Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001142

Physical Location & Seq

Genomic Coordinates Forward (+)

62939314 .. 62944388

Gene Structure 5075 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00044160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2340 bp

ATGGGCCAGGGCGTATCGTATCTCTCCAACGTCGACTTGTACACCTCCAAGGCCGCCGGTTGGCGCAACACGTTTCGAGACCAAAACCAATTCTCTCACAGAGACTCTGCTGAATCCCAGCGGCACGAGCAAGGCACTAATTTGAATAATCCAACCATTCTTCCAAAGGCGGCAACAGAAGCCCACAACAGTAGAAAAACCACCAATTCACATGGAAATGAAGTGAAGCAGGAAACATCCCCCCCCCACAATAAACAAAGAGAGATGGAGAACGGACTGGATTGGAGAATTGCGGAGAAATTTTCAGGGTTGACGAGGACTCCCAGCCCTGATCCTAGTCGGTCCTCCGAAACCGACGACATTGGCTTGTTCCAGGTCATGAAGGCCGTCGAAGCTGCCGAGGCCACCATCAAGCGACAGGTCGAGGAGAACATCCGCTTGAGGTCTGAGCTCGAATACAAGACTCTCGAGCTCCACAGACGTAAACAACTCCACGAACCATCATCGATGGCGCCGCGGTCGTCTCTCGGTCCGGTAGGATCGGCTCGTCCGGATGTGAATAACTCAGGAGATAATCAAGAAGCTAGGGCGCCCAATTCCGATAATGGGGGATACAGCACGGAAGGGGAATATTATGATCCGCCGCGGGTGAATTCCGGGGAAGGGTTGATGCAATTGGATCATCCCGGCGAGAAGAATCTTGTGATCAAGATTCATGAAAATGAGCAGGAGATCATGCAATTGCGGAAGCAGCTGGCGGATTACTCGATGAAAGAAGCACAGATTCGGAACGAAAAGCATGTTCTCGAGGGTCGCATTGCTTACATGCGGTTGGTATTTGATCAGCAGCAGCAGGATCTTGCTGATGCTGCTTCCAAGGCTCTGGTGTACAGGCAAGATATAATTGAGGAGAACATACGGCTGGCTTATGCTTTGCAGGATGTGCAGCAGGAGAGGACGACGTTCGTTTCGGCATTGCTGCCGATTCTGGCGGACTACTCATTGCAGCCGCAGGTTCATGATGCTCAGTCCATTGCCGGCAATGTTAAGATTTTGTTTAGGCATTTGCAGGAGAAGCTTATTATGACAGAGTCGAAATTGAAGCAGTTTCAGTATCAAGTAAGACCTCTACAGTCGAATTCGAATCTGTCTAGCACTAACAATACCCAACAGTCACCTCCATCTCATTCCATTGGTGCAGCATTGGAAATTTCTAACAAAGATGGGCTTGAAATGGTTACTCACCCGCCATCTTCCCATGAGAAAGTACCGGCTTCTCCTCCTCCTGGTGCTCAGATGCAGACAACCGCCCCGAATTGGGATCAATCGGGTGGCCCTCAGAGCGGTTCAGGTGGTGTTGACACAGGCAATATTGAGCACAGTGAACCTCAAAACAGGAACTCTGTAACCCCAGCTGTACCTGCTAAGCCTACTATTGCTAGACTTGATGCAAATCGATATAGAGACGATACAACACCCGGAAAACAGGTCAAGTTTCGTGAGCCTGAGATGCAAACACACACAGATTATGATGATCATGACGAGGGATACAATGAGAGTGGAGGAACCTCTCCTTACACCGATCCCAGCTCCTCTTATCCTCGATATCTATCACCGGTTCATGAAGATCTGTTTTTAGACGAGGATGATCCATTACCAGCTATTGAGGGCCTCCAGATTTCGGGTGAAGCATTACCGGGACATGAGCTCCAAGCATCTGGATTCTCCATTAATGGAACAACCAGTTGCAACTTTGAGTGGGTACGCCACCTTCCAGATGGATCAGTTAACTACATTGAAGGAGCAAAGCAACCGAATTATCTTCTCACTGCTGATGATGTCGATACATACCTTGCTATCGAAGTTCAACCCCTGGATAACAGGAAGCGAAAGGGAGAGCTCGTGAAGGTGTTTGCAAACGATCACAAGAAGATCACTTGTGAGCCCGAAATGCAAAGCCAGATACAGAAGATTCTTCAAAAGGGTCATGGATCATTTAAGGTGTTTGAGAACACTGGGTTTCTTGACATATGGGAACCTGCCACTTTGGCCATTAAGAGGGGAGCTTACAGCATTAAGCGCAGCTCTGAACCTAGTGTTGGTGGAGTTGTGGTGGCTGAGAAGTTTTCACCCAACACAATTGTTTCGATTCCTTATGGAAGCCCTTCGGAATTCATCATCACCGATTCTGATATTGCTGGTGCTGATGCTGATCATCTTTTGAAAACAGACGATGCTAGCTGTTCTAGAGACACACTCGTGCTCATATTGAGATTATTTATCGTAAGGGCTGTTGAGAGAAGGACAAGGAAAGGGAAAAAAAGGGTATTATTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

779

Amino Acids

86.84

Weight (kDa)

5.61

Isoelectric Point (pI)

52.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IG_AIR9	PF23197	556 - 637	2.8e-07	AIR9 A9 domain
DUF7046	PF23080	670 - 772	1e-26	Domain of unknown function (DUF7046)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001142)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08440 AT5G08440 AT5G08440 AT5G23490 AT5G23490 AT5G23490 AT5G23490 AT5G23510 AT5G23510 AT5G23510
fragaria_vesca	FvH4_1g25960 FvH4_1g25960 FvH4_1g25960 FvH4_1g25960 FvH4_1g25960 FvH4_1g25960 FvH4_3g21410 FvH4_7g23540
malus_domestica	MD03G1185400.v1.1 MD04G1186900.v1.1 MD11G1230900.v1.1
prunus_persica	Prupe.4G196300_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1
pyrus_communis	pycom03g16520 pycom03g16530
rosa_chinensis	RchiOBHm_Chr1g0368691 RchiOBHm_Chr3g0485101 RchiOBHm_Chr5g0036791
rosa_laevigata	RLG00000023166 RLG00000027197 RLG00000033721
rosa_multiflora	Rmu_co8159396.1_g000001 Rmu_sc0000399.1_g000002 Rmu_sc0006040.1_g000006 Rmu_sc0006040.1_g000007
rosa_roxburghii	Rroxscaffold_1G00044160 Rroxscaffold_4G00288350 Rroxscaffold_6G00397190
rosa_rugosa	Rorug01G0343700 Rorug03G0216200 Rorug03G0216300
rosa_samantha	Rh3AG266300 Rh3BG301700 Rh3CG300000 Rh3DG295800 Rh5AG250300 Rh5BG252000 Rh5CG284000 Rh5DG260300
rosa_wichuraiana	Rw5G023020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	1003, 1429, 2047
AccB1I	GGYRCC	2 cut(s)	511, 589
AccBSI	CCGCTC	1 cut(s)	1344
AccI	GTMKAC	1 cut(s)	33
AccII	CGCG	2 cut(s)	517, 646
AccIII	TCCGGA	1 cut(s)	550
AcoI	YGGCCR	1 cut(s)	2049
AcsI	RAATTY	5 cut(s)	299, 652, 1138, 1209, 2171
AcyI	GRCGYC	2 cut(s)	512, 590
AfaI	GTAC	5 cut(s)	41, 890, 1269, 1419, 1764
AflIII	ACRYGT	1 cut(s)	69
AgeI	ACCGGT	1 cut(s)	1615
AgsI	TTSAA	7 cut(s)	145, 1102, 1232, 1799, 1868, 1979, 2224
