Rorug03G0216300

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0001142
Physical Location & Seq
Reverse (-)
19695787 .. 19696695
909 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0216300.1

Sequence Viewer

Length: 909 bp
ATGGAGAGATCTGGATGGAAGCCAAACGATGATCATCATCACATATGCCCGAATTGCCCCCGGTGCGGTTGTTCTAACACCAAGTTTTGTTACTATAACAACTACAGTTTGACTCAGCCTAGGTACTTCTGCAAGGGCTGTAGGAGATACTGGACCAAAGGCGGGTCCCTCAGGAACGTCCCCGTCGGAGGCGGCTGCCGGAAGAACAGAAGAGGGTCAAGGTCGTTAAGGCTATCCACCAACACCACCACGGCTAACCGGAGTAATAATGTGAATAGTGGCACAATTGGGCATAATTCATATGGAATTAGTAGCTCATTGGATCCAGATTCTACTAGCTCCGGAGAGTCCAATCAGGATGCGCCACCACGTATTGATCTCGCAGTCGTTTATGCAAACTTCTTGAATCAGAAGCCAGTTTCCAGGAGTTCAGGATCTGATCAGTTGCCAGAATTTCCTGGGGAATTCAACCCGGGTTTAGATTTTTCAAGCTGTATAGCAAACATGAACATCAATGCAGGCTCAGGCTCAAGTATTCAGTTGATGGAAGAAAATGGTCTTAATGGATCAATAGGATGTCACAGTACTCTATCTGAAAATTGTGGGACCATCAATGACCACTTGTACTTTGGTGGGTTAGACCCATTAATCGATCATCATCAGAACCATCAAGATCATAGCAGTGATTTAGTACAACATGCAAGTAGTACTCATGAATCAACTGATCATTTTGGGTTGCCACCATTGCCAGACCAAGAGGTATTGTGGTCTACTTCTCACGATCAAATGATGACTAGTCCTATCATGCAACCTACCCCTGTGCTCGGATCAGAGTCTCATGATCCAAACCTGTTAAATTGGAGCCCCTTATTCGATTTACCATGTAATGGAACTTTCTCCAGGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

302

Amino Acids

33.12

Weight (kDa)

6.07

Isoelectric Point (pI)

