e-28	Domain of unknown function (DUF7046)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001142)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08440 AT5G08440 AT5G08440 AT5G23490 AT5G23490 AT5G23490 AT5G23490 AT5G23510 AT5G23510 AT5G23510
fragaria_vesca	FvH4_1g25960 FvH4_1g25960 FvH4_1g25960 FvH4_1g25960 FvH4_1g25960 FvH4_1g25960 FvH4_3g21410 FvH4_7g23540
malus_domestica	MD03G1185400.v1.1 MD04G1186900.v1.1 MD11G1230900.v1.1
prunus_persica	Prupe.4G196300_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1
pyrus_communis	pycom03g16520 pycom03g16530
rosa_chinensis	RchiOBHm_Chr1g0368691 RchiOBHm_Chr3g0485101 RchiOBHm_Chr5g0036791
rosa_laevigata	RLG00000023166 RLG00000027197 RLG00000033721
rosa_multiflora	Rmu_co8159396.1_g000001 Rmu_sc0000399.1_g000002 Rmu_sc0006040.1_g000006 Rmu_sc0006040.1_g000007
rosa_roxburghii	Rroxscaffold_1G00044160 Rroxscaffold_4G00288350 Rroxscaffold_6G00397190
rosa_rugosa	Rorug01G0343700 Rorug03G0216200 Rorug03G0216300
rosa_samantha	Rh3AG266300 Rh3BG301700 Rh3CG300000 Rh3DG295800 Rh5AG250300 Rh5BG252000 Rh5CG284000 Rh5DG260300
rosa_wichuraiana	Rw5G023020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	634
AccI	GTMKAC	1 cut(s)	21
AclWI	GGATC	1 cut(s)	265
AcoI	YGGCCR	1 cut(s)	689
AcsI	RAATTY	2 cut(s)	153, 609
AcuI	CTGAAG	1 cut(s)	170
AfaI	GTAC	2 cut(s)	13, 720
AfiI	CCNNNNNNNGG	1 cut(s)	173
AgsI	TTSAA	2 cut(s)	338, 760
AjnI	CCWGG	2 cut(s)	7, 172
AjuI	GAANNNNNNNTTGG	2 cut(s)	83, 115
AluBI	AGCT	5 cut(s)	137, 376, 518, 593, 702
AluI	AGCT	5 cut(s)	137, 376, 518, 593, 702
AlwI	GGATC	1 cut(s)	265
AoxI	GGCC	1 cut(s)	689
ApeKI	GCWGC	1 cut(s)	515
ApoI	RAATTY	2 cut(s)	153, 609
AseI	ATTAAT	1 cut(s)	207
AsuHPI	GGTGA	1 cut(s)	715
BaeI	ACNNNNGTAYC	1 cut(s)	36
BalI	TGGCCA	1 cut(s)	691
BarI	GAAGNNNNNNTAC	2 cut(s)	278, 310
BbsI	GAAGAC	1 cut(s)	810
BbvI	GCAGC	1 cut(s)	527
BccI	CCATC	6 cut(s)	107, 248, 269, 426, 557, 647
BcgI	CGANNNNNNTGC	4 cut(s)	14, 48, 58, 92
BciT130I	CCWGG	2 cut(s)	9, 174
BfaI	CTAG	2 cut(s)	248, 800
BfmI	CTRYAG	1 cut(s)	627
BfuAI	ACCTGC	1 cut(s)	634
BisI	GCNGC	1 cut(s)	516
BlsI	GCNGC	1 cut(s)	517
BmcAI	AGTACT	1 cut(s)	720
Bme1390I	CCNGG	2 cut(s)	9, 174
BmiI	GGNNCC	1 cut(s)	362
BmrFI	CCNGG	2 cut(s)	9, 174
BmsI	GCATC	2 cut(s)	112, 417
BoxI	GACNNNNGTC	1 cut(s)	77
BpiI	GAAGAC	1 cut(s)	810
BpuEI	CTTGAG	1 cut(s)	688
BsaWI	WCCGGW	2 cut(s)	357, 363
BsaXI	ACNNNNNCTCC	2 cut(s)	363, 393
Bsc4I	CCNNNNNNNGG	1 cut(s)	173
Bse1I	ACTGG	2 cut(s)	463, 808
Bse3DI	GCAATG	1 cut(s)	664
BseBI	CCWGG	2 cut(s)	9, 174
BseGI	GGATG	3 cut(s)	124, 358, 418
BseLI	CCNNNNNNNGG	1 cut(s)	173
