RchiOBHm_Chr1g0368691

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001142
Physical Location & Seq
Reverse (-)
58697362 .. 58698261
900 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59302

Sequence Viewer

Length: 900 bp
ATGAGGGCCAACGCCGTTGCAAGAGCCACAAAACCTGCTCGTCCTCGCCGGAGAGCAGACCTCTGTTACAATTATCCCAGCTCTCAGCATTCTCATTATCAAACACCGGTTCTTGTAGAAAACCCTTCATTTTCAAAGGACAATGAAGATGATGATCCATTGCCAGGTATAGACTGCCTCCAAATTCCAGGTGAAGCTCTTCCGGGATGCGAACTCCAAGCATGTGGATACCTAACTAAGGGAGCAACAAGTTGCAACTTTCAGTGGGTGCGCCATCATCCGGATGGATCATTTCATTACATTAATGGAGAAACAAAACCAAAATATCTCATTACTGCTGACGATGTTGATGCATACCTTGCTATTGAAGTTGAGCCTCTAGATGATCAAAGAAACAGAAAGGGAGAGCTTGAAAAAGTCTTTGCCAATAAGCACCACAAGATCAGTTTTGGCCCTAAAATGCAATACAAGATACACAAAATACTTTTCGAGGGTGAGAAATCACTTCGAGTGTTTCATTTCACTCGATGTCTTAATAAATGGCAATCTGCTATGTTGGTTATTAAGAGGAGATCTTACCGGGTTGAAGACCTTGTCTTTGGTGGAGTTAGTGTTATACTCCCTGACCAAAAGTTTTCGCTGCACACAGTTGTTTCGATTCCTTCTGGAAGTCCTTTAGAATTCATGATAAGTGACTTTGATAGCAGCTGCGGTGAAGTTGGTGATCATCTATTCAAATTAATGGACACATCAATTTATTGGTCTAGAGATGTAGTTGTGCTCATACTGAGATCATTTATCCAAAGAGTTGTTCAAAAAAGCTCAAGCGAAGGAAAAGGAAAGCTGGAGGAGAAGGAGAAAACAAAAGATTTTTCTTTCTTTCCTGAAAATCCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

299

Amino Acids

34.08

Weight (kDa)

7.64

Isoelectric Point (pI)

