Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001142

Physical Location & Seq

Genomic Coordinates Forward (+)

9198898 .. 9204148

Gene Structure 5251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00288350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGAGGGCCAACGCCGTTACAAGAGCCACAAAACCTCCTCATCATCGTCGGAGAGCAGACCTCTGTTACAATTATCCCAGCTCTCGGCATTCTCAGTATGAAACACCGGTTCTTGTAGACGACACTTCAATTTCAAAGGACAATGAAGATGATGATCCATTGCCAGGTATAGACTGCCTCCAAATTCCAGGTGAAGCTCTTCCGGGATGCGAACTTCATGCATGTGGATACTTAACCAAGGGAGCAACTAGTTGCAACTTTCAGTGGGTGCGCCATCATCTAGATGGATCAGTTCATTACATTAATGGAGAAACAAAACCAAAATATCTCATTACTGCTGACGATGTTGATGCATACCTTGCTATTGAAGTTGAGGCTCTAGATGATCAAAGGAACAGAAAGGGAGAGCTTGAAAAAGTCTTTGCCAATAAGCACAAAAAGATCAGTTTTGGCCCTAAAATGCAATACCAGATACACAAAATACTTTTCGAGGGTGAGAAATCACTTCGAGTGGTTCATTTCACTCGATGTCTTAACAAATGGCAATCTGCTGTGTTGGTCATTAAGAGGAGATCTTACAGAGTTGACGACCTTGTCTTTGGTGGAGTTAGTGTCATACTCCCTGACCAAAAGTATTCGCTGCACACAGTTGTTTCAATTCCTTATGGAAGTCCTGTAGAATTCATGATAACTGATTTTGATAGTAGCTGCGGTGAAGTTGGCGATCATCTATTCAAATTAATGGACACATCAATTTATTGGTCTAGAGATGTAGTTGTGCTCATACTGAGATCATTTATCCGAAGGGCAGTTCAAAAAAGATCAAGTGAAGGAAAAGGAAGGCTGGAGGAGGAGGAGAAACCAGAAGATTTTTCTTTCTTTCCTGAAGATCATTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

299

Amino Acids

34.21

Weight (kDa)

6.36

Isoelectric Point (pI)