AjnI	CCWGG	4 cut(s)	6, 372, 1285, 1872
AjuI	GAANNNNNNNTTGG	2 cut(s)	2082, 2114
AleI	CACNNNNGTG	1 cut(s)	2258
Alw21I	GWGCWC	7 cut(s)	453, 474, 1294, 1380, 1710, 1902, 2265
Alw26I	GTCTC	5 cut(s)	72, 96, 528, 1458, 2244
Ama87I	CYCGRG	2 cut(s)	467, 806
Aor13HI	TCCGGA	1 cut(s)	550
AoxI	GGCC	7 cut(s)	4, 51, 384, 402, 1333, 1669, 2049
ApoI	RAATTY	5 cut(s)	299, 652, 1138, 1209, 2171
ArsI	GACNNNNNNTTYG	2 cut(s)	952, 984
AseI	ATTAAT	1 cut(s)	1731
AsiGI	ACCGGT	1 cut(s)	1615
Asp700I	GAANNNNTTC	1 cut(s)	2164
AspLEI	GCGC	4 cut(s)	66, 514, 592, 2082
AspS9I	GGNCC	5 cut(s)	4, 342, 530, 1334, 1669
AsuC2I	CCSGG	4 cut(s)	658, 687, 1479, 1698
AsuHPI	GGTGA	7 cut(s)	661, 1167, 1235, 1605, 1697, 2121, 2173
AsuII	TTCGAA	1 cut(s)	1142
AsuNHI	GCTAGC	1 cut(s)	2237
AvaI	CYCGRG	2 cut(s)	467, 806
AvaII	GGWCC	2 cut(s)	342, 530
BalI	TGGCCA	1 cut(s)	2051
BanI	GGYRCC	2 cut(s)	511, 589
BanII	GRGCYC	5 cut(s)	453, 474, 1710, 1902, 1947
BarI	GAAGNNNNNNTAC	2 cut(s)	1755, 1787
BauI	CACGAG	3 cut(s)	125, 1901, 2258
Bbv12I	GWGCWC	7 cut(s)	453, 474, 1294, 1380, 1710, 1902, 2265
BccI	CCATC	8 cut(s)	259, 416, 502, 508, 1189, 1217, 1258, 1772
BceAI	ACGGC	2 cut(s)	371, 935
BciT130I	CCWGG	4 cut(s)	8, 374, 1287, 1874
BciVI	GTATCC	2 cut(s)	605, 1541
BclI	TGATCA	4 cut(s)	705, 841, 1534, 2212
BcnI	CCSGG	4 cut(s)	658, 687, 1479, 1698
BcoDI	GTCTC	5 cut(s)	72, 96, 528, 1458, 2244
BfaI	CTAG	7 cut(s)	336, 585, 1152, 1440, 2094, 2238, 2247
BfmI	CTRYAG	1 cut(s)	1130
BfoI	RGCGCY	2 cut(s)	515, 593
BfuAI	ACCTGC	3 cut(s)	1003, 1429, 2047
BfuI	GTATCC	2 cut(s)	605, 1541
BglI	GCCNNNNNGGC	1 cut(s)	2048
BglII	AGATCT	1 cut(s)	1627
BlpI	GCTNAGC	1 cut(s)	1425
Bme1390I	CCNGG	8 cut(s)	8, 374, 658, 687, 1287, 1479, 1698, 1874
Bme18I	GGWCC	2 cut(s)	342, 530
BmeT110I	CYCGRG	2 cut(s)	467, 806
BmgT120I	GGNCC	5 cut(s)	4, 342, 530, 1334, 1669
BmiI	GGNNCC	4 cut(s)	513, 591, 1567, 2037
BmrFI	CCNGG	8 cut(s)	8, 374, 658, 687, 1287, 1479, 1698, 1874
BmrI	ACTGGG	1 cut(s)	2025
BmsI	GCATC	9 cut(s)	660, 856, 1012, 1287, 1438, 1500, 1724, 2197, 2224
BmtI	GCTAGC	1 cut(s)	2241
BmuI	ACTGGG	1 cut(s)	2025
BplI	GAGNNNNNCTC	2 cut(s)	2241, 2273
BpmI	CTGGAG	1 cut(s)	1658
Bpu1102I	GCTNAGC	1 cut(s)	1425
Bpu14I	TTCGAA	1 cut(s)	1142
BpuEI	CTTGAG	1 cut(s)	460
BpuMI	CCSGG	4 cut(s)	658, 687, 1479, 1698