46.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IG_AIR9 PF23197 60 - 129 1.6e-06 AIR9 A9 domain
DUF7046 PF23080 175 - 275 2.8e-07 Domain of unknown function (DUF7046)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 43
AccIII TCCGGA 1 cut(s) 280
AciI CCGC 1 cut(s) 711
AclWI GGATC 2 cut(s) 149, 295
AcsI RAATTY 2 cut(s) 183, 680
AfiI CCNNNNNNNGG 3 cut(s) 164, 238, 280
AgeI ACCGGT 1 cut(s) 106
AgsI TTSAA 6 cut(s) 135, 368, 413, 587, 736, 815
AjnI CCWGG 2 cut(s) 163, 187
AjuI GAANNNNNNNTTGG 2 cut(s) 795, 827
AluBI AGCT 6 cut(s) 81, 197, 409, 708, 822, 844
AluI AGCT 6 cut(s) 81, 197, 409, 708, 822, 844
Alw21I GWGCWC 1 cut(s) 783
AlwI GGATC 2 cut(s) 149, 295
Aor13HI TCCGGA 1 cut(s) 280
AoxI GGCC 2 cut(s) 6, 451
ApeKI GCWGC 3 cut(s) 640, 705, 708
ApoI RAATTY 2 cut(s) 183, 680
ArsI GACNNNNNNTTYG 2 cut(s) 581, 613
AseI ATTAAT 2 cut(s) 303, 740
AsiGI ACCGGT 1 cut(s) 106
Asp700I GAANNNNTTC 1 cut(s) 198
AspLEI GCGC 1 cut(s) 273
AspS9I GGNCC 2 cut(s) 6, 452
AsuC2I CCSGG 2 cut(s) 204, 581
AsuHPI GGTGA 4 cut(s) 203, 506, 725, 734
BbsI GAAGAC 1 cut(s) 594
Bbv12I GWGCWC 1 cut(s) 783
BbvI GCAGC 3 cut(s) 627, 695, 717
BccI CCATC 2 cut(s) 278, 282
BcgI CGANNNNNNTGC 2 cut(s) 332, 366
BciT130I CCWGG 2 cut(s) 165, 189
BciVI GTATCC 1 cut(s) 221
BclI TGATCA 2 cut(s) 385, 724
BcnI CCSGG 2 cut(s) 204, 581
BfaI CTAG 2 cut(s) 380, 765
BfuAI ACCTGC 1 cut(s) 43
BfuI GTATCC 1 cut(s) 221
BglII AGATCT 1 cut(s) 572
BisI GCNGC 3 cut(s) 641, 706, 709
BlsI GCNGC 3 cut(s) 642, 707, 710
Bme1390I CCNGG 4 cut(s) 165, 189, 204, 581
BmgT120I GGNCC 2 cut(s) 6, 452
BmrFI CCNGG 4 cut(s) 165, 189, 204, 581
BmsI GCATC 2 cut(s) 197, 340
BpiI GAAGAC 1 cut(s) 594
BplI GAGNNNNNCTC 2 cut(s) 45, 77
BpmI CTGGAG 1 cut(s) 866
BpuEI CTTGAG 1 cut(s) 808
BpuMI CCSGG 2 cut(s) 204, 581
BsaBI GATNNNNATC 1 cut(s) 153
BsaWI WCCGGW 2 cut(s) 106, 280
BsaXI ACNNNNNCTCC 2 cut(s) 597, 627
Bsc4I CCNNNNNNNGG 3 cut(s) 164, 238, 280
Bse118I RCCGGY 1 cut(s) 106
Bse3DI GCAATG 1 cut(s) 158
Bse8I GATNNNNATC 1 cut(s) 153
BseAI TCCGGA 1 cut(s) 280
BseBI CCWGG 2 cut(s) 165, 189
BseGI GGATG 3 cut(s) 212, 277, 289
BseJI GATNNNNATC 1 cut(s) 153
BseLI CCNNNNNNNGG 3 cut(s) 164, 238, 280
BseMI GCAATG 1 cut(s) 158
BseMII CTCAG 2 cut(s) 98, 779
BseRI GAGGAG 2 cut(s) 583, 863
BseXI GCAGC 3 cut(s) 627, 695, 717
BseYI CCCAGC 1 cut(s) 77
BsgI GTGCAG 1 cut(s) 626
BshFI GGCC 2 cut(s) 8, 453
BshTI ACCGGT 1 cut(s) 106
BsiHKAI GWGCWC 1 cut(s) 783
BsiSI CCGG 5 cut(s) 49, 107, 203, 281, 580
BslI CCNNNNNNNGG 3 cut(s) 164, 238, 280
BsmI GAATGC 1 cut(s) 88
BsnI GGCC 2 cut(s) 8, 453
Bsp1286I GDGCHC 1 cut(s) 783
Bsp13I TCCGGA 1 cut(s) 280
Bsp143I GATC 7 cut(s) 154, 287, 385, 441, 572, 724, 791
BspACI CCGC 1 cut(s) 711
