Rmu_sc0006040.1_g000006

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006040.1
OG0001142
Physical Location & Seq
Forward (+)
21444 .. 24956
3513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006040.1_g000006.1.cds

Sequence Viewer

Length: 1158 bp
atggagaacggttacgatcggaaattcgctgataaattctccgggctggcgatttccggcggcgccggtgatcctattcgctccccgaataacaacagcaacaacaacaatgatagcagcttgtttcaggttatgaaggccgtggaagctgcggaggccacgattaagcaacaggtggaagagaacatccgattgaggactgagcttcagaacaagattcttgagctcgatagatataaagtagaggaatcgggggcacaaaggccgcgttccgatgatccttggtctgagcgcgtccaaggatcttatgaagctcatcaaccggttccccctgtcggtagtcaagaacataggattaggagtgcggtcaatacttctgtacttgatccatctggtacactagttctacaccaagagagtttgaagccaagggctgatgctcctctacaaagtaatgtggaaacccactccttgagcagcaagatcaatggaacaatgaaggaacttccgggtagtcagcagcctgcggataatactggcttgtctcacttatcttcaccatccacaacatccttctctcctggaaggtttaacacgcaaggagaatatgatccaaggttcaatttttctggacaagggttgatgcctataactgaattaaatcctagaagcctctggaagcaggatcttattgtcaagattcatgaacatgaagaagagattatgcaattacggaaaaatctgtctgattattccgtaaaggaagcacaaatacgcaatgaaaaatatgttctggagaagcgcattgcttatatgcgtctggcctttgatcaacagcaacaggatcttgttgatgctgcatcgaaagctctatcttaccgacaagacataattgaggaaaatatacgcctcacatatgcattacaggatgcagtgcaagagagatcgacatttgtttcatccttgctgccacttcttgcagattactctttgcagccacccgttcttgatgcccaatcaattgtcagcaatgtcaaggtcagccggggaactttaatataccgtcaccaccaccagcaggcagtagtagttacgagcagagttgcagtagacgacgaaatcgaatcaaatggagtgaaggcgagcaagaagccctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

385

Amino Acids

43.12

Weight (kDa)

5.86

Isoelectric Point (pI)