Bsa29I	ATCGAT	2 cut(s)	506, 1456
BsaBI	GATNNNNATC	3 cut(s)	1452, 1609, 2211
BsaHI	GRCGYC	2 cut(s)	512, 590
BsaI	GGTCTC	1 cut(s)	72
BsaJI	CCNNGG	8 cut(s)	7, 48, 399, 515, 644, 657, 876, 1872
BsaWI	WCCGGW	3 cut(s)	532, 550, 1615
BsaXI	ACNNNNNCTCC	8 cut(s)	304, 334, 1692, 1722, 1887, 1917, 2097, 2127
Bse118I	RCCGGY	4 cut(s)	56, 1037, 1270, 1615
Bse1I	ACTGG	3 cut(s)	282, 1743, 2020
Bse3DI	GCAATG	5 cut(s)	816, 974, 1001, 1032, 1048
Bse8I	GATNNNNATC	3 cut(s)	1452, 1609, 2211
BseAI	TCCGGA	1 cut(s)	550
BseBI	CCWGG	4 cut(s)	8, 374, 1287, 1874
BseCI	ATCGAT	2 cut(s)	506, 1456
BseDI	CCNNGG	8 cut(s)	7, 48, 399, 515, 644, 657, 876, 1872
BseGI	GGATG	6 cut(s)	236, 432, 559, 682, 946, 1651
BseJI	GATNNNNATC	3 cut(s)	1452, 1609, 2211
BseMI	GCAATG	5 cut(s)	816, 974, 1001, 1032, 1048
BseMII	CTCAG	7 cut(s)	438, 579, 1040, 1307, 1352, 1497, 2109
BseNI	ACTGG	3 cut(s)	282, 1743, 2020
BseRI	GAGGAG	5 cut(s)	440, 923, 1269, 1272, 1582
BseYI	CCCAGC	4 cut(s)	117, 323, 1411, 1586
BsgI	GTGCAG	2 cut(s)	965, 1218
Bsh1236I	CGCG	2 cut(s)	517, 646
Bsh1285I	CGRYCG	1 cut(s)	521
BshFI	GGCC	7 cut(s)	6, 53, 386, 404, 1335, 1671, 2051
BshNI	GGYRCC	2 cut(s)	511, 589
BshTI	ACCGGT	1 cut(s)	1615
BshVI	ATCGAT	2 cut(s)	506, 1456
BsiEI	CGRYCG	1 cut(s)	521
BsiHKAI	GWGCWC	7 cut(s)	453, 474, 1294, 1380, 1710, 1902, 2265
BsiHKCI	CYCGRG	2 cut(s)	467, 806
BslFI	GGGAC	1 cut(s)	1713
BsmAI	GTCTC	5 cut(s)	72, 96, 528, 1458, 2244
BsmBI	CGTCTC	2 cut(s)	528, 1458
BsmFI	GGGAC	1 cut(s)	1713
BsnI	GGCC	7 cut(s)	6, 53, 386, 404, 1335, 1671, 2051
Bso31I	GGTCTC	1 cut(s)	72
BsoBI	CYCGRG	2 cut(s)	467, 806
Bsp119I	TTCGAA	1 cut(s)	1142
Bsp1286I	GDGCHC	8 cut(s)	453, 474, 1294, 1380, 1710, 1902, 1947, 2265
Bsp13I	TCCGGA	1 cut(s)	550
Bsp1407I	TGTACA	2 cut(s)	39, 888
Bsp1720I	GCTNAGC	1 cut(s)	1425
BspANI	GGCC	7 cut(s)	6, 53, 386, 404, 1335, 1671, 2051
BspCNI	CTCAG	7 cut(s)	439, 578, 1039, 1306, 1351, 1498, 2110
BspDI	ATCGAT	2 cut(s)	506, 1456
BspEI	TCCGGA	1 cut(s)	550
BspFNI	CGCG	2 cut(s)	517, 646
BspHI	TCATGA	5 cut(s)	378, 715, 1018, 1537, 1621
BspLI	GGNNCC	4 cut(s)	513, 591, 1567, 2037
BspMI	ACCTGC	3 cut(s)	1003, 1429, 2047
BspOI	GCTAGC	1 cut(s)	2241
BspT104I	TTCGAA	1 cut(s)	1142
BspT107I	GGYRCC	2 cut(s)	511, 589
BspTNI	GGTCTC	1 cut(s)	72
BsrBI	CCGCTC	1 cut(s)	1344