47.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 18 - 71 2.9e-29 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 887
AccI GTMKAC 1 cut(s) 770
AccIII TCCGGA 1 cut(s) 341
AciI CCGC 3 cut(s) 66, 162, 192
AclWI GGATC 6 cut(s) 317, 330, 442, 574, 835, 836
AcsI RAATTY 2 cut(s) 452, 464
AfaI GTAC 5 cut(s) 125, 586, 626, 693, 709
AfiI CCNNNNNNNGG 5 cut(s) 65, 162, 188, 824, 887
AgsI TTSAA 3 cut(s) 406, 469, 489
AhlI ACTAGT 1 cut(s) 794
AjnI CCWGG 3 cut(s) 422, 457, 899
AluBI AGCT 3 cut(s) 315, 339, 492
AluI AGCT 3 cut(s) 315, 339, 492
Alw21I GWGCWC 1 cut(s) 825
Alw26I GTCTC 1 cut(s) 840
AlwI GGATC 6 cut(s) 317, 330, 442, 574, 835, 836
AlwNI CAGNNNCTG 1 cut(s) 437
Ama87I CYCGRG 1 cut(s) 472
Aor13HI TCCGGA 1 cut(s) 341
ApeKI GCWGC 1 cut(s) 195
ApoI RAATTY 2 cut(s) 452, 464
AseI ATTAAT 1 cut(s) 647
AspA2I CCTAGG 1 cut(s) 119
AspLEI GCGC 1 cut(s) 364
AspS9I GGNCC 3 cut(s) 153, 165, 606
AsuC2I CCSGG 3 cut(s) 61, 473, 474
AvaI CYCGRG 1 cut(s) 472
AvaII GGWCC 3 cut(s) 153, 165, 606
AvrII CCTAGG 1 cut(s) 119
AxyI CCTNAGG 1 cut(s) 170
BamHI GGATCC 1 cut(s) 322
BanII GRGCYC 1 cut(s) 866
Bbv12I GWGCWC 1 cut(s) 825
BbvI GCAGC 1 cut(s) 182
BccI CCATC 4 cut(s) 9, 538, 617, 675
BceAI ACGGC 1 cut(s) 267
BciT130I CCWGG 3 cut(s) 424, 459, 901
BclI TGATCA 3 cut(s) 31, 439, 724
BcnI CCSGG 3 cut(s) 61, 473, 474
BcoDI GTCTC 1 cut(s) 840
BcuI ACTAGT 1 cut(s) 794
BfaI CTAG 3 cut(s) 120, 336, 795
BfmI CTRYAG 2 cut(s) 103, 139
BglII AGATCT 1 cut(s) 8
BisI GCNGC 2 cut(s) 193, 196
BlnI CCTAGG 1 cut(s) 119
BlsI GCNGC 2 cut(s) 194, 197
BmcAI AGTACT 2 cut(s) 586, 709
Bme1390I CCNGG 6 cut(s) 61, 424, 459, 473, 474, 901
Bme18I GGWCC 3 cut(s) 153, 165, 606
BmeT110I CYCGRG 1 cut(s) 472
BmgT120I GGNCC 3 cut(s) 153, 165, 606
BmiI GGNNCC 5 cut(s) 166, 167, 324, 607, 863
BmrFI CCNGG 6 cut(s) 61, 424, 459, 473, 474, 901
BmsI GCATC 1 cut(s) 349
BpmI CTGGAG 1 cut(s) 883
Bpu10I CCTNAGC 1 cut(s) 523
BpuEI CTTGAG 1 cut(s) 514
BpuMI CCSGG 3 cut(s) 61, 473, 474
Bsa29I ATCGAT 1 cut(s) 651
BsaAI YACGTR 1 cut(s) 371
BsaBI GATNNNNATC 3 cut(s) 33, 36, 657
BsaJI CCNNGG 5 cut(s) 59, 119, 249, 458, 472
BsaWI WCCGGW 2 cut(s) 258, 341
Bsc4I CCNNNNNNNGG 5 cut(s) 65, 162, 188, 824, 887
Bse1I ACTGG 2 cut(s) 155, 416
Bse21I CCTNAGG 1 cut(s) 170
Bse3DI GCAATG 1 cut(s) 743
Bse8I GATNNNNATC 3 cut(s) 33, 36, 657
BseAI TCCGGA 1 cut(s) 341
BseBI CCWGG 3 cut(s) 424, 459, 901