48.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7046	PF23080	172 - 276	1e-09	Domain of unknown function (DUF7046)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001142)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08440 AT5G08440 AT5G08440 AT5G23490 AT5G23490 AT5G23490 AT5G23490 AT5G23510 AT5G23510 AT5G23510
fragaria_vesca	FvH4_1g25960 FvH4_1g25960 FvH4_1g25960 FvH4_1g25960 FvH4_1g25960 FvH4_1g25960 FvH4_3g21410 FvH4_7g23540
malus_domestica	MD03G1185400.v1.1 MD04G1186900.v1.1 MD11G1230900.v1.1
prunus_persica	Prupe.4G196300_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1
pyrus_communis	pycom03g16520 pycom03g16530
rosa_chinensis	RchiOBHm_Chr1g0368691 RchiOBHm_Chr3g0485101 RchiOBHm_Chr5g0036791
rosa_laevigata	RLG00000023166 RLG00000027197 RLG00000033721
rosa_multiflora	Rmu_co8159396.1_g000001 Rmu_sc0000399.1_g000002 Rmu_sc0006040.1_g000006 Rmu_sc0006040.1_g000007
rosa_roxburghii	Rroxscaffold_1G00044160 Rroxscaffold_4G00288350 Rroxscaffold_6G00397190
rosa_rugosa	Rorug01G0343700 Rorug03G0216200 Rorug03G0216300
rosa_samantha	Rh3AG266300 Rh3BG301700 Rh3CG300000 Rh3DG295800 Rh5AG250300 Rh5BG252000 Rh5CG284000 Rh5DG260300
rosa_wichuraiana	Rw5G023020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	593
AccI	GTMKAC	1 cut(s)	117
AciI	CCGC	1 cut(s)	711
AclWI	GGATC	2 cut(s)	149, 295
AcsI	RAATTY	2 cut(s)	183, 680
AfiI	CCNNNNNNNGG	2 cut(s)	84, 164
AgeI	ACCGGT	1 cut(s)	106
AgsI	TTSAA	7 cut(s)	129, 135, 368, 413, 657, 736, 815
AhlI	ACTAGT	1 cut(s)	248
AjnI	CCWGG	2 cut(s)	163, 187
AluBI	AGCT	4 cut(s)	81, 197, 409, 708
AluI	AGCT	4 cut(s)	81, 197, 409, 708
Alw21I	GWGCWC	1 cut(s)	783
AlwI	GGATC	2 cut(s)	149, 295
AoxI	GGCC	2 cut(s)	6, 451
ApeKI	GCWGC	2 cut(s)	640, 708
ApoI	RAATTY	2 cut(s)	183, 680
ArsI	GACNNNNNNTTYG	2 cut(s)	581, 613
AseI	ATTAAT	2 cut(s)	303, 740
AsiGI	ACCGGT	1 cut(s)	106
Asp700I	GAANNNNTTC	1 cut(s)	198
AspLEI	GCGC	1 cut(s)	273
AspS9I	GGNCC	2 cut(s)	6, 452
AsuC2I	CCSGG	1 cut(s)	204
AsuHPI	GGTGA	3 cut(s)	203, 506, 725
Bbv12I	GWGCWC	1 cut(s)	783
BbvI	GCAGC	2 cut(s)	627, 695
BccI	CCATC	2 cut(s)	278, 282
BcgI	CGANNNNNNTGC	4 cut(s)	200, 234, 332, 366
BciT130I	CCWGG	2 cut(s)	165, 189
BciVI	GTATCC	1 cut(s)	221
BclI	TGATCA	1 cut(s)	385
BcnI	CCSGG	1 cut(s)	204
BcuI	ACTAGT	1 cut(s)	248
BfaI	CTAG	4 cut(s)	249, 281, 380, 765