54.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 62
AccI GTMKAC 1 cut(s) 1110
AccII CGCG 2 cut(s) 268, 294
AciI CCGC 5 cut(s) 60, 152, 266, 365, 527
AclWI GGATC 7 cut(s) 65, 272, 310, 380, 605, 693, 852
AcsI RAATTY 2 cut(s) 23, 35
AcuI CTGAAG 1 cut(s) 191
AcyI GRCGYC 1 cut(s) 63
AfaI GTAC 2 cut(s) 381, 397
AfiI CCNNNNNNNGG 2 cut(s) 335, 1078
AgeI ACCGGT 1 cut(s) 322
AgsI TTSAA 2 cut(s) 424, 622
AhlI ACTAGT 1 cut(s) 400
AjnI CCWGG 1 cut(s) 580
AluBI AGCT 6 cut(s) 120, 149, 205, 226, 314, 869
AluI AGCT 6 cut(s) 120, 149, 205, 226, 314, 869
Alw21I GWGCWC 1 cut(s) 228
Alw26I GTCTC 1 cut(s) 549
AlwI GGATC 7 cut(s) 65, 272, 310, 380, 605, 693, 852
AoxI GGCC 4 cut(s) 138, 156, 263, 822
ApeKI GCWGC 7 cut(s) 117, 149, 477, 520, 857, 967, 994
ApoI RAATTY 2 cut(s) 23, 35
AsiGI ACCGGT 1 cut(s) 322
AspLEI GCGC 3 cut(s) 65, 294, 804
AsuC2I CCSGG 3 cut(s) 43, 510, 1046
AsuHPI GGTGA 3 cut(s) 80, 549, 1058
BaeGI GKGCMC 1 cut(s) 259
BaeI ACNNNNGTAYC 2 cut(s) 387, 420
BanI GGYRCC 1 cut(s) 62
BanII GRGCYC 1 cut(s) 228
BarI GAAGNNNNNNTAC 2 cut(s) 756, 788
Bbv12I GWGCWC 1 cut(s) 228
BbvI GCAGC 7 cut(s) 129, 136, 489, 532, 844, 954, 1006
BccI CCATC 2 cut(s) 397, 568
BceAI ACGGC 1 cut(s) 125
BciT130I CCWGG 1 cut(s) 582
BclI TGATCA 1 cut(s) 829
BcnI CCSGG 3 cut(s) 43, 510, 1046
BcoDI GTCTC 1 cut(s) 549
BcuI ACTAGT 1 cut(s) 400
BfaI CTAG 3 cut(s) 401, 666, 1156
BfoI RGCGCY 1 cut(s) 66
BisI GCNGC 9 cut(s) 61, 118, 150, 266, 478, 521, 858, 968, 995
BlsI GCNGC 9 cut(s) 62, 119, 151, 267, 479, 522, 859, 969, 996
Bme1390I CCNGG 4 cut(s) 43, 510, 582, 1046
BmiI GGNNCC 2 cut(s) 64, 327
BmrFI CCNGG 4 cut(s) 43, 510, 582, 1046
BmsI GCATC 6 cut(s) 427, 633, 844, 869, 919, 1000
BpmI CTGGAG 1 cut(s) 815
BpuEI CTTGAG 2 cut(s) 242, 493
BpuMI CCSGG 3 cut(s) 43, 510, 1046
BsaHI GRCGYC 1 cut(s) 63
BsaJI CCNNGG 6 cut(s) 141, 281, 298, 428, 614, 1045
BsaWI WCCGGW 1 cut(s) 322
Bsc4I CCNNNNNNNGG 2 cut(s) 335, 1078
Bse118I RCCGGY 2 cut(s) 65, 322
Bse1I ACTGG 1 cut(s) 541
Bse3DI GCAATG 3 cut(s) 784, 804, 1036
BseBI CCWGG 1 cut(s) 582
BseDI CCNNGG 6 cut(s) 141, 281, 298, 428, 614, 1045
BseGI GGATG 5 cut(s) 186, 560, 569, 934, 959
BseLI CCNNNNNNNGG 2 cut(s) 335, 1078
BseMI GCAATG 3 cut(s) 784, 804, 1036
BseMII CTCAG 2 cut(s) 192, 279
BseNI ACTGG 1 cut(s) 541
BseRI GAGGAG 1 cut(s) 432
BseSI GKGCMC 1 cut(s) 259