BseCI ATCGAT 1 cut(s) 651
BseDI CCNNGG 5 cut(s) 59, 119, 249, 458, 472
BseGI GGATG 3 cut(s) 20, 364, 581
BseJI GATNNNNATC 3 cut(s) 33, 36, 657
BseLI CCNNNNNNNGG 5 cut(s) 65, 162, 188, 824, 887
BseMI GCAATG 1 cut(s) 743
BseMII CTCAG 3 cut(s) 128, 184, 537
BseNI ACTGG 2 cut(s) 155, 416
BseXI GCAGC 1 cut(s) 182
BshVI ATCGAT 1 cut(s) 651
BsiHKAI GWGCWC 1 cut(s) 825
BsiHKCI CYCGRG 1 cut(s) 472
BsiSI CCGG 5 cut(s) 61, 199, 259, 342, 473
BslFI GGGAC 3 cut(s) 151, 164, 619
BslI CCNNNNNNNGG 5 cut(s) 65, 162, 188, 824, 887
BsmAI GTCTC 1 cut(s) 840
BsmFI GGGAC 3 cut(s) 151, 164, 619
BsoBI CYCGRG 1 cut(s) 472
Bsp1286I GDGCHC 2 cut(s) 825, 866
Bsp13I TCCGGA 1 cut(s) 341
BspACI CCGC 3 cut(s) 66, 162, 192
BspCNI CTCAG 3 cut(s) 127, 183, 536
BspDI ATCGAT 1 cut(s) 651
BspEI TCCGGA 1 cut(s) 341
BspHI TCATGA 2 cut(s) 712, 838
BspLI GGNNCC 5 cut(s) 166, 167, 324, 607, 863
BspPI GGATC 6 cut(s) 317, 330, 442, 574, 835, 836
BsrDI GCAATG 1 cut(s) 743
BsrI ACTGG 2 cut(s) 155, 416
BssECI CCNNGG 5 cut(s) 59, 119, 249, 458, 472
BssT1I CCWWGG 1 cut(s) 119
Bst2UI CCWGG 3 cut(s) 424, 459, 901
Bst4CI ACNGT 2 cut(s) 107, 584
Bst6I CTCTTC 1 cut(s) 205
BstBAI YACGTR 1 cut(s) 371
BstC8I GCNNGC 1 cut(s) 520
BstDEI CTNAG 3 cut(s) 114, 170, 523
BstDSI CCRYGG 1 cut(s) 249
BstF5I GGATG 3 cut(s) 20, 364, 581
BstHHI GCGC 1 cut(s) 364
BstMAI GTCTC 1 cut(s) 840
BstMWI GCNNNNNNNGC 3 cut(s) 54, 63, 745
BstNI CCWGG 3 cut(s) 424, 459, 901
BstNSI RCATGY 1 cut(s) 701
BstSCI CCNGG 6 cut(s) 59, 422, 457, 471, 472, 899
BstSFI CTRYAG 2 cut(s) 103, 139
BstV1I GCAGC 1 cut(s) 182
BstX2I RGATCY 3 cut(s) 8, 322, 434
BstYI RGATCY 3 cut(s) 8, 322, 434
Bsu15I ATCGAT 1 cut(s) 651
Bsu36I CCTNAGG 1 cut(s) 170
BsuTUI ATCGAT 1 cut(s) 651
BtgI CCRYGG 1 cut(s) 249
BtsCI GGATG 3 cut(s) 20, 364, 581
BtsI GCAGTG 1 cut(s) 688
BtsIMutI CAGTG 1 cut(s) 688
Cac8I GCNNGC 1 cut(s) 520
CaiI CAGNNNCTG 1 cut(s) 437
CciI TCATGA 2 cut(s) 712, 838
CfoI GCGC 1 cut(s) 364
Cfr13I GGNCC 3 cut(s) 153, 165, 606
Cfr9I CCCGGG 1 cut(s) 472
ClaI ATCGAT 1 cut(s) 651
Csp6I GTAC 5 cut(s) 124, 585, 625, 692, 708
CviAII CATG 7 cut(s) 505, 698, 713, 805, 839, 882, 906
CviQI GTAC 5 cut(s) 124, 585, 625, 692, 708
DdeI CTNAG 3 cut(s) 114, 170, 523
Eam1104I CTCTTC 1 cut(s) 205
EarI CTCTTC 1 cut(s) 205
Eco130I CCWWGG 1 cut(s) 119
Eco24I GRGCYC 1 cut(s) 866
Eco47I GGWCC 3 cut(s) 153, 165, 606