BfmI	CTRYAG	1 cut(s)	675
BfuI	GTATCC	1 cut(s)	221
BglII	AGATCT	1 cut(s)	572
BisI	GCNGC	2 cut(s)	641, 709
BlsI	GCNGC	2 cut(s)	642, 710
Bme1390I	CCNGG	3 cut(s)	165, 189, 204
BmgT120I	GGNCC	2 cut(s)	6, 452
BmrFI	CCNGG	3 cut(s)	165, 189, 204
BmsI	GCATC	2 cut(s)	197, 340
BplI	GAGNNNNNCTC	2 cut(s)	45, 77
BpmI	CTGGAG	1 cut(s)	866
BpuMI	CCSGG	1 cut(s)	204
BsaBI	GATNNNNATC	1 cut(s)	153
BsaJI	CCNNGG	1 cut(s)	237
BsaWI	WCCGGW	1 cut(s)	106
BsaXI	ACNNNNNCTCC	4 cut(s)	19, 49, 597, 627
Bsc4I	CCNNNNNNNGG	2 cut(s)	84, 164
Bse118I	RCCGGY	1 cut(s)	106
Bse3DI	GCAATG	1 cut(s)	158
Bse8I	GATNNNNATC	1 cut(s)	153
BseBI	CCWGG	2 cut(s)	165, 189
BseDI	CCNNGG	1 cut(s)	237
BseGI	GGATG	1 cut(s)	212
BseJI	GATNNNNATC	1 cut(s)	153
BseLI	CCNNNNNNNGG	2 cut(s)	84, 164
BseMI	GCAATG	1 cut(s)	158
BseMII	CTCAG	2 cut(s)	107, 779
BseRI	GAGGAG	5 cut(s)	27, 583, 863, 866, 869
BseXI	GCAGC	2 cut(s)	627, 695
BseYI	CCCAGC	1 cut(s)	77
BsgI	GTGCAG	1 cut(s)	626
BshFI	GGCC	2 cut(s)	8, 453
BshTI	ACCGGT	1 cut(s)	106
BsiHKAI	GWGCWC	1 cut(s)	783
BsiSI	CCGG	2 cut(s)	107, 203
BslI	CCNNNNNNNGG	2 cut(s)	84, 164
BsmI	GAATGC	1 cut(s)	88
BsnI	GGCC	2 cut(s)	8, 453
Bsp1286I	GDGCHC	1 cut(s)	783
Bsp143I	GATC	9 cut(s)	154, 287, 385, 441, 572, 724, 791, 821, 889
BspACI	CCGC	1 cut(s)	711
BspANI	GGCC	2 cut(s)	8, 453
BspCNI	CTCAG	2 cut(s)	106, 780
BspHI	TCATGA	1 cut(s)	684
BspPI	GGATC	2 cut(s)	149, 295
BspQI	GCTCTTC	1 cut(s)	204
BsrDI	GCAATG	1 cut(s)	158
BsrFI	RCCGGY	1 cut(s)	106
BssAI	RCCGGY	1 cut(s)	106
BssECI	CCNNGG	1 cut(s)	237
BssMI	GATC	9 cut(s)	154, 287, 385, 441, 572, 724, 791, 821, 889
BssT1I	CCWWGG	1 cut(s)	237
Bst2UI	CCWGG	2 cut(s)	165, 189
Bst4CI	ACNGT	1 cut(s)	649
Bst6I	CTCTTC	1 cut(s)	204
BstAPI	GCANNNNNTGC	1 cut(s)	359
BstDEI	CTNAG	2 cut(s)	93, 788
BstF5I	GGATG	1 cut(s)	212
BstHHI	GCGC	1 cut(s)	273
BstKTI	GATC	9 cut(s)	157, 290, 388, 444, 575, 727, 794, 824, 892
BstMBI	GATC	9 cut(s)	154, 287, 385, 441, 572, 724, 791, 821, 889
BstMWI	GCNNNNNNNGC	1 cut(s)	359
BstNI	CCWGG	2 cut(s)	165, 189
BstNSI	RCATGY	1 cut(s)	225
BstSCI	CCNGG	3 cut(s)	163, 187, 202
BstSFI	CTRYAG	1 cut(s)	675
BstV1I	GCAGC	2 cut(s)	627, 695
BstX2I	RGATCY	1 cut(s)	572
BstYI	RGATCY	1 cut(s)	572
BsuI	GTATCC	1 cut(s)	221
BsuRI	GGCC	2 cut(s)	8, 453
BtsCI	GGATG	1 cut(s)	212
BtsIMutI	CAGTG	1 cut(s)	269
CciI	TCATGA	1 cut(s)	684