BseXI GCAGC 7 cut(s) 129, 136, 489, 532, 844, 954, 1006
Bsh1236I CGCG 2 cut(s) 268, 294
Bsh1285I CGRYCG 1 cut(s) 19
BshFI GGCC 4 cut(s) 140, 158, 265, 824
BshNI GGYRCC 1 cut(s) 62
BshTI ACCGGT 1 cut(s) 322
BsiEI CGRYCG 1 cut(s) 19
BsiHKAI GWGCWC 1 cut(s) 228
BsiSI CCGG 6 cut(s) 42, 57, 66, 323, 509, 1045
BslI CCNNNNNNNGG 2 cut(s) 335, 1078
BsmAI GTCTC 1 cut(s) 549
BsnI GGCC 4 cut(s) 140, 158, 265, 824
Bsp1286I GDGCHC 2 cut(s) 228, 259
BspACI CCGC 5 cut(s) 60, 152, 266, 365, 527
BspANI GGCC 4 cut(s) 140, 158, 265, 824
BspCNI CTCAG 2 cut(s) 193, 280
BspFNI CGCG 2 cut(s) 268, 294
BspHI TCATGA 1 cut(s) 703
BspLI GGNNCC 2 cut(s) 64, 327
BspPI GGATC 7 cut(s) 65, 272, 310, 380, 605, 693, 852
BspT107I GGYRCC 1 cut(s) 62
BsrDI GCAATG 3 cut(s) 784, 804, 1036
BsrFI RCCGGY 2 cut(s) 65, 322
BsrI ACTGG 1 cut(s) 541
BssAI RCCGGY 2 cut(s) 65, 322
BssECI CCNNGG 6 cut(s) 141, 281, 298, 428, 614, 1045
BssNI GRCGYC 1 cut(s) 63
BssT1I CCWWGG 4 cut(s) 281, 298, 428, 614
Bst2UI CCWGG 1 cut(s) 582
Bst4CI ACNGT 2 cut(s) 11, 1064
Bst6I CTCTTC 2 cut(s) 174, 711
BstACI GRCGYC 1 cut(s) 63
BstC8I GCNNGC 4 cut(s) 48, 525, 1080, 1144
BstDEI CTNAG 2 cut(s) 201, 288
BstDSI CCRYGG 1 cut(s) 141
BstF5I GGATG 5 cut(s) 186, 560, 569, 934, 959
BstFNI CGCG 2 cut(s) 268, 294
BstH2I RGCGCY 1 cut(s) 66
BstHHI GCGC 3 cut(s) 65, 294, 804
BstMAI GTCTC 1 cut(s) 549
BstMCI CGRYCG 1 cut(s) 19
BstMWI GCNNNNNNNGC 3 cut(s) 146, 155, 866
BstNI CCWGG 1 cut(s) 582
BstSCI CCNGG 4 cut(s) 41, 508, 580, 1044
BstSLI GKGCMC 1 cut(s) 259
BstUI CGCG 2 cut(s) 268, 294
BstV1I GCAGC 7 cut(s) 129, 136, 489, 532, 844, 954, 1006
BstX2I RGATCY 3 cut(s) 302, 685, 844
BstYI RGATCY 3 cut(s) 302, 685, 844
BsuRI GGCC 4 cut(s) 140, 158, 265, 824
BtgI CCRYGG 1 cut(s) 141
BtsCI GGATG 5 cut(s) 186, 560, 569, 934, 959
BtsI GCAGTG 1 cut(s) 939
BtsIMutI CAGTG 1 cut(s) 939
Cac8I GCNNGC 4 cut(s) 48, 525, 1080, 1144
CciI TCATGA 1 cut(s) 703
CfoI GCGC 3 cut(s) 65, 294, 804
Cfr10I RCCGGY 2 cut(s) 65, 322
CseI GACGC 2 cut(s) 283, 806
Csp6I GTAC 2 cut(s) 380, 396
CspAI ACCGGT 1 cut(s) 322
CviAII CATG 2 cut(s) 704, 710
CviQI GTAC 2 cut(s) 380, 396
DdeI CTNAG 2 cut(s) 201, 288
DinI GGCGCC 1 cut(s) 64
Eam1104I CTCTTC 2 cut(s) 174, 711
EarI CTCTTC 2 cut(s) 174, 711
Ecl136II GAGCTC 1 cut(s) 226
Eco130I CCWWGG 4 cut(s) 281, 298, 428, 614
Eco24I GRGCYC 1 cut(s) 228