Eco81I CCTNAGG 1 cut(s) 170
Eco88I CYCGRG 1 cut(s) 472
EcoO109I RGGNCCY 1 cut(s) 165
EcoRI GAATTC 1 cut(s) 464
EcoRII CCWGG 3 cut(s) 422, 457, 899
EcoT14I CCWWGG 1 cut(s) 119
EcoT38I GRGCYC 1 cut(s) 866
ErhI CCWWGG 1 cut(s) 119
FaeI CATG 7 cut(s) 508, 701, 716, 808, 842, 885, 909
FaqI GGGAC 3 cut(s) 151, 164, 619
FatI CATG 7 cut(s) 504, 697, 712, 804, 838, 881, 905
FauI CCCGC 1 cut(s) 155
FauNDI CATATG 2 cut(s) 44, 301
FbaI TGATCA 3 cut(s) 31, 439, 724
FblI GTMKAC 1 cut(s) 770
Fnu4HI GCNGC 2 cut(s) 193, 196
FokI GGATG 3 cut(s) 27, 371, 588
FriOI GRGCYC 1 cut(s) 866
Fsp4HI GCNGC 2 cut(s) 193, 196
FspBI CTAG 3 cut(s) 120, 336, 795
GlaI GCGC 1 cut(s) 363
GluI GCNGC 2 cut(s) 193, 196
GsuI CTGGAG 1 cut(s) 883
HapII CCGG 5 cut(s) 61, 199, 259, 342, 473
HhaI GCGC 1 cut(s) 364
Hin1II CATG 7 cut(s) 508, 701, 716, 808, 842, 885, 909
Hin6I GCGC 1 cut(s) 362
HinP1I GCGC 1 cut(s) 362
HinfI GANTC 6 cut(s) 112, 329, 347, 406, 716, 833
HpaII CCGG 5 cut(s) 61, 199, 259, 342, 473
Hpy166II GTNNAC 1 cut(s) 771
Hpy188I TCNGA 7 cut(s) 188, 411, 439, 595, 663, 827, 832
Hpy8I GTNNAC 1 cut(s) 771
Hpy99I CGWCG 1 cut(s) 188
HpyCH4III ACNGT 2 cut(s) 107, 584
HpyCH4IV ACGT 2 cut(s) 177, 370
HpyCH4V TGCA 5 cut(s) 132, 395, 518, 701, 808
HpyF10VI GCNNNNNNNGC 3 cut(s) 54, 63, 745
HpyF3I CTNAG 3 cut(s) 114, 170, 523
HpySE526I ACGT 2 cut(s) 177, 370
Hsp92II CATG 7 cut(s) 508, 701, 716, 808, 842, 885, 909
HspAI GCGC 1 cut(s) 362
KflI GGGWCCC 1 cut(s) 165
Kpn2I TCCGGA 1 cut(s) 341
Ksp22I TGATCA 3 cut(s) 31, 439, 724
LmnI GCTCC 2 cut(s) 344, 861
Lsp1109I GCAGC 1 cut(s) 182
LweI GCATC 1 cut(s) 349
MaeI CTAG 3 cut(s) 120, 336, 795
MaeII ACGT 2 cut(s) 177, 370
MaeIII GTNAC 2 cut(s) 89, 578
MboII GAAGA 3 cut(s) 214, 222, 560
MfeI CAATTG 1 cut(s) 285
MflI RGATCY 3 cut(s) 8, 322, 434
MhlI GDGCHC 2 cut(s) 825, 866
MluCI AATT 8 cut(s) 52, 285, 295, 306, 452, 464, 598, 856
MlyI GAGTC 3 cut(s) 106, 356, 842
MmeI TCCRAC 1 cut(s) 166
MnlI CCTC 4 cut(s) 179, 182, 206, 751
MroI TCCGGA 1 cut(s) 341
MseI TTAA 4 cut(s) 227, 561, 647, 854
MslI CAYNNNNRTG 1 cut(s) 681
MspI CCGG 5 cut(s) 61, 199, 259, 342, 473
MspR9I CCNGG 6 cut(s) 61, 424, 459, 473, 474, 901
MunI CAATTG 1 cut(s) 285
MvaI CCWGG 3 cut(s) 424, 459, 901
MwoI GCNNNNNNNGC 3 cut(s) 54, 63, 745
NciI CCSGG 3 cut(s) 61, 473, 474
NdeI CATATG 2 cut(s) 44, 301
NlaIII CATG 7 cut(s) 508, 701, 716, 808, 842, 885, 909
