Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0001142

Physical Location & Seq

Genomic Coordinates Forward (+)

33591393 .. 33593756

Gene Structure 2364 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1230900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2364 bp

ATGGAGAACGGTCACGATTGGAAAATCGTGGAGAAATTCTCAGGGTTGACGGTTTCCACCGCCGACCCAATTGCTTCTTCTACCCCCACCACCGCCACCACCACCGCAGACAATCAAGACAGCAGCTTGCTTCAAGTTATGTACGCCATGGAAGCTGCGGAGGCCACAATCAAGCAGCAGGTGGAAGACAACATTCGGTTGCGGGCTCAGCTCGAACACAAGATTCTCGAGCTGCACAGGTACAAGCTCCACGAATCCATGGCCGCCCAGTTGCCGCCTTCCGCCCGCGAATCTCTGGACCAAGCTCATCAGGTAGCTGCCCCCGGCGTCGACAATCGAATCGAGAGGATTGCGAATCACGGTTCGTCACAGCAGAGTCGTGGGGAATCGGAAACAAGGGAGACCCAGTTGAGCGGCAGCGAAATCAATGAAGGAATGAAGGTGGTTCGGGTTTCGGGTACTCCGACGGCGGCTGATAACGCAAGCAACGTGATATCGAGATTGTCATCGCCGTCTACGATGACGTCTCTTTCACCAGGCAGGTCGAGCACGGGGGGTGATTACGGAAATGGGTTGATGCCATTGACCGAGTCGAATAACCCTAATAGCAGCATGTTGAAGAAGGATCTGGTTGTTAGGATTCATGAGCACGATCAGGAAATTATGCAATTGCGGAAGCATTTGGCGGATTATTCGATCAAAGAGGCGCAAATTCGGAACGAAAAGTATGTGCTGGAGAAGCGCATTGCTTACATGCGTTTGGCATTTGATCAGCAGCAGCAGGACCTTGTGGATGCTGCATCAAAGTCTCTGTCCTACAGGCAAGACATAATTGAGGAGAACATTCGGCTCGCTTACGCCGTGCAGGATGCGCAGCAGGAGAGATCGACTTTTGTTTCGTCTTTGCTGCCGATTCTGGCTGAGTACTCGTTGCAGCCACCTGTCCCCGATGCACAATCGATTGTTGAGAGTGTGAAGGTTTTGTTTAGGTATATGAAGGAGAAGTTGCTTCTTACTGAGTCCAAATTGAAAGAGTTGCAGTATCAGTTAACGCCTTGGCGATCAGATACAAATCAGCAGCCGAGTAAAGTTAATGTTTCTGCGCCGCAGTTATCACCACCGCCGCCACCACCACCACAGTCCGTTGCTGGAGCAGCATTGCTGAATGTAAGCAGAAATGGGCTTGAAATAGTTGCTCAGAATCAGCAAGCATATTCTTACATTGGTGGAAGCAAGGCGCTTGCTACCTCCGATGCGCAGACAACTGCGGAATGGAATCCTCATCAGCAGAGTGGTTTTGGTGGCGGTGTCGCCAACAATGTGGAACACAATGACCTGGTCATGGGGAATGCATATCACCCTGTTCCAAACCGGACTTTTGTAGCCCAATATGTGCCTCCAACTCATGCTGTTACTCAAGTAAATCGGTTTAATGAAGTAACGAGTAATAGACAGGTGACATTTCGTGATCCTGTCAGGAACACACAGAGAGAGATGGATGATCAAGATGCAGAGGGAAACCACAATGAGAGAGACTCGTCCAATTGGAGTGCAGGAACGTCTCCTTACGCATCACCGCTCAATGAATCCAGCTCCCCATATCCCCGTTACTTAACGCCAGTTATTGAAGAGGGCTCTTCTTCATACTCAGAAGCTGCAGATGATGATCCATTACCAGCTATCGAGGGCCTCCAAATCTCGGGTGAAGCTTTTCCAGGACACAAGCTTCAGGCATCTGGATACTCCACCAACGGAACAACCAGTTGCAACTTTGAGTGGGTAAGACATCTCCAAGACGGATCAGTTAACTACATTGACGGAGCAAAGGAACCGAACTACCTTGTAACTGCTGATGATGTCGATGCATACCTTGCGATCGAAGTCCAGCCTCTGGACAACAGGAAGCGAAAGGGGGCGCCCGTAAAGGTGTTTGCCAACGAGAACAAGAAGATCACTTGCGACCCCGAAATGCAATCACAGATAGAGAAGATTCTTCACAAGGGCCAAGCCTCGTTCAAAATACTTCAGTTCACCGAATACCACGACGTATGGGAACCTGCAACACTGGCCATAAAGCGGGGAGCTTACAGCATAAAGTGTAGTGGAGGGCCGAGTGGAAGCGGAGCTGTAGTTGCAGAGAAGTTTTCTTCAAACACAATTGTCAGAATCCCATATGGAAGTCCAACAGAATTCATAATACTCAGCAGCTCCGAAAACGGAGGTGAGTATATGTTGAAAACGGACAGTGAGAGCTGTTCTAGAGATACAGCAGTGCTCACATTGAGATTGTTTGTTCATAGGGCAGATAAGAGGACTAGAAAGAAAGGGAAAATAGGGACTTACTTTTTCAACAAGTATTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

788

Amino Acids

86.92

Weight (kDa)

5.71

Isoelectric Point (pI)

51.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IG_AIR9	PF23197	562 - 643	7.1e-08	AIR9 A9 domain
DUF7046	PF23080	674 - 775	4.3e-28	Domain of unknown function (DUF7046)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001142)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08440 AT5G08440 AT5G08440 AT5G23490 AT5G23490 AT5G23490 AT5G23490 AT5G23510 AT5G23510 AT5G23510
fragaria_vesca	FvH4_1g25960 FvH4_1g25960 FvH4_1g25960 FvH4_1g25960 FvH4_1g25960 FvH4_1g25960 FvH4_3g21410 FvH4_7g23540
malus_domestica	MD03G1185400.v1.1 MD04G1186900.v1.1 MD11G1230900.v1.1
prunus_persica	Prupe.4G196300_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1
pyrus_communis	pycom03g16520 pycom03g16530
rosa_chinensis	RchiOBHm_Chr1g0368691 RchiOBHm_Chr3g0485101 RchiOBHm_Chr5g0036791
rosa_laevigata	RLG00000023166 RLG00000027197 RLG00000033721
rosa_multiflora	Rmu_co8159396.1_g000001 Rmu_sc0000399.1_g000002 Rmu_sc0006040.1_g000006 Rmu_sc0006040.1_g000007
rosa_roxburghii	Rroxscaffold_1G00044160 Rroxscaffold_4G00288350 Rroxscaffold_6G00397190
rosa_rugosa	Rorug01G0343700 Rorug03G0216200 Rorug03G0216300
rosa_samantha	Rh3AG266300 Rh3BG301700 Rh3CG300000 Rh3DG295800 Rh5AG250300 Rh5BG252000 Rh5CG284000 Rh5DG260300
rosa_wichuraiana	Rw5G023020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	169
AatII	GACGTC	1 cut(s)	527
Acc16I	TGCGCA	2 cut(s)	873, 1257
Acc36I	ACCTGC	3 cut(s)	169, 531, 2065
AccB1I	GGYRCC	1 cut(s)	1915
AccB7I	CCANNNNNTGG	1 cut(s)	1891
