Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001142

Physical Location & Seq

Genomic Coordinates Forward (+)

9471930 .. 9475118

Gene Structure 3189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027197

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGAGGACCAACGCCGTTGCAAGAGCCGCAAAACCTCCTCGTCCTCGTCGGAGAGCAGACCTCTGTTACAACTATCCCAGCTTTCGGCATTCTCATTATCAAACACCGGTTCGTGCAGACAACACTTCATTTTCAAAGGACAATGAAGATGATGATCCATTGCCAGGTATAGACTGCCTCCAAATTCCAGGTGAAGCTCTTCCGGGATGTAAACTCCAAGCATGTGGATACCTAACCAAGGGAGCAACAAGTTGCAACTTTCAGTGGCCTCTAGATGATCAAAGAAACAGAAAGGGAGAGCTTGAAAAAGTCTTTGCCAATAAGCACAACAAGATCAGCTTTGGCCCTAAAATGCAATACCAGATACACAAAATACTTTTCGAGGGTGAGAAATCACTATCGAGTAGGAGATCTTACCGAGTTGAAGACCTTGTCTTTGGTGGAGTTGGTGTTATAATCCCTGACCAAAAGTATTCGCTGCACACAGTTGTTTCGATTCCTCATGGAAGTCCTGTAGAATTTATGATAACTGATTTTGATACTAGCTGCGGTGAAGTTGTGGATGATGATCGAACACCAGCTATGAACCAGGTTGCTTCTAAATGTGCCCCAGAACACTTCAAATGTGATCGCGGCTGTGAATTCTTCACCAACAGGCAACTTGTTACAATTTCATCAGCCCCCAACTTCCGCAGTGAACATGACAATGCTGGAGCTATGATGAGACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

244

Amino Acids

27.36

Weight (kDa)

8.05

Isoelectric Point (pI)

