Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0001142

Physical Location & Seq

Genomic Coordinates Forward (+)

17697858 .. 17698601

Gene Structure 744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g16530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGAAGAGGGTTCTTCATCGTATTCAGAGGCTGCAGATGATGACCCATTACCAGCTATAGATGGCCTTCAAATATCGGGTGAAGCTTTTCCAGGACACGAGCTTCAAGCATGCGGATACTCCATCAACGGAACAACCAGCTGCAACTTTGAGTGGGTAAGACATCTCCAAGACGGATCAGTTAACTACATTGACGGAGCAAAGCAACCGAACTACCTTGTAACTGCTGATGATGTGGATTCATACCTTGCTATTGAAGTTCAGCCTCTGGACAACAGGAAGCGAAAGGGGGGGCTCGAAAAGGTGTACGCCAACGGCCACAAGAAGATAACTTGCGACCCCGAAGTGCAATCTCAGATAGAGAAGATTCTTCACAAGGGCCATGCCTCATTCAAAATATTCCTCTTCACCGGGTACATCGACATATGGGAGCCTGCAACACTGGCCATAAAGAGGGGAGCTTACAGCATAAAGGGCAGTGGAGGCCCGAGTGGAAGCGGAGTTGTAGTTGCAGAGAAGTTTTCGCCGAACACAATTGTCACTATCCCATATGGAAGTACAAACGAATTCATAATCCATAGCGGCTCCGATAACGGAGGTGAGTATGTGTTGAAAACGGAAGATGAGAGCTGTTCTAGAGATACAGTTGTGCTTACATTGAGATTGTTTATTCATAGGGCTGATGAGAGAAAGACTACAAAGAAAGGGAAAATAGGGACTTACTTTTTCAACAAGTATTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

248

Amino Acids

27.11

Weight (kDa)

5.52

Isoelectric Point (pI)