AccBSI	CCGCTC	2 cut(s)	414, 1579
AccI	GTMKAC	2 cut(s)	330, 515
AccII	CGCG	1 cut(s)	288
AclWI	GGATC	4 cut(s)	633, 1463, 1661, 1807
AcoI	YGGCCR	2 cut(s)	261, 2067
AcsI	RAATTY	3 cut(s)	35, 711, 2189
AcuI	CTGAAG	2 cut(s)	1712, 2009
AcyI	GRCGYC	3 cut(s)	327, 524, 1916
AfaI	GTAC	4 cut(s)	143, 242, 460, 926
AfiI	CCNNNNNNNGG	4 cut(s)	1342, 1699, 1891, 2076
AgsI	TTSAA	9 cut(s)	134, 619, 1030, 1187, 1628, 2017, 2151, 2236, 2350
AjnI	CCWGG	3 cut(s)	535, 1335, 1714
AjuI	GAANNNNNNNTTGG	2 cut(s)	61, 93
Alw21I	GWGCWC	3 cut(s)	551, 651, 2277
Alw26I	GTCTC	5 cut(s)	395, 531, 813, 1527, 1566
AlwI	GGATC	4 cut(s)	633, 1463, 1661, 1807
AlwNI	CAGNNNCTG	2 cut(s)	1655, 1891
Ama87I	CYCGRG	2 cut(s)	227, 1699
AoxI	GGCC	6 cut(s)	162, 261, 1687, 2002, 2067, 2108
ApoI	RAATTY	3 cut(s)	35, 711, 2189
ArsI	GACNNNNNNTTYG	4 cut(s)	797, 829, 880, 912
Asp700I	GAANNNNTTC	1 cut(s)	1710
AspLEI	GCGC	7 cut(s)	709, 744, 874, 1105, 1240, 1258, 1918
AspS9I	GGNCC	5 cut(s)	298, 784, 1687, 2002, 2108
AsuC2I	CCSGG	1 cut(s)	324
AsuHPI	GGTGA	9 cut(s)	525, 569, 1107, 1349, 1468, 1566, 1715, 2023, 2234
AvaI	CYCGRG	2 cut(s)	227, 1699
AvaII	GGWCC	2 cut(s)	298, 784
BaeI	ACNNNNGTAYC	2 cut(s)	2256, 2289
BalI	TGGCCA	1 cut(s)	2069
BanI	GGYRCC	1 cut(s)	1915
BanII	GRGCYC	2 cut(s)	208, 1637
BbsI	GAAGAC	1 cut(s)	192
Bbv12I	GWGCWC	3 cut(s)	551, 651, 2277
BccI	CCATC	1 cut(s)	1489
BceAI	ACGGC	3 cut(s)	483, 496, 845
BcgI	CGANNNNNNTGC	4 cut(s)	53, 87, 332, 366
BciT130I	CCWGG	3 cut(s)	537, 1337, 1716
BciVI	GTATCC	1 cut(s)	1733
BclI	TGATCA	2 cut(s)	769, 1501
BcnI	CCSGG	1 cut(s)	324
BcoDI	GTCTC	5 cut(s)	395, 531, 813, 1527, 1566
BfaI	CTAG	2 cut(s)	2259, 2316
BfmI	CTRYAG	3 cut(s)	817, 1656, 2127
BfoI	RGCGCY	2 cut(s)	1241, 1919
BfuAI	ACCTGC	3 cut(s)	169, 531, 2065
BfuI	GTATCC	1 cut(s)	1733
BlpI	GCTNAGC	1 cut(s)	207
BmcAI	AGTACT	1 cut(s)	926
Bme1390I	CCNGG	4 cut(s)	324, 537, 1337, 1716
Bme18I	GGWCC	2 cut(s)	298, 784
BmeT110I	CYCGRG	2 cut(s)	227, 1699
BmgT120I	GGNCC	5 cut(s)	298, 784, 1687, 2002, 2108
BmiI	GGNNCC	3 cut(s)	1830, 1917, 2055
BmrFI	CCNGG	4 cut(s)	324, 537, 1337, 1716
BmrI	ACTGGG	2 cut(s)	262, 400
BmuI	ACTGGG	2 cut(s)	262, 400
BpiI	GAAGAC	1 cut(s)	192