BspANI GGCC 2 cut(s) 8, 453
BspCNI CTCAG 2 cut(s) 97, 780
BspEI TCCGGA 1 cut(s) 280
BspHI TCATGA 1 cut(s) 684
BspMI ACCTGC 1 cut(s) 43
BspPI GGATC 2 cut(s) 149, 295
BspQI GCTCTTC 1 cut(s) 204
BsrDI GCAATG 1 cut(s) 158
BsrFI RCCGGY 1 cut(s) 106
BssAI RCCGGY 1 cut(s) 106
BssMI GATC 7 cut(s) 154, 287, 385, 441, 572, 724, 791
Bst2UI CCWGG 2 cut(s) 165, 189
Bst4CI ACNGT 1 cut(s) 649
Bst6I CTCTTC 1 cut(s) 204
BstAPI GCANNNNNTGC 1 cut(s) 359
BstDEI CTNAG 3 cut(s) 84, 237, 788
BstENI CCTNNNNNAGG 1 cut(s) 236
BstF5I GGATG 3 cut(s) 212, 277, 289
BstHHI GCGC 1 cut(s) 273
BstKTI GATC 7 cut(s) 157, 290, 388, 444, 575, 727, 794
BstMBI GATC 7 cut(s) 154, 287, 385, 441, 572, 724, 791
BstMWI GCNNNNNNNGC 1 cut(s) 359
BstNI CCWGG 2 cut(s) 165, 189
BstNSI RCATGY 1 cut(s) 225
BstSCI CCNGG 4 cut(s) 163, 187, 202, 579
BstV1I GCAGC 3 cut(s) 627, 695, 717
BstV2I GAAGAC 1 cut(s) 594
BstX2I RGATCY 1 cut(s) 572
BstXI CCANNNNNNTGG 1 cut(s) 224
BstYI RGATCY 1 cut(s) 572
BsuI GTATCC 1 cut(s) 221
BsuRI GGCC 2 cut(s) 8, 453
BtsCI GGATG 3 cut(s) 212, 277, 289
BtsIMutI CAGTG 1 cut(s) 269
BveI ACCTGC 1 cut(s) 43
CciI TCATGA 1 cut(s) 684
CfoI GCGC 1 cut(s) 273
Cfr10I RCCGGY 1 cut(s) 106
Cfr13I GGNCC 2 cut(s) 6, 452
CspAI ACCGGT 1 cut(s) 106
CviAII CATG 2 cut(s) 222, 685
DdeI CTNAG 3 cut(s) 84, 237, 788
DpnI GATC 7 cut(s) 156, 289, 387, 443, 574, 726, 793
DpnII GATC 7 cut(s) 154, 287, 385, 441, 572, 724, 791
Eam1104I CTCTTC 1 cut(s) 204
EarI CTCTTC 1 cut(s) 204
EcoNI CCTNNNNNAGG 1 cut(s) 236
EcoRI GAATTC 1 cut(s) 680
EcoRII CCWGG 2 cut(s) 163, 187
EcoT22I ATGCAT 1 cut(s) 355
FaeI CATG 2 cut(s) 225, 688
FaiI YATR 7 cut(s) 170, 223, 355, 554, 617, 686, 785
FatI CATG 2 cut(s) 221, 684
FbaI TGATCA 2 cut(s) 385, 724
Fnu4HI GCNGC 3 cut(s) 641, 706, 709
FokI GGATG 3 cut(s) 219, 264, 296
Fsp4HI GCNGC 3 cut(s) 641, 706, 709
FspBI CTAG 2 cut(s) 380, 765
GlaI GCGC 1 cut(s) 272
GluI GCNGC 3 cut(s) 641, 706, 709
GsaI CCCAGC 1 cut(s) 81
GsuI CTGGAG 1 cut(s) 866
HaeIII GGCC 2 cut(s) 8, 453
HapII CCGG 5 cut(s) 49, 107, 203, 281, 580
HhaI GCGC 1 cut(s) 273
Hin1II CATG 2 cut(s) 225, 688
Hin6I GCGC 1 cut(s) 271
HinP1I GCGC 1 cut(s) 271
HinfI GANTC 1 cut(s) 658
HpaII CCGG 5 cut(s) 49, 107, 203, 281, 580
HphI GGTGA 4 cut(s) 203, 506, 725, 734
Hpy188III TCNNGA 7 cut(s) 281, 380, 666, 685, 765, 884, 897
HpyAV CCTTC 4 cut(s) 135, 672, 824, 847
HpyCH4III ACNGT 1 cut(s) 649
HpyCH4V TGCA 5 cut(s) 20, 255, 353, 463, 643
HpyF10VI GCNNNNNNNGC 1 cut(s) 359
HpyF3I CTNAG 3 cut(s) 84, 237, 788
Hsp92II CATG 2 cut(s) 225, 688
HspAI GCGC 1 cut(s) 271
Kpn2I TCCGGA 1 cut(s) 280
Ksp22I TGATCA 2 cut(s) 385, 724
Kzo9I GATC 7 cut(s) 154, 287, 385, 441, 572, 724, 791
LguI GCTCTTC 1 cut(s) 204
LmnI GCTCC 1 cut(s) 242