CfoI	GCGC	1 cut(s)	273
Cfr10I	RCCGGY	1 cut(s)	106
Cfr13I	GGNCC	2 cut(s)	6, 452
CspAI	ACCGGT	1 cut(s)	106
CviAII	CATG	3 cut(s)	218, 222, 685
CviJI	RGCY	9 cut(s)	8, 26, 81, 197, 377, 409, 453, 708, 844
CviKI_1	RGCY	9 cut(s)	8, 26, 81, 197, 377, 409, 453, 708, 844
DdeI	CTNAG	2 cut(s)	93, 788
DpnI	GATC	9 cut(s)	156, 289, 387, 443, 574, 726, 793, 823, 891
DpnII	GATC	9 cut(s)	154, 287, 385, 441, 572, 724, 791, 821, 889
DrdI	GACNNNNNNGTC	1 cut(s)	593
DseDI	GACNNNNNNGTC	1 cut(s)	593
Eam1104I	CTCTTC	1 cut(s)	204
EarI	CTCTTC	1 cut(s)	204
Eco130I	CCWWGG	1 cut(s)	237
EcoRI	GAATTC	1 cut(s)	680
EcoRII	CCWGG	2 cut(s)	163, 187
EcoT14I	CCWWGG	1 cut(s)	237
EcoT22I	ATGCAT	2 cut(s)	223, 355
ErhI	CCWWGG	1 cut(s)	237
FaeI	CATG	3 cut(s)	221, 225, 688
FaiI	YATR	9 cut(s)	99, 170, 219, 223, 355, 617, 666, 686, 785
FatI	CATG	3 cut(s)	217, 221, 684
FbaI	TGATCA	1 cut(s)	385
FblI	GTMKAC	1 cut(s)	117
Fnu4HI	GCNGC	2 cut(s)	641, 709
FokI	GGATG	1 cut(s)	219
Fsp4HI	GCNGC	2 cut(s)	641, 709
FspBI	CTAG	4 cut(s)	249, 281, 380, 765
GlaI	GCGC	1 cut(s)	272
GluI	GCNGC	2 cut(s)	641, 709
GsaI	CCCAGC	1 cut(s)	81
GsuI	CTGGAG	1 cut(s)	866
HaeIII	GGCC	2 cut(s)	8, 453
HapII	CCGG	2 cut(s)	107, 203
HhaI	GCGC	1 cut(s)	273
Hin1II	CATG	3 cut(s)	221, 225, 688
Hin6I	GCGC	1 cut(s)	271
HinP1I	GCGC	1 cut(s)	271
HincII	GTYRAC	1 cut(s)	586
HindII	GTYRAC	1 cut(s)	586
HpaII	CCGG	2 cut(s)	107, 203
HphI	GGTGA	3 cut(s)	203, 506, 725
Hpy166II	GTNNAC	2 cut(s)	118, 586
Hpy188I	TCNGA	2 cut(s)	51, 803
Hpy188III	TCNNGA	5 cut(s)	281, 380, 685, 765, 884
Hpy8I	GTNNAC	2 cut(s)	118, 586
Hpy99I	CGWCG	1 cut(s)	51
HpyAV	CCTTC	3 cut(s)	798, 824, 834
HpyCH4III	ACNGT	1 cut(s)	649
HpyCH4V	TGCA	5 cut(s)	221, 255, 353, 463, 643
HpyF10VI	GCNNNNNNNGC	1 cut(s)	359
HpyF3I	CTNAG	2 cut(s)	93, 788
Hsp92II	CATG	3 cut(s)	221, 225, 688
HspAI	GCGC	1 cut(s)	271
Ksp22I	TGATCA	1 cut(s)	385
Kzo9I	GATC	9 cut(s)	154, 287, 385, 441, 572, 724, 791, 821, 889
LguI	GCTCTTC	1 cut(s)	204
LmnI	GCTCC	1 cut(s)	242
Lsp1109I	GCAGC	2 cut(s)	627, 695
LweI	GCATC	2 cut(s)	197, 340
MaeI	CTAG	4 cut(s)	249, 281, 380, 765
MaeIII	GTNAC	2 cut(s)	16, 65
MalI	GATC	9 cut(s)	156, 289, 387, 443, 574, 726, 793, 823, 891
MboI	GATC	9 cut(s)	154, 287, 385, 441, 572, 724, 791, 821, 889
MboII	GAAGA	4 cut(s)	158, 191, 878, 899
MflI	RGATCY	1 cut(s)	572
MhlI	GDGCHC	1 cut(s)	783
