Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0001142

Physical Location & Seq

Genomic Coordinates Reverse (-)

27766756 .. 27767983

Gene Structure 1228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1186900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGTTTGAAGAGCCTCTGCCCAGTATAGAGTGCCTCGAAATCTCAGGGAAAGCTTTTCCGGGACAAGAACTTGTAGTGTGCAGATACGGTGTTAATGGAACAACCGTATGCTTTTTTGATTTGGGATGCTATGTTGACGACGGATCTGTTTCTTATATTGATGGCGCAAAGAGTCCAAATTATATTGTTTCTGCTGCTGATGTTGATACGTACCTTGGTGTTGAAGTCCAGCCTATGGATGATAGGGATCGCCGGGAAAAGGTTGTTACTGCGGCCTTAGCTAATGACTACAAGGTCACTTATGAAAAGAAGGGTAAAACAAGATTATCCTTCTCTCTTTTTTTCTTTCTTTTAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

120

Amino Acids

13.27

Weight (kDa)

4.67

Isoelectric Point (pI)

25.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001142)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08440 AT5G08440 AT5G08440 AT5G23490 AT5G23490 AT5G23490 AT5G23490 AT5G23510 AT5G23510 AT5G23510
fragaria_vesca	FvH4_1g25960 FvH4_1g25960 FvH4_1g25960 FvH4_1g25960 FvH4_1g25960 FvH4_1g25960 FvH4_3g21410 FvH4_7g23540
malus_domestica	MD03G1185400.v1.1 MD04G1186900.v1.1 MD11G1230900.v1.1
prunus_persica	Prupe.4G196300_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1
pyrus_communis	pycom03g16520 pycom03g16530
rosa_chinensis	RchiOBHm_Chr1g0368691 RchiOBHm_Chr3g0485101 RchiOBHm_Chr5g0036791
rosa_laevigata	RLG00000023166 RLG00000027197 RLG00000033721
rosa_multiflora	Rmu_co8159396.1_g000001 Rmu_sc0000399.1_g000002 Rmu_sc0006040.1_g000006 Rmu_sc0006040.1_g000007
rosa_roxburghii	Rroxscaffold_1G00044160 Rroxscaffold_4G00288350 Rroxscaffold_6G00397190
rosa_rugosa	Rorug01G0343700 Rorug03G0216200 Rorug03G0216300
rosa_samantha	Rh3AG266300 Rh3BG301700 Rh3CG300000 Rh3DG295800 Rh5AG250300 Rh5BG252000 Rh5CG284000 Rh5DG260300
rosa_wichuraiana	Rw5G023020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	293
AccB7I	CCANNNNNTGG	1 cut(s)	235
AciI	CCGC	1 cut(s)	272
AclWI	GGATC	2 cut(s)	151, 255
AfaI	GTAC	1 cut(s)	212
AfiI	CCNNNNNNNGG	2 cut(s)	235, 259
AgsI	TTSAA	2 cut(s)	8, 224
AluBI	AGCT	2 cut(s)	53, 281
AluI	AGCT	2 cut(s)	53, 281
AlwI	GGATC	2 cut(s)	151, 255
AoxI	GGCC	1 cut(s)	273
ApeKI	GCWGC	1 cut(s)	194
AspLEI	GCGC	1 cut(s)	167
AsuC2I	CCSGG	2 cut(s)	60, 254