39.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001142)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08440 AT5G08440 AT5G08440 AT5G23490 AT5G23490 AT5G23490 AT5G23490 AT5G23510 AT5G23510 AT5G23510
fragaria_vesca	FvH4_1g25960 FvH4_1g25960 FvH4_1g25960 FvH4_1g25960 FvH4_1g25960 FvH4_1g25960 FvH4_3g21410 FvH4_7g23540
malus_domestica	MD03G1185400.v1.1 MD04G1186900.v1.1 MD11G1230900.v1.1
prunus_persica	Prupe.4G196300_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1
pyrus_communis	pycom03g16520 pycom03g16530
rosa_chinensis	RchiOBHm_Chr1g0368691 RchiOBHm_Chr3g0485101 RchiOBHm_Chr5g0036791
rosa_laevigata	RLG00000023166 RLG00000027197 RLG00000033721
rosa_multiflora	Rmu_co8159396.1_g000001 Rmu_sc0000399.1_g000002 Rmu_sc0006040.1_g000006 Rmu_sc0006040.1_g000007
rosa_roxburghii	Rroxscaffold_1G00044160 Rroxscaffold_4G00288350 Rroxscaffold_6G00397190
rosa_rugosa	Rorug01G0343700 Rorug03G0216200 Rorug03G0216300
rosa_samantha	Rh3AG266300 Rh3BG301700 Rh3CG300000 Rh3DG295800 Rh5AG250300 Rh5BG252000 Rh5CG284000 Rh5DG260300
rosa_wichuraiana	Rw5G023020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	455
AccII	CGCG	1 cut(s)	633
AciI	CCGC	4 cut(s)	27, 549, 633, 691
AclWI	GGATC	1 cut(s)	149
AcsI	RAATTY	3 cut(s)	183, 518, 641
AfiI	CCNNNNNNNGG	3 cut(s)	84, 164, 238
AgeI	ACCGGT	1 cut(s)	106
AgsI	TTSAA	4 cut(s)	135, 305, 425, 622
AjnI	CCWGG	3 cut(s)	163, 187, 588
AluBI	AGCT	7 cut(s)	81, 197, 301, 339, 546, 581, 716
AluI	AGCT	7 cut(s)	81, 197, 301, 339, 546, 581, 716
Alw26I	GTCTC	1 cut(s)	718
AlwI	GGATC	1 cut(s)	149
AoxI	GGCC	2 cut(s)	266, 343
ApeKI	GCWGC	2 cut(s)	478, 546
ApoI	RAATTY	3 cut(s)	183, 518, 641
ArsI	GACNNNNNNTTYG	2 cut(s)	419, 451
AsiGI	ACCGGT	1 cut(s)	106
Asp700I	GAANNNNTTC	1 cut(s)	198
AspS9I	GGNCC	2 cut(s)	6, 344
AsuC2I	CCSGG	1 cut(s)	204
AsuHPI	GGTGA	4 cut(s)	203, 398, 563, 640
AvaII	GGWCC	1 cut(s)	6
BaeGI	GKGCMC	1 cut(s)	610
BbsI	GAAGAC	1 cut(s)	432
BbvI	GCAGC	2 cut(s)	465, 533
BciT130I	CCWGG	3 cut(s)	165, 189, 590
BciVI	GTATCC	1 cut(s)	221
BclI	TGATCA	1 cut(s)	277
BcnI	CCSGG	1 cut(s)	204
BcoDI	GTCTC	1 cut(s)	718
BfaI	CTAG	2 cut(s)	272, 543
BfmI	CTRYAG	1 cut(s)	513
BfuI	GTATCC	1 cut(s)	221
BglII	AGATCT	1 cut(s)	410
BisI	GCNGC	4 cut(s)	27, 479, 547, 634
BlsI	GCNGC	4 cut(s)	28, 480, 548, 635
Bme1390I	CCNGG	4 cut(s)	165, 189, 204, 590
Bme18I	GGWCC	1 cut(s)	6
BmgT120I	GGNCC	2 cut(s)	6, 344
BmrFI	CCNGG	4 cut(s)	165, 189, 204, 590
BpiI	GAAGAC	1 cut(s)	432
BplI	GAGNNNNNCTC	2 cut(s)	45, 77
BpmI	CTGGAG	1 cut(s)	732
BpuMI	CCSGG	1 cut(s)	204
BsaBI	GATNNNNATC	2 cut(s)	153, 567
BsaI	GGTCTC	1 cut(s)	718
BsaJI	CCNNGG	1 cut(s)	237
BsaWI	WCCGGW	1 cut(s)	106
BsaXI	ACNNNNNCTCC	2 cut(s)	435, 465
Bsc4I	CCNNNNNNNGG	3 cut(s)	84, 164, 238
Bse118I	RCCGGY	1 cut(s)	106
Bse3DI	GCAATG	1 cut(s)	158
Bse8I	GATNNNNATC	2 cut(s)	153, 567
BseBI	CCWGG	3 cut(s)	165, 189, 590
BseDI	CCNNGG	1 cut(s)	237
BseGI	GGATG	2 cut(s)	212, 568