BseMI	GCAATG	1 cut(s)	664
BseMII	CTCAG	2 cut(s)	603, 719
BseNI	ACTGG	2 cut(s)	463, 808
BseXI	GCAGC	1 cut(s)	527
Bsh1285I	CGRYCG	1 cut(s)	78
BshFI	GGCC	1 cut(s)	691
BsiEI	CGRYCG	1 cut(s)	78
BsiSI	CCGG	2 cut(s)	358, 364
BslI	CCNNNNNNNGG	1 cut(s)	173
BsnI	GGCC	1 cut(s)	691
Bsp143I	GATC	4 cut(s)	257, 408, 565, 731
BspANI	GGCC	1 cut(s)	691
BspCNI	CTCAG	2 cut(s)	602, 720
BspLI	GGNNCC	1 cut(s)	362
BspMAI	CTGCAG	1 cut(s)	631
BspMI	ACCTGC	1 cut(s)	634
BspPI	GGATC	1 cut(s)	265
BsrDI	GCAATG	1 cut(s)	664
BsrI	ACTGG	2 cut(s)	463, 808
BssMI	GATC	4 cut(s)	257, 408, 565, 731
BssNAI	GTATAC	1 cut(s)	22
Bst1107I	GTATAC	1 cut(s)	22
Bst2UI	CCWGG	2 cut(s)	9, 174
Bst4CI	ACNGT	2 cut(s)	76, 748
Bst6I	CTCTTC	1 cut(s)	456
BstC8I	GCNNGC	1 cut(s)	415
BstDEI	CTNAG	2 cut(s)	589, 728
BstF5I	GGATG	3 cut(s)	124, 358, 418
BstKTI	GATC	4 cut(s)	260, 411, 568, 734
BstMBI	GATC	4 cut(s)	257, 408, 565, 731
BstMCI	CGRYCG	1 cut(s)	78
BstMWI	GCNNNNNNNGC	1 cut(s)	599
BstNI	CCWGG	2 cut(s)	9, 174
BstPAI	GACNNNNGTC	1 cut(s)	77
BstSCI	CCNGG	2 cut(s)	7, 172
BstSFI	CTRYAG	1 cut(s)	627
BstV1I	GCAGC	1 cut(s)	527
BstV2I	GAAGAC	1 cut(s)	810
BstX2I	RGATCY	1 cut(s)	257
BstYI	RGATCY	1 cut(s)	257
BstZ17I	GTATAC	1 cut(s)	22
BsuRI	GGCC	1 cut(s)	691
BtsCI	GGATG	3 cut(s)	124, 358, 418
BtsI	GCAGTG	1 cut(s)	303
BtsIMutI	CAGTG	1 cut(s)	303
BveI	ACCTGC	1 cut(s)	634
Cac8I	GCNNGC	1 cut(s)	415
CsiI	ACCWGGT	1 cut(s)	7
Csp6I	GTAC	2 cut(s)	12, 719
CviAII	CATG	2 cut(s)	179, 464
CviJI	RGCY	9 cut(s)	137, 191, 289, 346, 376, 518, 593, 691, 702
CviKI_1	RGCY	9 cut(s)	137, 191, 289, 346, 376, 518, 593, 691, 702
CviQI	GTAC	2 cut(s)	12, 719
DdeI	CTNAG	2 cut(s)	589, 728
DpnI	GATC	4 cut(s)	259, 410, 567, 733
DpnII	GATC	4 cut(s)	257, 408, 565, 731
EaeI	YGGCCR	1 cut(s)	689
Eam1104I	CTCTTC	1 cut(s)	456
EarI	CTCTTC	1 cut(s)	456
Eco57I	CTGAAG	1 cut(s)	170
EcoRII	CCWGG	2 cut(s)	7, 172
FaeI	CATG	2 cut(s)	182, 467
FalI	AAGNNNNNCTT	2 cut(s)	468, 500
FatI	CATG	2 cut(s)	178, 463
FblI	GTMKAC	1 cut(s)	21
Fnu4HI	GCNGC	1 cut(s)	516
FokI	GGATG	3 cut(s)	131, 365, 405
Fsp4HI	GCNGC	1 cut(s)	516
FspBI	CTAG	2 cut(s)	248, 800
GluI	GCNGC	1 cut(s)	516
HaeIII	GGCC	1 cut(s)	691
HapII	CCGG	2 cut(s)	358, 364
Hin1II	CATG	2 cut(s)	182, 467
HincII	GTYRAC	1 cut(s)	82
HindII	GTYRAC	1 cut(s)	82
HinfI	GANTC	2 cut(s)	26, 448
HpaII	CCGG	2 cut(s)	358, 364
HphI	GGTGA	1 cut(s)	715
Hpy166II	GTNNAC	3 cut(s)	22, 82, 662
Hpy188I	TCNGA	2 cut(s)	39, 652
Hpy188III	TCNNGA	6 cut(s)	159, 248, 422, 705, 742, 800
Hpy8I	GTNNAC	3 cut(s)	22, 82, 662
HpyAV	CCTTC	3 cut(s)	361, 376, 533