BbvI	GCAGC	1 cut(s)	181
BccI	CCATC	1 cut(s)	155
BcnI	CCSGG	2 cut(s)	60, 254
BisI	GCNGC	2 cut(s)	195, 273
BlsI	GCNGC	2 cut(s)	196, 274
Bme1390I	CCNGG	2 cut(s)	60, 254
BmrFI	CCNGG	2 cut(s)	60, 254
BmrI	ACTGGG	1 cut(s)	15
BmsI	GCATC	1 cut(s)	116
BmuI	ACTGGG	1 cut(s)	15
Bpu10I	CCTNAGC	1 cut(s)	277
BpuMI	CCSGG	2 cut(s)	60, 254
BsaAI	YACGTR	1 cut(s)	210
BsaBI	GATNNNNATC	1 cut(s)	246
BsaJI	CCNNGG	1 cut(s)	214
Bsc4I	CCNNNNNNNGG	2 cut(s)	235, 259
Bse1I	ACTGG	1 cut(s)	21
Bse8I	GATNNNNATC	1 cut(s)	246
BseDI	CCNNGG	1 cut(s)	214
BseGI	GGATG	2 cut(s)	131, 244
BseJI	GATNNNNATC	1 cut(s)	246
BseLI	CCNNNNNNNGG	2 cut(s)	235, 259
BseMII	CTCAG	1 cut(s)	57
BseNI	ACTGG	1 cut(s)	21
BseXI	GCAGC	1 cut(s)	181
BsgI	GTGCAG	1 cut(s)	100
BshFI	GGCC	1 cut(s)	275
BsiSI	CCGG	2 cut(s)	59, 253
BslFI	GGGAC	1 cut(s)	75
BslI	CCNNNNNNNGG	2 cut(s)	235, 259
BsmFI	GGGAC	1 cut(s)	75
BsnI	GGCC	1 cut(s)	275
Bsp143I	GATC	2 cut(s)	143, 247
BspACI	CCGC	1 cut(s)	272
BspANI	GGCC	1 cut(s)	275
BspCNI	CTCAG	1 cut(s)	56
BspPI	GGATC	2 cut(s)	151, 255
BspQI	GCTCTTC	1 cut(s)	3
BsrI	ACTGG	1 cut(s)	21
BssECI	CCNNGG	1 cut(s)	214
BssMI	GATC	2 cut(s)	143, 247
BssT1I	CCWWGG	1 cut(s)	214
Bst4CI	ACNGT	2 cut(s)	89, 106
Bst6I	CTCTTC	1 cut(s)	3
BstBAI	YACGTR	1 cut(s)	210
BstDEI	CTNAG	2 cut(s)	43, 277
BstF5I	GGATG	2 cut(s)	131, 244
BstHHI	GCGC	1 cut(s)	167
BstKTI	GATC	2 cut(s)	146, 250
BstMBI	GATC	2 cut(s)	143, 247
BstMWI	GCNNNNNNNGC	1 cut(s)	278
BstSCI	CCNGG	2 cut(s)	58, 252
BstSNI	TACGTA	1 cut(s)	210
BstV1I	GCAGC	1 cut(s)	181
BstX2I	RGATCY	1 cut(s)	143
BstYI	RGATCY	1 cut(s)	143
BsuRI	GGCC	1 cut(s)	275
BtsCI	GGATG	2 cut(s)	131, 244
CfoI	GCGC	1 cut(s)	167
Csp6I	GTAC	1 cut(s)	211
CviJI	RGCY	5 cut(s)	13, 53, 232, 275, 281
CviKI_1	RGCY	5 cut(s)	13, 53, 232, 275, 281
CviQI	GTAC	1 cut(s)	211
DdeI	CTNAG	2 cut(s)	43, 277
DpnI	GATC	2 cut(s)	145, 249
DpnII	GATC	2 cut(s)	143, 247
DraI	TTTAAA	1 cut(s)	354
DrdI	GACNNNNNNGTC	1 cut(s)	293
DseDI	GACNNNNNNGTC	1 cut(s)	293
Eam1104I	CTCTTC	1 cut(s)	3
EarI	CTCTTC	1 cut(s)	3
Eco105I	TACGTA	1 cut(s)	210
Eco130I	CCWWGG	1 cut(s)	214
EcoT14I	CCWWGG	1 cut(s)	214
ErhI	CCWWGG	1 cut(s)	214
FaiI	YATR	7 cut(s)	26, 109, 132, 156, 183, 236, 303
FaqI	GGGAC	1 cut(s)	75
Fnu4HI	GCNGC	2 cut(s)	195, 273
FokI	GGATG	2 cut(s)	138, 251