MluCI	AATT	7 cut(s)	70, 129, 183, 657, 680, 737, 753
MmeI	TCCRAC	1 cut(s)	29
Mph1103I	ATGCAT	2 cut(s)	223, 355
MroXI	GAANNNNTTC	1 cut(s)	198
MseI	TTAA	6 cut(s)	233, 303, 534, 564, 740, 898
MslI	CAYNNNNRTG	2 cut(s)	222, 282
MspI	CCGG	2 cut(s)	107, 203
MspR9I	CCNGG	3 cut(s)	165, 189, 204
Mva1269I	GAATGC	1 cut(s)	88
MvaI	CCWGG	2 cut(s)	165, 189
MwoI	GCNNNNNNNGC	1 cut(s)	359
NciI	CCSGG	1 cut(s)	204
NdeII	GATC	9 cut(s)	154, 287, 385, 441, 572, 724, 791, 821, 889
NlaIII	CATG	3 cut(s)	221, 225, 688
NmeAIII	GCCGAG	1 cut(s)	64
NsiI	ATGCAT	2 cut(s)	223, 355
NspI	RCATGY	1 cut(s)	225
PagI	TCATGA	1 cut(s)	684
PciSI	GCTCTTC	1 cut(s)	204
PctI	GAATGC	1 cut(s)	88
PdmI	GAANNNNTTC	1 cut(s)	198
PflFI	GACNNNGTC	1 cut(s)	593
PfoI	TCCNGGA	1 cut(s)	202
PinAI	ACCGGT	1 cut(s)	106
PkrI	GCNGC	2 cut(s)	642, 710
PshBI	ATTAAT	2 cut(s)	303, 740
Psp6I	CCWGG	2 cut(s)	163, 187
PspFI	CCCAGC	1 cut(s)	77
PspGI	CCWGG	2 cut(s)	163, 187
PspPI	GGNCC	2 cut(s)	6, 452
PsuI	RGATCY	1 cut(s)	572
PsyI	GACNNNGTC	1 cut(s)	593
RseI	CAYNNNNRTG	2 cut(s)	222, 282
SapI	GCTCTTC	1 cut(s)	204
SaqAI	TTAA	6 cut(s)	233, 303, 534, 564, 740, 898
SatI	GCNGC	2 cut(s)	641, 709
Sau3AI	GATC	9 cut(s)	154, 287, 385, 441, 572, 724, 791, 821, 889
Sau96I	GGNCC	2 cut(s)	6, 452
ScrFI	CCNGG	3 cut(s)	165, 189, 204
SduI	GDGCHC	1 cut(s)	783
SfaNI	GCATC	2 cut(s)	197, 340
SfcI	CTRYAG	1 cut(s)	675
SmiMI	CAYNNNNRTG	2 cut(s)	222, 282
SpeI	ACTAGT	1 cut(s)	248
Sse9I	AATT	7 cut(s)	70, 129, 183, 657, 680, 737, 753
SsiI	CCGC	1 cut(s)	711
SspMI	CTAG	4 cut(s)	249, 281, 380, 765
StyD4I	CCNGG	3 cut(s)	163, 187, 202
StyI	CCWWGG	1 cut(s)	237
TaaI	ACNGT	1 cut(s)	649
TaqI	TCGA	3 cut(s)	489, 508, 526
TasI	AATT	7 cut(s)	70, 129, 183, 657, 680, 737, 753
Tru1I	TTAA	6 cut(s)	233, 303, 534, 564, 740, 898
Tru9I	TTAA	6 cut(s)	233, 303, 534, 564, 740, 898
TscAI	CASTG	1 cut(s)	269
TseI	GCWGC	2 cut(s)	640, 708
TspDTI	ATGAA	6 cut(s)	114, 159, 206, 284, 506, 673
TspRI	CASTG	1 cut(s)	269
Tth111I	GACNNNGTC	1 cut(s)	593
VspI	ATTAAT	2 cut(s)	303, 740
XapI	RAATTY	2 cut(s)	183, 680
XbaI	TCTAGA	3 cut(s)	280, 379, 764
XceI	RCATGY	1 cut(s)	225
XcmI	CCANNNNNNNNNTGG	1 cut(s)	281
XmiI	GTMKAC	1 cut(s)	117
XmnI	GAANNNNTTC	1 cut(s)	198
XspI	CTAG	4 cut(s)	249, 281, 380, 765
Zsp2I	ATGCAT	2 cut(s)	223, 355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.