BsrDI	GCAATG	5 cut(s)	816, 974, 1001, 1032, 1048
BsrFI	RCCGGY	4 cut(s)	56, 1037, 1270, 1615
BsrGI	TGTACA	2 cut(s)	39, 888
BsrI	ACTGG	3 cut(s)	282, 1743, 2020
BssAI	RCCGGY	4 cut(s)	56, 1037, 1270, 1615
BssECI	CCNNGG	8 cut(s)	7, 48, 399, 515, 644, 657, 876, 1872
BssNI	GRCGYC	2 cut(s)	512, 590
BssSI	CACGAG	3 cut(s)	125, 1901, 2258
BssT1I	CCWWGG	2 cut(s)	48, 876
Bst2BI	CACGAG	3 cut(s)	125, 1901, 2258
Bst2UI	CCWGG	4 cut(s)	8, 374, 1287, 1874
Bst4CI	ACNGT	4 cut(s)	191, 1134, 1173, 1382
BstACI	GRCGYC	2 cut(s)	512, 590
BstAPI	GCANNNNNTGC	1 cut(s)	943
BstAUI	TGTACA	2 cut(s)	39, 888
BstBI	TTCGAA	1 cut(s)	1142
BstC8I	GCNNGC	4 cut(s)	756, 924, 1039, 2239
BstDEI	CTNAG	8 cut(s)	447, 565, 1026, 1293, 1338, 1425, 1506, 2118
BstDSI	CCRYGG	2 cut(s)	515, 644
BstF5I	GGATG	6 cut(s)	236, 432, 559, 682, 946, 1651
BstFNI	CGCG	2 cut(s)	517, 646
BstH2I	RGCGCY	2 cut(s)	515, 593
BstHHI	GCGC	4 cut(s)	66, 514, 592, 2082
BstMAI	GTCTC	5 cut(s)	72, 96, 528, 1458, 2244
BstMCI	CGRYCG	1 cut(s)	521
BstNI	CCWGG	4 cut(s)	8, 374, 1287, 1874
BstNSI	RCATGY	2 cut(s)	803, 829
BstSCI	CCNGG	8 cut(s)	6, 372, 656, 685, 1285, 1477, 1696, 1872
BstSFI	CTRYAG	1 cut(s)	1130
BstUI	CGCG	2 cut(s)	517, 646
BstX2I	RGATCY	2 cut(s)	856, 1627
BstXI	CCANNNNNNTGG	2 cut(s)	883, 1718
BstYI	RGATCY	2 cut(s)	856, 1627
Bsu15I	ATCGAT	2 cut(s)	506, 1456
BsuI	GTATCC	2 cut(s)	605, 1541
BsuRI	GGCC	7 cut(s)	6, 53, 386, 404, 1335, 1671, 2051
BsuTUI	ATCGAT	2 cut(s)	506, 1456
BtgI	CCRYGG	2 cut(s)	515, 644
BtsCI	GGATG	6 cut(s)	236, 432, 559, 682, 946, 1651
BtsI	GCAGTG	1 cut(s)	1827
BtsIMutI	CAGTG	3 cut(s)	1387, 1827, 2013
BveI	ACCTGC	3 cut(s)	1003, 1429, 2047
Cac8I	GCNNGC	4 cut(s)	756, 924, 1039, 2239
CciI	TCATGA	5 cut(s)	378, 715, 1018, 1537, 1621
CfoI	GCGC	4 cut(s)	66, 514, 592, 2082
Cfr10I	RCCGGY	4 cut(s)	56, 1037, 1270, 1615
Cfr13I	GGNCC	5 cut(s)	4, 342, 530, 1334, 1669
Cfr42I	CCGCGG	2 cut(s)	518, 647
ClaI	ATCGAT	2 cut(s)	506, 1456
CpoI	CGGWCCG	1 cut(s)	530
Csp6I	GTAC	5 cut(s)	40, 889, 1268, 1418, 1763
CspAI	ACCGGT	1 cut(s)	1615
CspCI	CAANNNNNGTGG	2 cut(s)	1540, 1575
CspI	CGGWCCG	1 cut(s)	530
CviQI	GTAC	5 cut(s)	40, 889, 1268, 1418, 1763
DdeI	CTNAG	8 cut(s)	447, 565, 1026, 1293, 1338, 1425, 1506, 2118
DinI	GGCGCC	2 cut(s)	513, 591
EaeI	YGGCCR	1 cut(s)	2049