BplI	GAGNNNNNCTC	4 cut(s)	23, 55, 1520, 1552
BpmI	CTGGAG	2 cut(s)	755, 1170
Bpu1102I	GCTNAGC	1 cut(s)	207
BpuEI	CTTGAG	1 cut(s)	1401
BpuMI	CCSGG	1 cut(s)	324
Bsa29I	ATCGAT	1 cut(s)	959
BsaBI	GATNNNNATC	3 cut(s)	505, 1071, 1665
BsaHI	GRCGYC	3 cut(s)	327, 524, 1916
BsaI	GGTCTC	1 cut(s)	395
BsaJI	CCNNGG	4 cut(s)	147, 258, 322, 1055
BsaWI	WCCGGW	1 cut(s)	1371
BsaXI	ACNNNNNCTCC	4 cut(s)	392, 422, 2115, 2145
Bsc4I	CCNNNNNNNGG	4 cut(s)	1342, 1699, 1891, 2076
Bse1I	ACTGG	5 cut(s)	268, 406, 1619, 1761, 2070
Bse3DI	GCAATG	2 cut(s)	744, 1157
Bse8I	GATNNNNATC	3 cut(s)	505, 1071, 1665
BseBI	CCWGG	3 cut(s)	537, 1337, 1716
BseCI	ATCGAT	1 cut(s)	959
BseDI	CCNNGG	4 cut(s)	147, 258, 322, 1055
BseGI	GGATG	3 cut(s)	799, 874, 1504
BseJI	GATNNNNATC	3 cut(s)	505, 1071, 1665
BseLI	CCNNNNNNNGG	4 cut(s)	1342, 1699, 1891, 2076
BseMI	GCAATG	2 cut(s)	744, 1157
BseMII	CTCAG	7 cut(s)	54, 221, 912, 1008, 1211, 1662, 2215
BseNI	ACTGG	5 cut(s)	268, 406, 1619, 1761, 2070
BseRI	GAGGAG	1 cut(s)	851
BsgI	GTGCAG	3 cut(s)	218, 884, 1572
Bsh1236I	CGCG	1 cut(s)	288
Bsh1285I	CGRYCG	1 cut(s)	1878
BshFI	GGCC	6 cut(s)	164, 263, 1689, 2004, 2069, 2110
BshNI	GGYRCC	1 cut(s)	1915
BshVI	ATCGAT	1 cut(s)	959
BsiEI	CGRYCG	1 cut(s)	1878
BsiHKAI	GWGCWC	3 cut(s)	551, 651, 2277
BsiHKCI	CYCGRG	2 cut(s)	227, 1699
BsiSI	CCGG	2 cut(s)	324, 1372
BslFI	GGGAC	2 cut(s)	929, 2350
BslI	CCNNNNNNNGG	4 cut(s)	1342, 1699, 1891, 2076
BsmAI	GTCTC	5 cut(s)	395, 531, 813, 1527, 1566
BsmBI	CGTCTC	2 cut(s)	531, 1566
BsmFI	GGGAC	2 cut(s)	929, 2350
BsmI	GAATGC	1 cut(s)	1354
BsnI	GGCC	6 cut(s)	164, 263, 1689, 2004, 2069, 2110
Bso31I	GGTCTC	1 cut(s)	395
BsoBI	CYCGRG	2 cut(s)	227, 1699
Bsp1286I	GDGCHC	5 cut(s)	208, 551, 651, 1637, 2277
Bsp1720I	GCTNAGC	1 cut(s)	207
Bsp19I	CCATGG	2 cut(s)	147, 258
BspANI	GGCC	6 cut(s)	164, 263, 1689, 2004, 2069, 2110
BspCNI	CTCAG	7 cut(s)	53, 220, 913, 1009, 1210, 1661, 2214
BspDI	ATCGAT	1 cut(s)	959
BspFNI	CGCG	1 cut(s)	288
BspHI	TCATGA	1 cut(s)	643
BspLI	GGNNCC	3 cut(s)	1830, 1917, 2055
BspMAI	CTGCAG	1 cut(s)	1660
BspMI	ACCTGC	3 cut(s)	169, 531, 2065
BspPI	GGATC	4 cut(s)	633, 1463, 1661, 1807
BspQI	GCTCTTC	1 cut(s)	1642