NlaIV GGNNCC 5 cut(s) 166, 167, 324, 607, 863
NmuCI GTSAC 1 cut(s) 578
NspI RCATGY 1 cut(s) 701
PagI TCATGA 2 cut(s) 712, 838
PfeI GAWTC 3 cut(s) 329, 406, 716
PflMI CCANNNNNTGG 1 cut(s) 887
PfoI TCCNGGA 2 cut(s) 422, 899
PkrI GCNGC 2 cut(s) 194, 197
PleI GAGTC 3 cut(s) 106, 355, 841
PpsI GAGTC 3 cut(s) 106, 355, 841
Ppu21I YACGTR 1 cut(s) 371
PpuMI RGGWCCY 1 cut(s) 165
PshBI ATTAAT 1 cut(s) 647
Psp5II RGGWCCY 1 cut(s) 165
Psp6I CCWGG 3 cut(s) 422, 457, 899
PspGI CCWGG 3 cut(s) 422, 457, 899
PspN4I GGNNCC 5 cut(s) 166, 167, 324, 607, 863
PspPI GGNCC 3 cut(s) 153, 165, 606
PspPPI RGGWCCY 1 cut(s) 165
PstNI CAGNNNCTG 1 cut(s) 437
PsuI RGATCY 3 cut(s) 8, 322, 434
RsaI GTAC 5 cut(s) 125, 586, 626, 693, 709
RsaNI GTAC 5 cut(s) 124, 585, 625, 692, 708
RseI CAYNNNNRTG 1 cut(s) 681
SaqAI TTAA 4 cut(s) 227, 561, 647, 854
SatI GCNGC 2 cut(s) 193, 196
Sau96I GGNCC 3 cut(s) 153, 165, 606
ScaI AGTACT 2 cut(s) 586, 709
SchI GAGTC 3 cut(s) 106, 356, 842
ScrFI CCNGG 6 cut(s) 61, 424, 459, 473, 474, 901
SduI GDGCHC 2 cut(s) 825, 866
SfaNI GCATC 1 cut(s) 349
SfcI CTRYAG 2 cut(s) 103, 139
SinI GGWCC 3 cut(s) 153, 165, 606
SmaI CCCGGG 1 cut(s) 474
SmiMI CAYNNNNRTG 1 cut(s) 681
SmlI CTYRAG 1 cut(s) 529
SmoI CTYRAG 1 cut(s) 529
SpeI ACTAGT 1 cut(s) 794
Sse9I AATT 8 cut(s) 52, 285, 295, 306, 452, 464, 598, 856
SsiI CCGC 3 cut(s) 66, 162, 192
SspMI CTAG 3 cut(s) 120, 336, 795
StyD4I CCNGG 6 cut(s) 59, 422, 457, 471, 472, 899
StyI CCWWGG 1 cut(s) 119
TaaI ACNGT 2 cut(s) 107, 584
TaiI ACGT 2 cut(s) 180, 373
TaqI TCGA 2 cut(s) 651, 873
TasI AATT 8 cut(s) 52, 285, 295, 306, 452, 464, 598, 856
TatI WGTACW 4 cut(s) 584, 624, 691, 707
TauI GCSGC 1 cut(s) 195
TfiI GAWTC 3 cut(s) 329, 406, 716
Tru1I TTAA 4 cut(s) 227, 561, 647, 854
Tru9I TTAA 4 cut(s) 227, 561, 647, 854
TscAI CASTG 1 cut(s) 688
TseFI GTSAC 1 cut(s) 578
TseI GCWGC 1 cut(s) 195
Tsp45I GTSAC 1 cut(s) 578
TspDTI ATGAA 3 cut(s) 288, 521, 729
TspMI CCCGGG 1 cut(s) 472
TspRI CASTG 1 cut(s) 688
Van91I CCANNNNNTGG 1 cut(s) 887
VpaK11BI GGWCC 3 cut(s) 153, 165, 606
VspI ATTAAT 1 cut(s) 647
XapI RAATTY 2 cut(s) 452, 464
XceI RCATGY 1 cut(s) 701
XcmI CCANNNNNNNNNTGG 1 cut(s) 626
XmaI CCCGGG 1 cut(s) 472
XmaJI CCTAGG 1 cut(s) 119
XmiI GTMKAC 1 cut(s) 770
XspI CTAG 3 cut(s) 120, 336, 795
ZrmI AGTACT 2 cut(s) 586, 709
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.