EciI	GGCGGA	3 cut(s)	630, 773, 1007
Ecl136II	GAGCTC	4 cut(s)	451, 472, 1708, 1900
Eco130I	CCWWGG	2 cut(s)	48, 876
Eco24I	GRGCYC	5 cut(s)	453, 474, 1710, 1902, 1947
Eco31I	GGTCTC	1 cut(s)	72
Eco32I	GATATC	1 cut(s)	1607
Eco47I	GGWCC	2 cut(s)	342, 530
Eco53kI	GAGCTC	4 cut(s)	451, 472, 1708, 1900
Eco88I	CYCGRG	2 cut(s)	467, 806
EcoICRI	GAGCTC	4 cut(s)	451, 472, 1708, 1900
EcoO109I	RGGNCCY	1 cut(s)	1669
EcoRI	GAATTC	3 cut(s)	652, 1138, 2171
EcoRII	CCWGG	4 cut(s)	6, 372, 1285, 1872
EcoRV	GATATC	1 cut(s)	1607
EcoT14I	CCWWGG	2 cut(s)	48, 876
EcoT38I	GRGCYC	5 cut(s)	453, 474, 1710, 1902, 1947
EgeI	GGCGCC	2 cut(s)	513, 591
EheI	GGCGCC	2 cut(s)	513, 591
ErhI	CCWWGG	2 cut(s)	48, 876
Esp3I	CGTCTC	2 cut(s)	528, 1458
FalI	AAGNNNNNCTT	2 cut(s)	1212, 1244
FaqI	GGGAC	1 cut(s)	1713
FauI	CCCGC	2 cut(s)	639, 1254
FauNDI	CATATG	1 cut(s)	2030
FbaI	TGATCA	4 cut(s)	705, 841, 1534, 2212
FblI	GTMKAC	1 cut(s)	33
FokI	GGATG	6 cut(s)	223, 419, 566, 669, 953, 1658
FriOI	GRGCYC	5 cut(s)	453, 474, 1710, 1902, 1947
FspBI	CTAG	7 cut(s)	336, 585, 1152, 1440, 2094, 2238, 2247
GlaI	GCGC	4 cut(s)	65, 513, 591, 2081
GsaI	CCCAGC	4 cut(s)	121, 327, 1415, 1590
GsuI	CTGGAG	1 cut(s)	1658
HaeII	RGCGCY	2 cut(s)	515, 593
HaeIII	GGCC	7 cut(s)	6, 53, 386, 404, 1335, 1671, 2051
HhaI	GCGC	4 cut(s)	66, 514, 592, 2082
Hin1I	GRCGYC	2 cut(s)	512, 590
Hin6I	GCGC	4 cut(s)	64, 512, 590, 2080
HinP1I	GCGC	4 cut(s)	64, 512, 590, 2080
HincII	GTYRAC	4 cut(s)	34, 312, 1360, 1789
HindII	GTYRAC	4 cut(s)	34, 312, 1360, 1789
HindIII	AAGCTT	1 cut(s)	1076
HpaI	GTTAAC	1 cut(s)	1789
HphI	GGTGA	7 cut(s)	661, 1167, 1235, 1605, 1697, 2121, 2173
Hpy166II	GTNNAC	8 cut(s)	34, 42, 312, 485, 889, 1360, 1385, 1789
Hpy8I	GTNNAC	8 cut(s)	34, 42, 312, 485, 889, 1360, 1385, 1789
Hpy99I	CGWCG	4 cut(s)	35, 359, 392, 964
HpyAV	CCTTC	8 cut(s)	376, 617, 656, 1781, 1793, 1900, 2175, 2295
HpyCH4III	ACNGT	4 cut(s)	191, 1134, 1173, 1382
HpyCH4IV	ACGT	4 cut(s)	30, 71, 481, 962
HpyF3I	CTNAG	8 cut(s)	447, 565, 1026, 1293, 1338, 1425, 1506, 2118
HpySE526I	ACGT	4 cut(s)	30, 71, 481, 962
Hsp92I	GRCGYC	2 cut(s)	512, 590
HspAI	GCGC	4 cut(s)	64, 512, 590, 2080
KasI	GGCGCC	2 cut(s)	511, 589
Kpn2I	TCCGGA	1 cut(s)	550
KroI	GCCGGC	1 cut(s)	1037
KroNI	GCCGGC	1 cut(s)	1039
Ksp22I	TGATCA	4 cut(s)	705, 841, 1534, 2212