BspT107I	GGYRCC	1 cut(s)	1915
BspTNI	GGTCTC	1 cut(s)	395
BsrBI	CCGCTC	2 cut(s)	414, 1579
BsrDI	GCAATG	2 cut(s)	744, 1157
BsrI	ACTGG	5 cut(s)	268, 406, 1619, 1761, 2070
BssECI	CCNNGG	4 cut(s)	147, 258, 322, 1055
BssNI	GRCGYC	3 cut(s)	327, 524, 1916
BssT1I	CCWWGG	3 cut(s)	147, 258, 1055
Bst2UI	CCWGG	3 cut(s)	537, 1337, 1716
Bst4CI	ACNGT	5 cut(s)	11, 52, 362, 1140, 2246
Bst6I	CTCTTC	2 cut(s)	1623, 1642
BstACI	GRCGYC	3 cut(s)	327, 524, 1916
BstAPI	GCANNNNNTGC	1 cut(s)	1871
BstC8I	GCNNGC	7 cut(s)	128, 204, 286, 484, 852, 1209, 1242
BstDEI	CTNAG	7 cut(s)	40, 207, 921, 1017, 1197, 1648, 2201
BstDSI	CCRYGG	2 cut(s)	147, 258
BstF5I	GGATG	3 cut(s)	799, 874, 1504
BstFNI	CGCG	1 cut(s)	288
BstH2I	RGCGCY	2 cut(s)	1241, 1919
BstHHI	GCGC	7 cut(s)	709, 744, 874, 1105, 1240, 1258, 1918
BstMAI	GTCTC	5 cut(s)	395, 531, 813, 1527, 1566
BstMCI	CGRYCG	1 cut(s)	1878
BstNI	CCWGG	3 cut(s)	537, 1337, 1716
BstNSI	RCATGY	2 cut(s)	616, 757
BstSCI	CCNGG	4 cut(s)	322, 535, 1335, 1714
BstSFI	CTRYAG	3 cut(s)	817, 1656, 2127
BstUI	CGCG	1 cut(s)	288
BstV2I	GAAGAC	1 cut(s)	192
BstX2I	RGATCY	1 cut(s)	625
BstXI	CCANNNNNNTGG	1 cut(s)	1321
BstYI	RGATCY	1 cut(s)	625
Bsu15I	ATCGAT	1 cut(s)	959
BsuI	GTATCC	1 cut(s)	1733
BsuRI	GGCC	6 cut(s)	164, 263, 1689, 2004, 2069, 2110
BsuTUI	ATCGAT	1 cut(s)	959
BtgI	CCRYGG	2 cut(s)	147, 258
BtgZI	GCGATG	1 cut(s)	492
BtsCI	GGATG	3 cut(s)	799, 874, 1504
BtsI	GCAGTG	1 cut(s)	2277
BtsIMutI	CAGTG	3 cut(s)	2063, 2251, 2277
BveI	ACCTGC	3 cut(s)	169, 531, 2065
Cac8I	GCNNGC	7 cut(s)	128, 204, 286, 484, 852, 1209, 1242
CaiI	CAGNNNCTG	2 cut(s)	1655, 1891
CciI	TCATGA	1 cut(s)	643
CfoI	GCGC	7 cut(s)	709, 744, 874, 1105, 1240, 1258, 1918
Cfr13I	GGNCC	5 cut(s)	298, 784, 1687, 2002, 2108
ClaI	ATCGAT	1 cut(s)	959
CseI	GACGC	1 cut(s)	316
CsiI	ACCWGGT	1 cut(s)	1335
Csp6I	GTAC	4 cut(s)	142, 241, 459, 925
CviAII	CATG	7 cut(s)	148, 259, 613, 644, 754, 1342, 1406
CviQI	GTAC	4 cut(s)	142, 241, 459, 925
DdeI	CTNAG	7 cut(s)	40, 207, 921, 1017, 1197, 1648, 2201
DinI	GGCGCC	1 cut(s)	1917
EaeI	YGGCCR	2 cut(s)	261, 2067
Eam1104I	CTCTTC	2 cut(s)	1623, 1642
EarI	CTCTTC	2 cut(s)	1623, 1642
EciI	GGCGGA	2 cut(s)	271, 701