Fsp4HI	GCNGC	2 cut(s)	195, 273
GlaI	GCGC	1 cut(s)	166
GluI	GCNGC	2 cut(s)	195, 273
HaeIII	GGCC	1 cut(s)	275
HapII	CCGG	2 cut(s)	59, 253
HhaI	GCGC	1 cut(s)	167
Hin6I	GCGC	1 cut(s)	165
HinP1I	GCGC	1 cut(s)	165
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HindIII	AAGCTT	1 cut(s)	51
HinfI	GANTC	1 cut(s)	172
HpaII	CCGG	2 cut(s)	59, 253
Hpy166II	GTNNAC	1 cut(s)	136
Hpy8I	GTNNAC	1 cut(s)	136
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	2 cut(s)	304, 340
HpyCH4III	ACNGT	2 cut(s)	89, 106
HpyCH4IV	ACGT	1 cut(s)	209
HpyCH4V	TGCA	1 cut(s)	81
HpyF10VI	GCNNNNNNNGC	1 cut(s)	278
HpyF3I	CTNAG	2 cut(s)	43, 277
HpySE526I	ACGT	1 cut(s)	209
HspAI	GCGC	1 cut(s)	165
Kzo9I	GATC	2 cut(s)	143, 247
LguI	GCTCTTC	1 cut(s)	3
LpnPI	CCDG	5 cut(s)	30, 34, 72, 242, 266
Lsp1109I	GCAGC	1 cut(s)	181
LweI	GCATC	1 cut(s)	116
MaeII	ACGT	1 cut(s)	209
MaeIII	GTNAC	2 cut(s)	265, 295
MalI	GATC	2 cut(s)	145, 249
MboI	GATC	2 cut(s)	143, 247
MboII	GAAGA	1 cut(s)	20
MflI	RGATCY	1 cut(s)	143
MluCI	AATT	1 cut(s)	178
MlyI	GAGTC	1 cut(s)	181
MnlI	CCTC	2 cut(s)	24, 44
MseI	TTAA	2 cut(s)	93, 353
MspI	CCGG	2 cut(s)	59, 253
MspR9I	CCNGG	2 cut(s)	60, 254
MwoI	GCNNNNNNNGC	1 cut(s)	278
NciI	CCSGG	2 cut(s)	60, 254
NdeII	GATC	2 cut(s)	143, 247
NmuCI	GTSAC	1 cut(s)	295
PciSI	GCTCTTC	1 cut(s)	3
PflMI	CCANNNNNTGG	1 cut(s)	235
PfoI	TCCNGGA	1 cut(s)	58
PkrI	GCNGC	2 cut(s)	196, 274
PleI	GAGTC	1 cut(s)	180
PpsI	GAGTC	1 cut(s)	180
Ppu21I	YACGTR	1 cut(s)	210
PsuI	RGATCY	1 cut(s)	143
RsaI	GTAC	1 cut(s)	212
RsaNI	GTAC	1 cut(s)	211
SapI	GCTCTTC	1 cut(s)	3
SaqAI	TTAA	2 cut(s)	93, 353
SatI	GCNGC	2 cut(s)	195, 273
Sau3AI	GATC	2 cut(s)	143, 247
SchI	GAGTC	1 cut(s)	181
ScrFI	CCNGG	2 cut(s)	60, 254
SetI	ASST	6 cut(s)	55, 212, 216, 264, 283, 297
SfaNI	GCATC	1 cut(s)	116
SnaBI	TACGTA	1 cut(s)	210
Sse9I	AATT	1 cut(s)	178
SsiI	CCGC	1 cut(s)	272
StyD4I	CCNGG	2 cut(s)	58, 252
StyI	CCWWGG	1 cut(s)	214
TaaI	ACNGT	2 cut(s)	89, 106
TaiI	ACGT	1 cut(s)	212
TaqI	TCGA	1 cut(s)	36
TasI	AATT	1 cut(s)	178
TauI	GCSGC	1 cut(s)	275
Tru1I	TTAA	2 cut(s)	93, 353
Tru9I	TTAA	2 cut(s)	93, 353
TseFI	GTSAC	1 cut(s)	295
TseI	GCWGC	1 cut(s)	194
Tsp45I	GTSAC	1 cut(s)	295
TspDTI	ATGAA	1 cut(s)	318
TspGWI	ACGGA	1 cut(s)	156
Van91I	CCANNNNNTGG	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.