Lsp1109I GCAGC 3 cut(s) 627, 695, 717
LweI GCATC 2 cut(s) 197, 340
MaeI CTAG 2 cut(s) 380, 765
MaeIII GTNAC 2 cut(s) 65, 692
MalI GATC 7 cut(s) 156, 289, 387, 443, 574, 726, 793
MboI GATC 7 cut(s) 154, 287, 385, 441, 572, 724, 791
MboII GAAGA 3 cut(s) 158, 191, 599
MflI RGATCY 1 cut(s) 572
MhlI GDGCHC 1 cut(s) 783
MluCI AATT 5 cut(s) 70, 183, 680, 737, 753
MnlI CCTC 7 cut(s) 54, 71, 188, 387, 484, 561, 841
Mph1103I ATGCAT 1 cut(s) 355
MroI TCCGGA 1 cut(s) 280
MroXI GAANNNNTTC 1 cut(s) 198
MseI TTAA 4 cut(s) 303, 534, 564, 740
MslI CAYNNNNRTG 1 cut(s) 282
MspA1I CMGCKG 1 cut(s) 708
MspI CCGG 5 cut(s) 49, 107, 203, 281, 580
MspR9I CCNGG 4 cut(s) 165, 189, 204, 581
Mva1269I GAATGC 1 cut(s) 88
MvaI CCWGG 2 cut(s) 165, 189
MwoI GCNNNNNNNGC 1 cut(s) 359
NciI CCSGG 2 cut(s) 204, 581
NdeII GATC 7 cut(s) 154, 287, 385, 441, 572, 724, 791
NlaIII CATG 2 cut(s) 225, 688
NmuCI GTSAC 1 cut(s) 692
NsiI ATGCAT 1 cut(s) 355
NspI RCATGY 1 cut(s) 225
PagI TCATGA 1 cut(s) 684
PciSI GCTCTTC 1 cut(s) 204
PctI GAATGC 1 cut(s) 88
PdmI GAANNNNTTC 1 cut(s) 198
PfeI GAWTC 1 cut(s) 658
PflFI GACNNNGTC 1 cut(s) 593
PfoI TCCNGGA 1 cut(s) 202
PinAI ACCGGT 1 cut(s) 106
PkrI GCNGC 3 cut(s) 642, 707, 710
PshBI ATTAAT 2 cut(s) 303, 740
Psp6I CCWGG 2 cut(s) 163, 187
PspFI CCCAGC 1 cut(s) 77
PspGI CCWGG 2 cut(s) 163, 187
PspPI GGNCC 2 cut(s) 6, 452
PsuI RGATCY 1 cut(s) 572
PsyI GACNNNGTC 1 cut(s) 593
PvuII CAGCTG 1 cut(s) 708
RseI CAYNNNNRTG 1 cut(s) 282
SapI GCTCTTC 1 cut(s) 204
SaqAI TTAA 4 cut(s) 303, 534, 564, 740
SatI GCNGC 3 cut(s) 641, 706, 709
Sau3AI GATC 7 cut(s) 154, 287, 385, 441, 572, 724, 791
Sau96I GGNCC 2 cut(s) 6, 452
ScrFI CCNGG 4 cut(s) 165, 189, 204, 581
SduI GDGCHC 1 cut(s) 783
SfaNI GCATC 2 cut(s) 197, 340
SmiMI CAYNNNNRTG 1 cut(s) 282
SmlI CTYRAG 1 cut(s) 823
SmoI CTYRAG 1 cut(s) 823
Sse9I AATT 5 cut(s) 70, 183, 680, 737, 753
SsiI CCGC 1 cut(s) 711
SspMI CTAG 2 cut(s) 380, 765
StyD4I CCNGG 4 cut(s) 163, 187, 202, 579
TaaI ACNGT 1 cut(s) 649
TaqI TCGA 4 cut(s) 489, 508, 526, 656
TasI AATT 5 cut(s) 70, 183, 680, 737, 753
TfiI GAWTC 1 cut(s) 658
Tru1I TTAA 4 cut(s) 303, 534, 564, 740
Tru9I TTAA 4 cut(s) 303, 534, 564, 740
TscAI CASTG 1 cut(s) 269
TseFI GTSAC 1 cut(s) 692
TseI GCWGC 3 cut(s) 640, 705, 708
Tsp45I GTSAC 1 cut(s) 692
TspDTI ATGAA 5 cut(s) 117, 159, 284, 506, 673
TspRI CASTG 1 cut(s) 269
Tth111I GACNNNGTC 1 cut(s) 593
VspI ATTAAT 2 cut(s) 303, 740
XagI CCTNNNNNAGG 1 cut(s) 236
XapI RAATTY 2 cut(s) 183, 680
XbaI TCTAGA 2 cut(s) 379, 764
XceI RCATGY 1 cut(s) 225
XcmI CCANNNNNNNNNTGG 1 cut(s) 281
XmnI GAANNNNTTC 1 cut(s) 198
XspI CTAG 2 cut(s) 380, 765
Zsp2I ATGCAT 1 cut(s) 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.