BseJI	GATNNNNATC	2 cut(s)	153, 567
BseLI	CCNNNNNNNGG	3 cut(s)	84, 164, 238
BseMI	GCAATG	1 cut(s)	158
BseRI	GAGGAG	1 cut(s)	27
BseSI	GKGCMC	1 cut(s)	610
BseXI	GCAGC	2 cut(s)	465, 533
BseYI	CCCAGC	1 cut(s)	77
BsgI	GTGCAG	2 cut(s)	135, 464
Bsh1236I	CGCG	1 cut(s)	633
BshFI	GGCC	2 cut(s)	268, 345
BshTI	ACCGGT	1 cut(s)	106
BsiSI	CCGG	2 cut(s)	107, 203
BslI	CCNNNNNNNGG	3 cut(s)	84, 164, 238
BsmAI	GTCTC	1 cut(s)	718
BsmI	GAATGC	1 cut(s)	88
BsnI	GGCC	2 cut(s)	268, 345
Bso31I	GGTCTC	1 cut(s)	718
Bsp1286I	GDGCHC	1 cut(s)	610
Bsp143I	GATC	6 cut(s)	154, 277, 333, 410, 568, 628
BspACI	CCGC	4 cut(s)	27, 549, 633, 691
BspANI	GGCC	2 cut(s)	268, 345
BspFNI	CGCG	1 cut(s)	633
BspPI	GGATC	1 cut(s)	149
BspQI	GCTCTTC	1 cut(s)	204
BspTNI	GGTCTC	1 cut(s)	718
BsrDI	GCAATG	1 cut(s)	158
BsrFI	RCCGGY	1 cut(s)	106
BssAI	RCCGGY	1 cut(s)	106
BssECI	CCNNGG	1 cut(s)	237
BssMI	GATC	6 cut(s)	154, 277, 333, 410, 568, 628
BssT1I	CCWWGG	1 cut(s)	237
Bst2UI	CCWGG	3 cut(s)	165, 189, 590
Bst4CI	ACNGT	1 cut(s)	487
Bst6I	CTCTTC	1 cut(s)	204
BstENI	CCTNNNNNAGG	1 cut(s)	236
BstF5I	GGATG	2 cut(s)	212, 568
BstFNI	CGCG	1 cut(s)	633
BstKTI	GATC	6 cut(s)	157, 280, 336, 413, 571, 631
BstMAI	GTCTC	1 cut(s)	718
BstMBI	GATC	6 cut(s)	154, 277, 333, 410, 568, 628
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstNI	CCWGG	3 cut(s)	165, 189, 590
BstNSI	RCATGY	1 cut(s)	225
BstSCI	CCNGG	4 cut(s)	163, 187, 202, 588
BstSFI	CTRYAG	1 cut(s)	513
BstSLI	GKGCMC	1 cut(s)	610
BstUI	CGCG	1 cut(s)	633
BstV1I	GCAGC	2 cut(s)	465, 533
BstV2I	GAAGAC	1 cut(s)	432
BstX2I	RGATCY	1 cut(s)	410
BstXI	CCANNNNNNTGG	1 cut(s)	224
BstYI	RGATCY	1 cut(s)	410
BsuI	GTATCC	1 cut(s)	221
BsuRI	GGCC	2 cut(s)	268, 345
BtsCI	GGATG	2 cut(s)	212, 568
BtsI	GCAGTG	1 cut(s)	700
BtsIMutI	CAGTG	2 cut(s)	269, 700
Cfr10I	RCCGGY	1 cut(s)	106
Cfr13I	GGNCC	2 cut(s)	6, 344
CsiI	ACCWGGT	1 cut(s)	588
CspAI	ACCGGT	1 cut(s)	106
CviAII	CATG	3 cut(s)	222, 503, 701
DpnI	GATC	6 cut(s)	156, 279, 335, 412, 570, 630
DpnII	GATC	6 cut(s)	154, 277, 333, 410, 568, 628
Eam1104I	CTCTTC	1 cut(s)	204
EarI	CTCTTC	1 cut(s)	204
Eco130I	CCWWGG	1 cut(s)	237
Eco31I	GGTCTC	1 cut(s)	718
Eco47I	GGWCC	1 cut(s)	6
EcoNI	CCTNNNNNAGG	1 cut(s)	236
EcoRI	GAATTC	1 cut(s)	641
EcoRII	CCWGG	3 cut(s)	163, 187, 588
EcoT14I	CCWWGG	1 cut(s)	237
ErhI	CCWWGG	1 cut(s)	237
FaeI	CATG	3 cut(s)	225, 506, 704
FaiI	YATR	8 cut(s)	170, 223, 455, 504, 524, 584, 702, 719
FalI	AAGNNNNNCTT	2 cut(s)	323, 355
FatI	CATG	3 cut(s)	221, 502, 700
FbaI	TGATCA	1 cut(s)	277
Fnu4HI	GCNGC	4 cut(s)	27, 479, 547, 634
FokI	GGATG	2 cut(s)	219, 575
Fsp4HI	GCNGC	4 cut(s)	27, 479, 547, 634
FspBI	CTAG	2 cut(s)	272, 543
GluI	GCNGC	4 cut(s)	27, 479, 547, 634
GsaI	CCCAGC	1 cut(s)	81
GsuI	CTGGAG	1 cut(s)	732
HaeIII	GGCC	2 cut(s)	268, 345
HapII	CCGG	2 cut(s)	107, 203
Hin1II	CATG	3 cut(s)	225, 506, 704
HinfI	GANTC	1 cut(s)	496
HpaII	CCGG	2 cut(s)	107, 203
HphI	GGTGA	4 cut(s)	203, 398, 563, 640