Eco130I	CCWWGG	3 cut(s)	147, 258, 1055
Eco24I	GRGCYC	2 cut(s)	208, 1637
Eco31I	GGTCTC	1 cut(s)	395
Eco32I	GATATC	1 cut(s)	495
Eco47I	GGWCC	2 cut(s)	298, 784
Eco57I	CTGAAG	2 cut(s)	1712, 2009
Eco88I	CYCGRG	2 cut(s)	227, 1699
EcoO109I	RGGNCCY	2 cut(s)	784, 1687
EcoRI	GAATTC	1 cut(s)	2189
EcoRII	CCWGG	3 cut(s)	535, 1335, 1714
EcoRV	GATATC	1 cut(s)	495
EcoT14I	CCWWGG	3 cut(s)	147, 258, 1055
EcoT22I	ATGCAT	2 cut(s)	1354, 1867
EcoT38I	GRGCYC	2 cut(s)	208, 1637
EgeI	GGCGCC	1 cut(s)	1917
EheI	GGCGCC	1 cut(s)	1917
ErhI	CCWWGG	3 cut(s)	147, 258, 1055
Esp3I	CGTCTC	2 cut(s)	531, 1566
FaeI	CATG	7 cut(s)	151, 262, 616, 647, 757, 1345, 1409
FaqI	GGGAC	2 cut(s)	929, 2350
FatI	CATG	7 cut(s)	147, 258, 612, 643, 753, 1341, 1405
FauI	CCCGC	3 cut(s)	195, 293, 2070
FauNDI	CATATG	1 cut(s)	2173
FbaI	TGATCA	2 cut(s)	769, 1501
FblI	GTMKAC	2 cut(s)	330, 515
FokI	GGATG	3 cut(s)	806, 881, 1511
FriOI	GRGCYC	2 cut(s)	208, 1637
FspBI	CTAG	2 cut(s)	2259, 2316
FspI	TGCGCA	2 cut(s)	873, 1257
GlaI	GCGC	7 cut(s)	708, 743, 873, 1104, 1239, 1257, 1917
GsuI	CTGGAG	2 cut(s)	755, 1170
HaeII	RGCGCY	2 cut(s)	1241, 1919
HaeIII	GGCC	6 cut(s)	164, 263, 1689, 2004, 2069, 2110
HapII	CCGG	2 cut(s)	324, 1372
HgaI	GACGC	1 cut(s)	316
HhaI	GCGC	7 cut(s)	709, 744, 874, 1105, 1240, 1258, 1918
Hin1I	GRCGYC	3 cut(s)	327, 524, 1916
Hin1II	CATG	7 cut(s)	151, 262, 616, 647, 757, 1345, 1409
Hin6I	GCGC	7 cut(s)	707, 742, 872, 1103, 1238, 1256, 1916
HinP1I	GCGC	7 cut(s)	707, 742, 872, 1103, 1238, 1256, 1916
HincII	GTYRAC	4 cut(s)	48, 331, 1050, 1807
HindII	GTYRAC	4 cut(s)	48, 331, 1050, 1807
HindIII	AAGCTT	2 cut(s)	1707, 1724
HpaI	GTTAAC	2 cut(s)	1050, 1807
HpaII	CCGG	2 cut(s)	324, 1372
HphI	GGTGA	9 cut(s)	525, 569, 1107, 1349, 1468, 1566, 1715, 2023, 2234
Hpy166II	GTNNAC	6 cut(s)	48, 331, 516, 1050, 1807, 2031
Hpy188I	TCNGA	9 cut(s)	391, 465, 717, 1066, 1200, 1252, 1651, 2165, 2212
Hpy8I	GTNNAC	6 cut(s)	48, 331, 516, 1050, 1807, 2031
Hpy99I	CGWCG	3 cut(s)	332, 469, 2048
HpyAV	CCTTC	6 cut(s)	288, 425, 433, 616, 970, 991
HpyCH4III	ACNGT	5 cut(s)	11, 52, 362, 1140, 2246
HpyCH4IV	ACGT	4 cut(s)	489, 524, 1559, 2046
HpyF3I	CTNAG	7 cut(s)	40, 207, 921, 1017, 1197, 1648, 2201