Eco53kI GAGCTC 1 cut(s) 226
Eco57I CTGAAG 1 cut(s) 191
EcoICRI GAGCTC 1 cut(s) 226
EcoRII CCWGG 1 cut(s) 580
EcoT14I CCWWGG 4 cut(s) 281, 298, 428, 614
EcoT22I ATGCAT 1 cut(s) 922
EcoT38I GRGCYC 1 cut(s) 228
EgeI GGCGCC 1 cut(s) 64
EheI GGCGCC 1 cut(s) 64
ErhI CCWWGG 4 cut(s) 281, 298, 428, 614
FaeI CATG 2 cut(s) 707, 713
FatI CATG 2 cut(s) 703, 709
FauNDI CATATG 1 cut(s) 916
FbaI TGATCA 1 cut(s) 829
FblI GTMKAC 1 cut(s) 1110
Fnu4HI GCNGC 9 cut(s) 61, 118, 150, 266, 478, 521, 858, 968, 995
FokI GGATG 5 cut(s) 173, 547, 556, 941, 946
FriOI GRGCYC 1 cut(s) 228
Fsp4HI GCNGC 9 cut(s) 61, 118, 150, 266, 478, 521, 858, 968, 995
FspBI CTAG 3 cut(s) 401, 666, 1156
GlaI GCGC 3 cut(s) 64, 293, 803
GluI GCNGC 9 cut(s) 61, 118, 150, 266, 478, 521, 858, 968, 995
GsuI CTGGAG 1 cut(s) 815
HaeII RGCGCY 1 cut(s) 66
HaeIII GGCC 4 cut(s) 140, 158, 265, 824
HapII CCGG 6 cut(s) 42, 57, 66, 323, 509, 1045
HgaI GACGC 2 cut(s) 283, 806
HhaI GCGC 3 cut(s) 65, 294, 804
Hin1I GRCGYC 1 cut(s) 63
Hin1II CATG 2 cut(s) 707, 713
Hin6I GCGC 3 cut(s) 63, 292, 802
HinP1I GCGC 3 cut(s) 63, 292, 802
HinfI GANTC 4 cut(s) 217, 248, 700, 1124
HpaII CCGG 6 cut(s) 42, 57, 66, 323, 509, 1045
HphI GGTGA 3 cut(s) 80, 549, 1058
Hpy166II GTNNAC 2 cut(s) 398, 1111
Hpy188I TCNGA 6 cut(s) 21, 191, 210, 274, 289, 748
Hpy188III TCNNGA 8 cut(s) 221, 344, 630, 676, 697, 704, 794, 1007
Hpy8I GTNNAC 2 cut(s) 398, 1111
Hpy99I CGWCG 1 cut(s) 1118
HpyAV CCTTC 5 cut(s) 130, 493, 579, 583, 1132
HpyCH4III ACNGT 2 cut(s) 11, 1064
HpyCH4V TGCA 8 cut(s) 727, 860, 920, 932, 937, 980, 994, 1106
HpyF10VI GCNNNNNNNGC 3 cut(s) 146, 155, 866
HpyF3I CTNAG 2 cut(s) 201, 288
Hsp92I GRCGYC 1 cut(s) 63
Hsp92II CATG 2 cut(s) 707, 713
HspAI GCGC 3 cut(s) 63, 292, 802
KasI GGCGCC 1 cut(s) 62
Ksp22I TGATCA 1 cut(s) 829
LmnI GCTCC 2 cut(s) 86, 445
Lsp1109I GCAGC 7 cut(s) 129, 136, 489, 532, 844, 954, 1006
LweI GCATC 6 cut(s) 427, 633, 844, 869, 919, 1000
MaeI CTAG 3 cut(s) 401, 666, 1156
MaeIII GTNAC 3 cut(s) 11, 1064, 1090
MboII GAAGA 4 cut(s) 191, 546, 725, 728
MfeI CAATTG 1 cut(s) 1020
MflI RGATCY 3 cut(s) 302, 685, 844
MhlI GDGCHC 2 cut(s) 228, 259
MluCI AATT 7 cut(s) 23, 35, 622, 656, 728, 891, 1020
Mly113I GGCGCC 1 cut(s) 63
MnlI CCTC 7 cut(s) 148, 189, 238, 453, 683, 889, 920
Mph1103I ATGCAT 1 cut(s) 922
MseI TTAA 4 cut(s) 165, 591, 659, 1055
MslI CAYNNNNRTG 1 cut(s) 708