37.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IG_AIR9	PF23197	22 - 97	6.9e-07	AIR9 A9 domain
DUF7046	PF23080	137 - 235	3.1e-27	Domain of unknown function (DUF7046)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001142)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08440 AT5G08440 AT5G08440 AT5G23490 AT5G23490 AT5G23490 AT5G23490 AT5G23510 AT5G23510 AT5G23510
fragaria_vesca	FvH4_1g25960 FvH4_1g25960 FvH4_1g25960 FvH4_1g25960 FvH4_1g25960 FvH4_1g25960 FvH4_3g21410 FvH4_7g23540
malus_domestica	MD03G1185400.v1.1 MD04G1186900.v1.1 MD11G1230900.v1.1
prunus_persica	Prupe.4G196300_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1
pyrus_communis	pycom03g16520 pycom03g16530
rosa_chinensis	RchiOBHm_Chr1g0368691 RchiOBHm_Chr3g0485101 RchiOBHm_Chr5g0036791
rosa_laevigata	RLG00000023166 RLG00000027197 RLG00000033721
rosa_multiflora	Rmu_co8159396.1_g000001 Rmu_sc0000399.1_g000002 Rmu_sc0006040.1_g000006 Rmu_sc0006040.1_g000007
rosa_roxburghii	Rroxscaffold_1G00044160 Rroxscaffold_4G00288350 Rroxscaffold_6G00397190
rosa_rugosa	Rorug01G0343700 Rorug03G0216200 Rorug03G0216300
rosa_samantha	Rh3AG266300 Rh3BG301700 Rh3CG300000 Rh3DG295800 Rh5AG250300 Rh5BG252000 Rh5CG284000 Rh5DG260300
rosa_wichuraiana	Rw5G023020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	114, 498, 582
AclWI	GGATC	1 cut(s)	184
AcoI	YGGCCR	2 cut(s)	316, 444
AcsI	RAATTY	1 cut(s)	566
AfaI	GTAC	3 cut(s)	308, 416, 559
AfiI	CCNNNNNNNGG	1 cut(s)	453
AgsI	TTSAA	6 cut(s)	71, 107, 257, 394, 613, 730
AjnI	CCWGG	1 cut(s)	91
AluBI	AGCT	6 cut(s)	56, 86, 103, 141, 461, 630
AluI	AGCT	6 cut(s)	56, 86, 103, 141, 461, 630
AlwI	GGATC	1 cut(s)	184
AlwNI	CAGNNNCTG	2 cut(s)	32, 268
Ama87I	CYCGRG	1 cut(s)	487
AoxI	GGCC	5 cut(s)	64, 316, 379, 444, 484
ApeKI	GCWGC	2 cut(s)	32, 141
ApoI	RAATTY	1 cut(s)	566
Asp700I	GAANNNNTTC	1 cut(s)	87
AspS9I	GGNCC	2 cut(s)	379, 485
AsuC2I	CCSGG	1 cut(s)	412
AsuHPI	GGTGA	3 cut(s)	92, 400, 611
AvaI	CYCGRG	1 cut(s)	487
BaeI	ACNNNNGTAYC	2 cut(s)	633, 666
BalI	TGGCCA	1 cut(s)	446
BanII	GRGCYC	1 cut(s)	297
BauI	CACGAG	1 cut(s)	98
BbvI	GCAGC	2 cut(s)	19, 128
BccI	CCATC	2 cut(s)	56, 131
BceAI	ACGGC	1 cut(s)	331
BciT130I	CCWGG	1 cut(s)	93
BciVI	GTATCC	1 cut(s)	110
BcnI	CCSGG	1 cut(s)	412
BfaI	CTAG	1 cut(s)	636
BfmI	CTRYAG	2 cut(s)	33, 57
BfuI	GTATCC	1 cut(s)	110
BisI	GCNGC	3 cut(s)	33, 142, 583
BlsI	GCNGC	3 cut(s)	34, 143, 584
Bme1390I	CCNGG	2 cut(s)	93, 412
BmeT110I	CYCGRG	1 cut(s)	487
BmgT120I	GGNCC	2 cut(s)	379, 485
BmiI	GGNNCC	2 cut(s)	432, 586
BmrFI	CCNGG	2 cut(s)	93, 412
BpuMI	CCSGG	1 cut(s)	412