HpySE526I	ACGT	4 cut(s)	489, 524, 1559, 2046
Hsp92I	GRCGYC	3 cut(s)	327, 524, 1916
Hsp92II	CATG	7 cut(s)	151, 262, 616, 647, 757, 1345, 1409
HspAI	GCGC	7 cut(s)	707, 742, 872, 1103, 1238, 1256, 1916
KasI	GGCGCC	1 cut(s)	1915
Ksp22I	TGATCA	2 cut(s)	769, 1501
KspAI	GTTAAC	2 cut(s)	1050, 1807
LguI	GCTCTTC	1 cut(s)	1642
LmnI	GCTCC	7 cut(s)	252, 1151, 1598, 1820, 2081, 2123, 2213
MabI	ACCWGGT	1 cut(s)	1335
MaeI	CTAG	2 cut(s)	2259, 2316
MaeII	ACGT	4 cut(s)	489, 524, 1559, 2046
MaeIII	GTNAC	7 cut(s)	11, 366, 1411, 1438, 1456, 1607, 1843
MbiI	CCGCTC	2 cut(s)	414, 1579
MfeI	CAATTG	4 cut(s)	69, 668, 1543, 2157
MflI	RGATCY	1 cut(s)	625
MhlI	GDGCHC	5 cut(s)	208, 551, 651, 1637, 2277
MlsI	TGGCCA	1 cut(s)	2069
MluNI	TGGCCA	1 cut(s)	2069
Mly113I	GGCGCC	1 cut(s)	1916
MlyI	GAGTC	4 cut(s)	385, 599, 1028, 1529
MmeI	TCCRAC	3 cut(s)	488, 1424, 2207
Mox20I	TGGCCA	1 cut(s)	2069
Mph1103I	ATGCAT	2 cut(s)	1354, 1867
MroXI	GAANNNNTTC	1 cut(s)	1710
MscI	TGGCCA	1 cut(s)	2069
MseI	TTAA	5 cut(s)	1049, 1092, 1431, 1613, 1806
Msp20I	TGGCCA	1 cut(s)	2069
MspI	CCGG	2 cut(s)	324, 1372
MspR9I	CCNGG	4 cut(s)	324, 537, 1337, 1716
MunI	CAATTG	4 cut(s)	69, 668, 1543, 2157
Mva1269I	GAATGC	1 cut(s)	1354
MvaI	CCWGG	3 cut(s)	537, 1337, 1716
MvnI	CGCG	1 cut(s)	288
NarI	GGCGCC	1 cut(s)	1916
NciI	CCSGG	1 cut(s)	324
NcoI	CCATGG	2 cut(s)	147, 258
NdeI	CATATG	1 cut(s)	2173
NlaIII	CATG	7 cut(s)	151, 262, 616, 647, 757, 1345, 1409
NlaIV	GGNNCC	3 cut(s)	1830, 1917, 2055
NmeAIII	GCCGAG	2 cut(s)	1107, 2136
NmuCI	GTSAC	3 cut(s)	11, 366, 1456
NsbI	TGCGCA	2 cut(s)	873, 1257
NsiI	ATGCAT	2 cut(s)	1354, 1867
NspI	RCATGY	2 cut(s)	616, 757
PaeR7I	CTCGAG	1 cut(s)	227
PagI	TCATGA	1 cut(s)	643
PaqCI	CACCTGC	1 cut(s)	169
PciSI	GCTCTTC	1 cut(s)	1642
PcsI	WCGNNNNNNNCGW	4 cut(s)	461, 486, 515, 858
PctI	GAATGC	1 cut(s)	1354
PdmI	GAANNNNTTC	1 cut(s)	1710
PflFI	GACNNNGTC	2 cut(s)	589, 1337
PflMI	CCANNNNNTGG	1 cut(s)	1891
PfoI	TCCNGGA	1 cut(s)	1714
Ple19I	CGATCG	1 cut(s)	1878
PleI	GAGTC	4 cut(s)	384, 598, 1027, 1529
PluTI	GGCGCC	1 cut(s)	1919
PpsI	GAGTC	4 cut(s)	384, 598, 1027, 1529
PpuMI	RGGWCCY	1 cut(s)	784
Psp5II	RGGWCCY	1 cut(s)	784