Hpy166II	GTNNAC	2 cut(s)	212, 698
Hpy188I	TCNGA	1 cut(s)	51
Hpy188III	TCNNGA	1 cut(s)	272
Hpy8I	GTNNAC	2 cut(s)	212, 698
Hpy99I	CGWCG	1 cut(s)	51
HpyCH4III	ACNGT	1 cut(s)	487
HpyCH4V	TGCA	5 cut(s)	20, 116, 255, 355, 481
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
Hsp92II	CATG	3 cut(s)	225, 506, 704
Ksp22I	TGATCA	1 cut(s)	277
Kzo9I	GATC	6 cut(s)	154, 277, 333, 410, 568, 628
LguI	GCTCTTC	1 cut(s)	204
LmnI	GCTCC	2 cut(s)	242, 713
Lsp1109I	GCAGC	2 cut(s)	465, 533
MabI	ACCWGGT	1 cut(s)	588
MaeI	CTAG	2 cut(s)	272, 543
MaeIII	GTNAC	2 cut(s)	65, 664
MalI	GATC	6 cut(s)	156, 279, 335, 412, 570, 630
MboI	GATC	6 cut(s)	154, 277, 333, 410, 568, 628
MboII	GAAGA	4 cut(s)	158, 191, 437, 637
MflI	RGATCY	1 cut(s)	410
MhlI	GDGCHC	1 cut(s)	610
MluCI	AATT	4 cut(s)	183, 518, 641, 669
MmeI	TCCRAC	1 cut(s)	29
MnlI	CCTC	8 cut(s)	45, 48, 54, 71, 188, 279, 376, 510
MroXI	GAANNNNTTC	1 cut(s)	198
MseI	TTAA	1 cut(s)	730
MslI	CAYNNNNRTG	1 cut(s)	705
MspI	CCGG	2 cut(s)	107, 203
MspR9I	CCNGG	4 cut(s)	165, 189, 204, 590
Mva1269I	GAATGC	1 cut(s)	88
MvaI	CCWGG	3 cut(s)	165, 189, 590
MvnI	CGCG	1 cut(s)	633
MwoI	GCNNNNNNNGC	1 cut(s)	26
NciI	CCSGG	1 cut(s)	204
NdeII	GATC	6 cut(s)	154, 277, 333, 410, 568, 628
NlaIII	CATG	3 cut(s)	225, 506, 704
NspI	RCATGY	1 cut(s)	225
PciSI	GCTCTTC	1 cut(s)	204
PctI	GAATGC	1 cut(s)	88
PdmI	GAANNNNTTC	1 cut(s)	198
PfeI	GAWTC	1 cut(s)	496
PflFI	GACNNNGTC	1 cut(s)	431
PfoI	TCCNGGA	1 cut(s)	202
PinAI	ACCGGT	1 cut(s)	106
PkrI	GCNGC	4 cut(s)	28, 480, 548, 635
PsiI	TTATAA	1 cut(s)	455
Psp6I	CCWGG	3 cut(s)	163, 187, 588
PspFI	CCCAGC	1 cut(s)	77
PspGI	CCWGG	3 cut(s)	163, 187, 588
PspPI	GGNCC	2 cut(s)	6, 344
PsuI	RGATCY	1 cut(s)	410
PsyI	GACNNNGTC	1 cut(s)	431
RseI	CAYNNNNRTG	1 cut(s)	705
SapI	GCTCTTC	1 cut(s)	204
SaqAI	TTAA	1 cut(s)	730
SatI	GCNGC	4 cut(s)	27, 479, 547, 634
Sau3AI	GATC	6 cut(s)	154, 277, 333, 410, 568, 628
Sau96I	GGNCC	2 cut(s)	6, 344
ScrFI	CCNGG	4 cut(s)	165, 189, 204, 590
SduI	GDGCHC	1 cut(s)	610
SexAI	ACCWGGT	1 cut(s)	588
SfcI	CTRYAG	1 cut(s)	513
SinI	GGWCC	1 cut(s)	6
SmiMI	CAYNNNNRTG	1 cut(s)	705
Sse9I	AATT	4 cut(s)	183, 518, 641, 669
SsiI	CCGC	4 cut(s)	27, 549, 633, 691
SspMI	CTAG	2 cut(s)	272, 543
StyD4I	CCNGG	4 cut(s)	163, 187, 202, 588
StyI	CCWWGG	1 cut(s)	237
TaaI	ACNGT	1 cut(s)	487
TaqI	TCGA	4 cut(s)	381, 401, 494, 571
TasI	AATT	4 cut(s)	183, 518, 641, 669
TauI	GCSGC	2 cut(s)	29, 636
TfiI	GAWTC	1 cut(s)	496
Tru1I	TTAA	1 cut(s)	730
Tru9I	TTAA	1 cut(s)	730
TscAI	CASTG	2 cut(s)	269, 700
TseI	GCWGC	2 cut(s)	478, 546
TspDTI	ATGAA	4 cut(s)	117, 159, 599, 663
TspRI	CASTG	2 cut(s)	269, 700
Tth111I	GACNNNGTC	1 cut(s)	431
VpaK11BI	GGWCC	1 cut(s)	6
XagI	CCTNNNNNAGG	1 cut(s)	236
XapI	RAATTY	3 cut(s)	183, 518, 641
XbaI	TCTAGA	1 cut(s)	271
XceI	RCATGY	1 cut(s)	225
XmnI	GAANNNNTTC	1 cut(s)	198
XspI	CTAG	2 cut(s)	272, 543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.