BsaXI	ACNNNNNCTCC	2 cut(s)	492, 522
Bsc4I	CCNNNNNNNGG	1 cut(s)	453
Bse1I	ACTGG	1 cut(s)	447
BseBI	CCWGG	1 cut(s)	93
BseLI	CCNNNNNNNGG	1 cut(s)	453
BseMII	CTCAG	1 cut(s)	368
BseNI	ACTGG	1 cut(s)	447
BseXI	GCAGC	2 cut(s)	19, 128
BshFI	GGCC	5 cut(s)	66, 318, 381, 446, 486
BsiHKCI	CYCGRG	1 cut(s)	487
BsiSI	CCGG	1 cut(s)	411
BslFI	GGGAC	1 cut(s)	730
BslI	CCNNNNNNNGG	1 cut(s)	453
BsmFI	GGGAC	1 cut(s)	730
BsnI	GGCC	5 cut(s)	66, 318, 381, 446, 486
BsoBI	CYCGRG	1 cut(s)	487
Bsp1286I	GDGCHC	1 cut(s)	297
Bsp143I	GATC	1 cut(s)	176
BspACI	CCGC	3 cut(s)	114, 498, 582
BspANI	GGCC	5 cut(s)	66, 318, 381, 446, 486
BspCNI	CTCAG	1 cut(s)	367
BspLI	GGNNCC	2 cut(s)	432, 586
BspMAI	CTGCAG	1 cut(s)	37
BspPI	GGATC	1 cut(s)	184
BsrI	ACTGG	1 cut(s)	447
BssMI	GATC	1 cut(s)	176
BssSI	CACGAG	1 cut(s)	98
Bst2BI	CACGAG	1 cut(s)	98
Bst2UI	CCWGG	1 cut(s)	93
Bst4CI	ACNGT	1 cut(s)	646
Bst6I	CTCTTC	1 cut(s)	410
BstC8I	GCNNGC	2 cut(s)	112, 435
BstDEI	CTNAG	1 cut(s)	354
BstKTI	GATC	1 cut(s)	179
BstMBI	GATC	1 cut(s)	176
BstMWI	GCNNNNNNNGC	3 cut(s)	443, 474, 483
BstNI	CCWGG	1 cut(s)	93
BstNSI	RCATGY	1 cut(s)	114
BstSCI	CCNGG	2 cut(s)	91, 410
BstSFI	CTRYAG	2 cut(s)	33, 57
BstV1I	GCAGC	2 cut(s)	19, 128
BsuI	GTATCC	1 cut(s)	110
BsuRI	GGCC	5 cut(s)	66, 318, 381, 446, 486
BtsI	GCAGTG	1 cut(s)	484
BtsIMutI	CAGTG	2 cut(s)	440, 484
Cac8I	GCNNGC	2 cut(s)	112, 435
CaiI	CAGNNNCTG	2 cut(s)	32, 268
Cfr13I	GGNCC	2 cut(s)	379, 485
Csp6I	GTAC	3 cut(s)	307, 415, 558
CviAII	CATG	2 cut(s)	111, 383
CviQI	GTAC	3 cut(s)	307, 415, 558
DdeI	CTNAG	1 cut(s)	354
DpnI	GATC	1 cut(s)	178
DpnII	GATC	1 cut(s)	176
EaeI	YGGCCR	2 cut(s)	316, 444
Eam1104I	CTCTTC	1 cut(s)	410
EarI	CTCTTC	1 cut(s)	410
Eco24I	GRGCYC	1 cut(s)	297
Eco88I	CYCGRG	1 cut(s)	487
EcoRI	GAATTC	1 cut(s)	566
EcoRII	CCWGG	1 cut(s)	91
EcoT38I	GRGCYC	1 cut(s)	297
FaeI	CATG	2 cut(s)	114, 386
FaqI	GGGAC	1 cut(s)	730
FatI	CATG	2 cut(s)	110, 382
FauNDI	CATATG	2 cut(s)	425, 550
Fnu4HI	GCNGC	3 cut(s)	33, 142, 583
FriOI	GRGCYC	1 cut(s)	297
Fsp4HI	GCNGC	3 cut(s)	33, 142, 583
FspBI	CTAG	1 cut(s)	636
GluI	GCNGC	3 cut(s)	33, 142, 583
HaeIII	GGCC	5 cut(s)	66, 318, 381, 446, 486
HapII	CCGG	1 cut(s)	411
Hin1II	CATG	2 cut(s)	114, 386
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HindIII	AAGCTT	1 cut(s)	84
HinfI	GANTC	2 cut(s)	239, 367
HpaI	GTTAAC	1 cut(s)	184
HpaII	CCGG	1 cut(s)	411
HphI	GGTGA	3 cut(s)	92, 400, 611
Hpy166II	GTNNAC	2 cut(s)	184, 307
Hpy188I	TCNGA	3 cut(s)	28, 357, 589
Hpy188III	TCNNGA	2 cut(s)	269, 636
Hpy8I	GTNNAC	2 cut(s)	184, 307
HpyAV	CCTTC	1 cut(s)	77
HpyCH4III	ACNGT	1 cut(s)	646