MspI CCGG 6 cut(s) 42, 57, 66, 323, 509, 1045
MspR9I CCNGG 4 cut(s) 43, 510, 582, 1046
MunI CAATTG 1 cut(s) 1020
MvaI CCWGG 1 cut(s) 582
MvnI CGCG 2 cut(s) 268, 294
MwoI GCNNNNNNNGC 3 cut(s) 146, 155, 866
NarI GGCGCC 1 cut(s) 63
NciI CCSGG 3 cut(s) 43, 510, 1046
NdeI CATATG 1 cut(s) 916
NlaIII CATG 2 cut(s) 707, 713
NlaIV GGNNCC 2 cut(s) 64, 327
NmuCI GTSAC 1 cut(s) 1064
NsiI ATGCAT 1 cut(s) 922
PagI TCATGA 1 cut(s) 703
PcsI WCGNNNNNNNCGW 1 cut(s) 1119
PfeI GAWTC 4 cut(s) 217, 248, 700, 1124
PfoI TCCNGGA 1 cut(s) 580
PinAI ACCGGT 1 cut(s) 322
PkrI GCNGC 9 cut(s) 62, 119, 151, 267, 479, 522, 859, 969, 996
Ple19I CGATCG 1 cut(s) 19
PluTI GGCGCC 1 cut(s) 66
Psp124BI GAGCTC 1 cut(s) 228
Psp6I CCWGG 1 cut(s) 580
PspGI CCWGG 1 cut(s) 580
PspN4I GGNNCC 2 cut(s) 64, 327
PsuI RGATCY 3 cut(s) 302, 685, 844
PvuI CGATCG 1 cut(s) 19
RsaI GTAC 2 cut(s) 381, 397
RsaNI GTAC 2 cut(s) 380, 396
RseI CAYNNNNRTG 1 cut(s) 708
SacI GAGCTC 1 cut(s) 228
SaqAI TTAA 4 cut(s) 165, 591, 659, 1055
SatI GCNGC 9 cut(s) 61, 118, 150, 266, 478, 521, 858, 968, 995
ScrFI CCNGG 4 cut(s) 43, 510, 582, 1046
SduI GDGCHC 2 cut(s) 228, 259
SfaNI GCATC 6 cut(s) 427, 633, 844, 869, 919, 1000
SfoI GGCGCC 1 cut(s) 64
SgrAI CRCCGGYG 1 cut(s) 65
SmiMI CAYNNNNRTG 1 cut(s) 708
SmlI CTYRAG 2 cut(s) 221, 472
SmoI CTYRAG 2 cut(s) 221, 472
SpeI ACTAGT 1 cut(s) 400
Sse9I AATT 7 cut(s) 23, 35, 622, 656, 728, 891, 1020
SsiI CCGC 5 cut(s) 60, 152, 266, 365, 527
SspDI GGCGCC 1 cut(s) 62
SspMI CTAG 3 cut(s) 401, 666, 1156
SstI GAGCTC 1 cut(s) 228
StyD4I CCNGG 4 cut(s) 41, 508, 580, 1044
StyI CCWWGG 4 cut(s) 281, 298, 428, 614
TaaI ACNGT 2 cut(s) 11, 1064
TaqI TCGA 4 cut(s) 228, 863, 947, 1122
TasI AATT 7 cut(s) 23, 35, 622, 656, 728, 891, 1020
TatI WGTACW 1 cut(s) 379
TauI GCSGC 2 cut(s) 63, 268
TfiI GAWTC 4 cut(s) 217, 248, 700, 1124
Tru1I TTAA 4 cut(s) 165, 591, 659, 1055
Tru9I TTAA 4 cut(s) 165, 591, 659, 1055
TscAI CASTG 1 cut(s) 939
TseFI GTSAC 1 cut(s) 1064
TseI GCWGC 7 cut(s) 117, 149, 477, 520, 857, 967, 994
Tsp45I GTSAC 1 cut(s) 1064
TspDTI ATGAA 8 cut(s) 149, 324, 512, 692, 720, 726, 795, 948
TspGWI ACGGA 2 cut(s) 745, 748
TspRI CASTG 1 cut(s) 939
XapI RAATTY 2 cut(s) 23, 35
XmiI GTMKAC 1 cut(s) 1110
XspI CTAG 3 cut(s) 401, 666, 1156
Zsp2I ATGCAT 1 cut(s) 922
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.