Psp6I	CCWGG	3 cut(s)	535, 1335, 1714
PspGI	CCWGG	3 cut(s)	535, 1335, 1714
PspN4I	GGNNCC	3 cut(s)	1830, 1917, 2055
PspPI	GGNCC	5 cut(s)	298, 784, 1687, 2002, 2108
PspPPI	RGGWCCY	1 cut(s)	784
PstI	CTGCAG	1 cut(s)	1660
PstNI	CAGNNNCTG	2 cut(s)	1655, 1891
PsuI	RGATCY	1 cut(s)	625
PsyI	GACNNNGTC	2 cut(s)	589, 1337
PvuI	CGATCG	1 cut(s)	1878
RsaI	GTAC	4 cut(s)	143, 242, 460, 926
RsaNI	GTAC	4 cut(s)	142, 241, 459, 925
SalI	GTCGAC	1 cut(s)	329
SapI	GCTCTTC	1 cut(s)	1642
SaqAI	TTAA	5 cut(s)	1049, 1092, 1431, 1613, 1806
Sau96I	GGNCC	5 cut(s)	298, 784, 1687, 2002, 2108
ScaI	AGTACT	1 cut(s)	926
SchI	GAGTC	4 cut(s)	385, 599, 1028, 1529
ScrFI	CCNGG	4 cut(s)	324, 537, 1337, 1716
SduI	GDGCHC	5 cut(s)	208, 551, 651, 1637, 2277
SexAI	ACCWGGT	1 cut(s)	1335
SfcI	CTRYAG	3 cut(s)	817, 1656, 2127
SfoI	GGCGCC	1 cut(s)	1917
Sfr274I	CTCGAG	1 cut(s)	227
SinI	GGWCC	2 cut(s)	298, 784
SlaI	CTCGAG	1 cut(s)	227
SmlI	CTYRAG	2 cut(s)	227, 1416
SmoI	CTYRAG	2 cut(s)	227, 1416
SspDI	GGCGCC	1 cut(s)	1915
SspMI	CTAG	2 cut(s)	2259, 2316
StyD4I	CCNGG	4 cut(s)	322, 535, 1335, 1714
StyI	CCWWGG	3 cut(s)	147, 258, 1055
TaaI	ACNGT	5 cut(s)	11, 52, 362, 1140, 2246
TaiI	ACGT	4 cut(s)	492, 527, 1562, 2049
TaqII	GACCGA	1 cut(s)	602
TatI	WGTACW	1 cut(s)	924
TauI	GCSGC	6 cut(s)	266, 277, 417, 473, 1108, 1126
Tru1I	TTAA	5 cut(s)	1049, 1092, 1431, 1613, 1806
Tru9I	TTAA	5 cut(s)	1049, 1092, 1431, 1613, 1806
TscAI	CASTG	3 cut(s)	2070, 2251, 2277
TseFI	GTSAC	3 cut(s)	11, 366, 1456
Tsp45I	GTSAC	3 cut(s)	11, 366, 1456
TspDTI	ATGAA	9 cut(s)	444, 452, 632, 1010, 1449, 1599, 1632, 2182, 2285
TspGWI	ACGGA	7 cut(s)	579, 1132, 1767, 1812, 1833, 2232, 2255
TspRI	CASTG	3 cut(s)	2070, 2251, 2277
Tth111I	GACNNNGTC	2 cut(s)	589, 1337
Van91I	CCANNNNNTGG	1 cut(s)	1891
VpaK11BI	GGWCC	2 cut(s)	298, 784
XapI	RAATTY	3 cut(s)	35, 711, 2189
XbaI	TCTAGA	1 cut(s)	2258
XceI	RCATGY	2 cut(s)	616, 757
XhoI	CTCGAG	1 cut(s)	227
XmiI	GTMKAC	2 cut(s)	330, 515
XmnI	GAANNNNTTC	1 cut(s)	1710
XspI	CTAG	2 cut(s)	2259, 2316
ZraI	GACGTC	1 cut(s)	525
ZrmI	AGTACT	1 cut(s)	926
Zsp2I	ATGCAT	2 cut(s)	1354, 1867

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.