HpyCH4V	TGCA	5 cut(s)	35, 144, 349, 437, 512
HpyF10VI	GCNNNNNNNGC	3 cut(s)	443, 474, 483
HpyF3I	CTNAG	1 cut(s)	354
Hsp92II	CATG	2 cut(s)	114, 386
KspAI	GTTAAC	1 cut(s)	184
Kzo9I	GATC	1 cut(s)	176
LmnI	GCTCC	4 cut(s)	197, 430, 458, 590
LpnPI	CCDG	9 cut(s)	66, 78, 105, 151, 254, 262, 424, 428, 447
Lsp1109I	GCAGC	2 cut(s)	19, 128
MaeI	CTAG	1 cut(s)	636
MaeIII	GTNAC	2 cut(s)	220, 538
MalI	GATC	1 cut(s)	178
MboI	GATC	1 cut(s)	176
MboII	GAAGA	7 cut(s)	6, 17, 337, 362, 376, 397, 632
MfeI	CAATTG	1 cut(s)	534
MhlI	GDGCHC	1 cut(s)	297
MlsI	TGGCCA	1 cut(s)	446
MluCI	AATT	2 cut(s)	534, 566
MluNI	TGGCCA	1 cut(s)	446
MnlI	CCTC	7 cut(s)	22, 276, 397, 413, 447, 476, 590
Mox20I	TGGCCA	1 cut(s)	446
MroXI	GAANNNNTTC	1 cut(s)	87
MscI	TGGCCA	1 cut(s)	446
MseI	TTAA	1 cut(s)	183
Msp20I	TGGCCA	1 cut(s)	446
MspA1I	CMGCKG	1 cut(s)	141
MspI	CCGG	1 cut(s)	411
MspR9I	CCNGG	2 cut(s)	93, 412
MunI	CAATTG	1 cut(s)	534
MvaI	CCWGG	1 cut(s)	93
MwoI	GCNNNNNNNGC	3 cut(s)	443, 474, 483
NciI	CCSGG	1 cut(s)	412
NdeI	CATATG	2 cut(s)	425, 550
NdeII	GATC	1 cut(s)	176
NlaIII	CATG	2 cut(s)	114, 386
NlaIV	GGNNCC	2 cut(s)	432, 586
NmuCI	GTSAC	1 cut(s)	538
NspI	RCATGY	1 cut(s)	114
PaeI	GCATGC	1 cut(s)	114
PdmI	GAANNNNTTC	1 cut(s)	87
PfeI	GAWTC	2 cut(s)	239, 367
PfoI	TCCNGGA	1 cut(s)	91
PkrI	GCNGC	3 cut(s)	34, 143, 584
Psp6I	CCWGG	1 cut(s)	91
PspGI	CCWGG	1 cut(s)	91
PspN4I	GGNNCC	2 cut(s)	432, 586
PspPI	GGNCC	2 cut(s)	379, 485
PstI	CTGCAG	1 cut(s)	37
PstNI	CAGNNNCTG	2 cut(s)	32, 268
PvuII	CAGCTG	1 cut(s)	141
RsaI	GTAC	3 cut(s)	308, 416, 559
RsaNI	GTAC	3 cut(s)	307, 415, 558
SaqAI	TTAA	1 cut(s)	183
SatI	GCNGC	3 cut(s)	33, 142, 583
Sau3AI	GATC	1 cut(s)	176
Sau96I	GGNCC	2 cut(s)	379, 485
ScrFI	CCNGG	2 cut(s)	93, 412
SduI	GDGCHC	1 cut(s)	297
SfcI	CTRYAG	2 cut(s)	33, 57
SphI	GCATGC	1 cut(s)	114
Sse9I	AATT	2 cut(s)	534, 566
SsiI	CCGC	3 cut(s)	114, 498, 582
SspI	AATATT	1 cut(s)	399
SspMI	CTAG	1 cut(s)	636
StyD4I	CCNGG	2 cut(s)	91, 410
TaaI	ACNGT	1 cut(s)	646
TaqI	TCGA	2 cut(s)	297, 420
TasI	AATT	2 cut(s)	534, 566
TatI	WGTACW	1 cut(s)	557
TauI	GCSGC	1 cut(s)	585
TfiI	GAWTC	2 cut(s)	239, 367
Tru1I	TTAA	1 cut(s)	183
Tru9I	TTAA	1 cut(s)	183
TscAI	CASTG	2 cut(s)	447, 484
TseFI	GTSAC	1 cut(s)	538
TseI	GCWGC	2 cut(s)	32, 141
Tsp45I	GTSAC	1 cut(s)	538
TspDTI	ATGAA	4 cut(s)	6, 231, 559, 662
TspGWI	ACGGA	5 cut(s)	144, 189, 210, 609, 632
TspRI	CASTG	2 cut(s)	447, 484
XapI	RAATTY	1 cut(s)	566
XbaI	TCTAGA	1 cut(s)	635
XceI	RCATGY	1 cut(s)	114
XmnI	GAANNNNTTC	1 cut(s)	87
XspI	CTAG	1 cut(s)	636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.