KspAI	GTTAAC	1 cut(s)	1789
KspI	CCGCGG	2 cut(s)	518, 647
LmnI	GCTCC	5 cut(s)	477, 1595, 1713, 1802, 2063
LweI	GCATC	9 cut(s)	660, 856, 1012, 1287, 1438, 1500, 1724, 2197, 2224
MaeI	CTAG	7 cut(s)	336, 585, 1152, 1440, 2094, 2238, 2247
MaeII	ACGT	4 cut(s)	30, 71, 481, 962
MaeIII	GTNAC	3 cut(s)	1173, 1237, 1405
MbiI	CCGCTC	1 cut(s)	1344
MboII	GAAGA	8 cut(s)	152, 706, 1245, 1637, 1814, 1942, 1967, 1981
MfeI	CAATTG	3 cut(s)	674, 740, 2139
MflI	RGATCY	2 cut(s)	856, 1627
MhlI	GDGCHC	8 cut(s)	453, 474, 1294, 1380, 1710, 1902, 1947, 2265
MlsI	TGGCCA	1 cut(s)	2051
MluNI	TGGCCA	1 cut(s)	2051
Mly113I	GGCGCC	2 cut(s)	512, 590
MlyI	GAGTC	4 cut(s)	98, 313, 457, 1100
MmeI	TCCRAC	2 cut(s)	51, 176
Mox20I	TGGCCA	1 cut(s)	2051
MroI	TCCGGA	1 cut(s)	550
MroNI	GCCGGC	1 cut(s)	1037
MroXI	GAANNNNTTC	1 cut(s)	2164
MscI	TGGCCA	1 cut(s)	2051
MseI	TTAA	6 cut(s)	1047, 1731, 1788, 1998, 2055, 2076
MslI	CAYNNNNRTG	3 cut(s)	216, 720, 2258
Msp20I	TGGCCA	1 cut(s)	2051
MspA1I	CMGCKG	5 cut(s)	121, 517, 646, 754, 1415
MspR9I	CCNGG	8 cut(s)	8, 374, 658, 687, 1287, 1479, 1698, 1874
MunI	CAATTG	3 cut(s)	674, 740, 2139
MvaI	CCWGG	4 cut(s)	8, 374, 1287, 1874
MvnI	CGCG	2 cut(s)	517, 646
NaeI	GCCGGC	1 cut(s)	1039
NarI	GGCGCC	2 cut(s)	512, 590
NciI	CCSGG	4 cut(s)	658, 687, 1479, 1698
NdeI	CATATG	1 cut(s)	2030
NgoMIV	GCCGGC	1 cut(s)	1037
NheI	GCTAGC	1 cut(s)	2237
NlaIV	GGNNCC	4 cut(s)	513, 591, 1567, 2037
NmeAIII	GCCGAG	1 cut(s)	424
NmuCI	GTSAC	1 cut(s)	1173
NspI	RCATGY	2 cut(s)	803, 829
NspV	TTCGAA	1 cut(s)	1142
OliI	CACNNNNGTG	1 cut(s)	2258
PaeR7I	CTCGAG	2 cut(s)	467, 806
PagI	TCATGA	5 cut(s)	378, 715, 1018, 1537, 1621
PcsI	WCGNNNNNNNCGW	1 cut(s)	396
PdiI	GCCGGC	1 cut(s)	1039
PdmI	GAANNNNTTC	1 cut(s)	2164
PflFI	GACNNNGTC	1 cut(s)	1090
PinAI	ACCGGT	1 cut(s)	1615
PleI	GAGTC	4 cut(s)	98, 313, 457, 1099
PluTI	GGCGCC	2 cut(s)	515, 593
PpsI	GAGTC	4 cut(s)	98, 313, 457, 1099
PshBI	ATTAAT	1 cut(s)	1731
Psp124BI	GAGCTC	4 cut(s)	453, 474, 1710, 1902
Psp6I	CCWGG	4 cut(s)	6, 372, 1285, 1872
PspFI	CCCAGC	4 cut(s)	117, 323, 1411, 1586
PspGI	CCWGG	4 cut(s)	6, 372, 1285, 1872
PspN4I	GGNNCC	4 cut(s)	513, 591, 1567, 2037
PspPI	GGNCC	5 cut(s)	4, 342, 530, 1334, 1669
PsuI	RGATCY	2 cut(s)	856, 1627
PsyI	GACNNNGTC	1 cut(s)	1090