HpyCH4III	ACNGT	2 cut(s)	76, 748
HpyCH4IV	ACGT	1 cut(s)	521
HpyCH4V	TGCA	4 cut(s)	4, 430, 502, 629
HpyF10VI	GCNNNNNNNGC	1 cut(s)	599
HpyF3I	CTNAG	2 cut(s)	589, 728
HpySE526I	ACGT	1 cut(s)	521
Hsp92II	CATG	2 cut(s)	182, 467
Kzo9I	GATC	4 cut(s)	257, 408, 565, 731
LmnI	GCTCC	1 cut(s)	278
Lsp1109I	GCAGC	1 cut(s)	527
LweI	GCATC	2 cut(s)	112, 417
MabI	ACCWGGT	1 cut(s)	7
MaeI	CTAG	2 cut(s)	248, 800
MaeII	ACGT	1 cut(s)	521
MaeIII	GTNAC	4 cut(s)	197, 301, 542, 789
MalI	GATC	4 cut(s)	259, 410, 567, 733
MboI	GATC	4 cut(s)	257, 408, 565, 731
MboII	GAAGA	5 cut(s)	91, 263, 443, 748, 815
MflI	RGATCY	1 cut(s)	257
MlsI	TGGCCA	1 cut(s)	691
MluCI	AATT	7 cut(s)	153, 226, 265, 292, 573, 609, 770
MluNI	TGGCCA	1 cut(s)	691
MlyI	GAGTC	1 cut(s)	442
MnlI	CCTC	1 cut(s)	158
Mox20I	TGGCCA	1 cut(s)	691
MscI	TGGCCA	1 cut(s)	691
MseI	TTAA	2 cut(s)	207, 814
Msp20I	TGGCCA	1 cut(s)	691
MspI	CCGG	2 cut(s)	358, 364
MspR9I	CCNGG	2 cut(s)	9, 174
MvaI	CCWGG	2 cut(s)	9, 174
MwoI	GCNNNNNNNGC	1 cut(s)	599
NdeII	GATC	4 cut(s)	257, 408, 565, 731
NlaIII	CATG	2 cut(s)	182, 467
NlaIV	GGNNCC	1 cut(s)	362
NmuCI	GTSAC	1 cut(s)	301
PfeI	GAWTC	1 cut(s)	26
PfoI	TCCNGGA	1 cut(s)	172
PkrI	GCNGC	1 cut(s)	517
PleI	GAGTC	1 cut(s)	442
PpsI	GAGTC	1 cut(s)	442
PshAI	GACNNNNGTC	1 cut(s)	77
PshBI	ATTAAT	1 cut(s)	207
Psp6I	CCWGG	2 cut(s)	7, 172
PspGI	CCWGG	2 cut(s)	7, 172
PspN4I	GGNNCC	1 cut(s)	362
PsrI	GAACNNNNNNTAC	2 cut(s)	654, 686
PstI	CTGCAG	1 cut(s)	631
PsuI	RGATCY	1 cut(s)	257
RsaI	GTAC	2 cut(s)	13, 720
RsaNI	GTAC	2 cut(s)	12, 719
SaqAI	TTAA	2 cut(s)	207, 814
SatI	GCNGC	1 cut(s)	516
Sau3AI	GATC	4 cut(s)	257, 408, 565, 731
ScaI	AGTACT	1 cut(s)	720
SchI	GAGTC	1 cut(s)	442
ScrFI	CCNGG	2 cut(s)	9, 174
SexAI	ACCWGGT	1 cut(s)	7
SfaNI	GCATC	2 cut(s)	112, 417
SfcI	CTRYAG	1 cut(s)	627
SmlI	CTYRAG	1 cut(s)	703
SmoI	CTYRAG	1 cut(s)	703
Sse9I	AATT	7 cut(s)	153, 226, 265, 292, 573, 609, 770
SspMI	CTAG	2 cut(s)	248, 800
StyD4I	CCNGG	2 cut(s)	7, 172
TaaI	ACNGT	2 cut(s)	76, 748
TaiI	ACGT	1 cut(s)	524
TasI	AATT	7 cut(s)	153, 226, 265, 292, 573, 609, 770
TatI	WGTACW	1 cut(s)	718
TfiI	GAWTC	1 cut(s)	26
Tru1I	TTAA	2 cut(s)	207, 814
Tru9I	TTAA	2 cut(s)	207, 814
TscAI	CASTG	1 cut(s)	310
TseFI	GTSAC	1 cut(s)	301
TseI	GCWGC	1 cut(s)	515
Tsp45I	GTSAC	1 cut(s)	301
TspDTI	ATGAA	6 cut(s)	195, 443, 459, 699, 726, 763
TspGWI	ACGGA	1 cut(s)	603
TspRI	CASTG	1 cut(s)	310
VspI	ATTAAT	1 cut(s)	207
XapI	RAATTY	2 cut(s)	153, 609
XbaI	TCTAGA	2 cut(s)	247, 799
XmiI	GTMKAC	1 cut(s)	21
XspI	CTAG	2 cut(s)	248, 800
ZrmI	AGTACT	1 cut(s)	720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.