PvuII	CAGCTG	2 cut(s)	754, 1415
RsaI	GTAC	5 cut(s)	41, 890, 1269, 1419, 1764
RsaNI	GTAC	5 cut(s)	40, 889, 1268, 1418, 1763
RseI	CAYNNNNRTG	3 cut(s)	216, 720, 2258
Rsr2I	CGGWCCG	1 cut(s)	530
RsrII	CGGWCCG	1 cut(s)	530
SacI	GAGCTC	4 cut(s)	453, 474, 1710, 1902
SacII	CCGCGG	2 cut(s)	518, 647
SalI	GTCGAC	1 cut(s)	32
SaqAI	TTAA	6 cut(s)	1047, 1731, 1788, 1998, 2055, 2076
Sau96I	GGNCC	5 cut(s)	4, 342, 530, 1334, 1669
SchI	GAGTC	4 cut(s)	98, 313, 457, 1100
ScrFI	CCNGG	8 cut(s)	8, 374, 658, 687, 1287, 1479, 1698, 1874
SduI	GDGCHC	8 cut(s)	453, 474, 1294, 1380, 1710, 1902, 1947, 2265
SfaNI	GCATC	9 cut(s)	660, 856, 1012, 1287, 1438, 1500, 1724, 2197, 2224
SfcI	CTRYAG	1 cut(s)	1130
SfoI	GGCGCC	2 cut(s)	513, 591
Sfr274I	CTCGAG	2 cut(s)	467, 806
Sfr303I	CCGCGG	2 cut(s)	518, 647
SfuI	TTCGAA	1 cut(s)	1142
SgrBI	CCGCGG	2 cut(s)	518, 647
SinI	GGWCC	2 cut(s)	342, 530
SlaI	CTCGAG	2 cut(s)	467, 806
SmiMI	CAYNNNNRTG	3 cut(s)	216, 720, 2258
SmlI	CTYRAG	3 cut(s)	439, 467, 806
SmoI	CTYRAG	3 cut(s)	439, 467, 806
SspDI	GGCGCC	2 cut(s)	511, 589
SspI	AATATT	2 cut(s)	632, 1372
SspMI	CTAG	7 cut(s)	336, 585, 1152, 1440, 2094, 2238, 2247
SstI	GAGCTC	4 cut(s)	453, 474, 1710, 1902
StyD4I	CCNGG	8 cut(s)	6, 372, 656, 685, 1285, 1477, 1696, 1872
StyI	CCWWGG	2 cut(s)	48, 876
TaaI	ACNGT	4 cut(s)	191, 1134, 1173, 1382
TaiI	ACGT	4 cut(s)	33, 74, 484, 965
TaqII	GACCGA	2 cut(s)	330, 518
TatI	WGTACW	2 cut(s)	39, 888
TauI	GCSGC	6 cut(s)	56, 124, 173, 517, 646, 1012
Tru1I	TTAA	6 cut(s)	1047, 1731, 1788, 1998, 2055, 2076
Tru9I	TTAA	6 cut(s)	1047, 1731, 1788, 1998, 2055, 2076
TscAI	CASTG	3 cut(s)	1387, 1834, 2020
TseFI	GTSAC	1 cut(s)	1173
Tsp45I	GTSAC	1 cut(s)	1173
TspDTI	ATGAA	9 cut(s)	234, 395, 704, 732, 785, 1007, 1610, 1638, 2164
TspGWI	ACGGA	2 cut(s)	288, 635
TspRI	CASTG	3 cut(s)	1387, 1834, 2020
Tth111I	GACNNNGTC	1 cut(s)	1090
VpaK11BI	GGWCC	2 cut(s)	342, 530
VspI	ATTAAT	1 cut(s)	1731
XapI	RAATTY	5 cut(s)	299, 652, 1138, 1209, 2171
XbaI	TCTAGA	1 cut(s)	2246
XceI	RCATGY	2 cut(s)	803, 829
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1775
XhoI	CTCGAG	2 cut(s)	467, 806
XmiI	GTMKAC	1 cut(s)	33
XmnI	GAANNNNTTC	1 cut(s)	2164
XspI	CTAG	7 cut(s)	336, 585, 1152, 1440, 2094, 2238, 2247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.