Rmu_sc0006040.1_g000007

isoform X1

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006040.1
Physical Location & Seq
Forward (+)
24979 .. 34527
9549 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006040.1_g000007.1.cds

Sequence Viewer

Length: 1560 bp
atggagaacggttacgatcggaaattcgctgataaattctccgggctggcgatttccggcggcgccggtgatcctattcgctccccgaataacaacagcaacaacaacaatgatagcagcttgtttcaggttatgaaggccgtggaagctgcggaggccacgattaagcaacaggtggaagagaacatccgattgaggactgagcttcagaacaagattcttgagctcgatagatatgttctttttaaacatttgcaagaaaagctccttcttactgagacaaaactaaaggagtcacagtatcatttacgaccttggaactcagagttgaataactctaacattcccatgcagtcaccatctcattctgttggtgccgtgttgacaacttcaaacaaaaatggacttgaactggttcctcagcaaacatattctcagggaaaagcacccgtttctgcttctgatgttcagactaccagggattgggatctattgggtcgtgatcagagtgctttggatggtgttgtcaataggaatgtggaacccaatgacctggggaggtattcacctttggttagcaggaattctgcagcacaagatacacctactcagcttgatgttactcgaggtgatgcaccaataactcgttatagtgaagaaaccaccaataaacaggtcacatttcgtgatcctgtcaggaacacagagcttgatgatcaagatcctgagggaagccaaaatgagagagaaatgacaaccaattggagtccaggaaacactccttacacaacaacacctgatgaccccggctcttcgtatcataattttctaccaccagttctggaagaaccgtcttcttcattttctgaggctgcagaggatgatccattaccagctatcgagaacctccaaatttcaggagaagcttttccggggagagaacttcaagcgtgcgggtactctatcaatgggacaaccagttgcaattttgagtgggtacgccatatggaagatggatcagttaattatattgagggagcaaagcaaccaaactatctaattactgctgacgatgttcatacatatcttgctattgaagtccagcctctcgataacaggaatcgcaagggagagcttgtaagggtttttgcaaatgaggacagaaagattgtctgtgatcctgaaatgcaaagtcagatagagaagaattattatcaaggtcattcttcatttaaaatccatcaggcgacaggatatcttgatatatgggaacctgctatattgaccattaagaaggacagttacagtattaagcgtgcggaacccagtggtgctgtaatcaatgaaaagttttcgccgacaactagtgttggaattccttatggaagccctactgagttcgtgctaactggttctggtggtagtcagcatctcttaaaagcagacaatgaccaggcagattatagctgttctagagatacgattgtgctcacattgagatcatttatcctaagggctgttgagagaaagaaaaagaaaaagaaaggaattcttttttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

519

Amino Acids

57.96

Weight (kDa)

5.09

Isoelectric Point (pI)

48.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1282
AccB1I GGYRCC 2 cut(s) 62, 374
AccB7I CCANNNNNTGG 1 cut(s) 483
AciI CCGC 4 cut(s) 60, 152, 954, 1319
AclWI GGATC 7 cut(s) 65, 495, 683, 716, 878, 1024, 1172
AcsI RAATTY 6 cut(s) 23, 35, 583, 912, 1374, 1548
AcuI CTGAAG 1 cut(s) 191
AcyI GRCGYC 1 cut(s) 63
AfaI GTAC 2 cut(s) 959, 999
AfiI CCNNNNNNNGG 1 cut(s) 483
AgsI TTSAA 5 cut(s) 331, 393, 410, 947, 1097
AhlI ACTAGT 1 cut(s) 1364
AjnI CCWGG 4 cut(s) 476, 552, 769, 1452
Alw21I GWGCWC 2 cut(s) 228, 1491
Alw26I GTCTC 1 cut(s) 272
AlwI GGATC 7 cut(s) 65, 495, 683, 716, 878, 1024, 1172
Ama87I CYCGRG 1 cut(s) 624
AoxI GGCC 2 cut(s) 138, 156
ApeKI GCWGC 4 cut(s) 117, 149, 590, 872
ApoI RAATTY 6 cut(s) 23, 35, 583, 912, 1374, 1548
Asp700I GAANNNNTTC 2 cut(s) 414, 927
AspLEI GCGC 1 cut(s) 65
AsuC2I CCSGG 3 cut(s) 43, 807, 933
AsuHPI GGTGA 4 cut(s) 80, 348, 558, 641
AvaI CYCGRG 1 cut(s) 624
AxyI CCTNAGG 2 cut(s) 726, 1511
BaeI ACNNNNGTAYC 2 cut(s) 1470, 1503
BanI GGYRCC 2 cut(s) 62, 374
BanII GRGCYC 1 cut(s) 228
BarI GAAGNNNNNNTAC 2 cut(s) 1286, 1318
BbsI GAAGAC 1 cut(s) 846
Bbv12I GWGCWC 2 cut(s) 228, 1491
BbvCI CCTCAGC 1 cut(s) 420
BbvI GCAGC 4 cut(s) 129, 136, 602, 859
BccI CCATC 4 cut(s) 367, 512, 1007, 1248
BceAI ACGGC 2 cut(s) 125, 362
BciT130I CCWGG 4 cut(s) 478, 554, 771, 1454
BclI TGATCA 2 cut(s) 502, 715
BcnI CCSGG 3 cut(s) 43, 807, 933
BcoDI GTCTC 1 cut(s) 272
BcuI ACTAGT 1 cut(s) 1364
BfaI CTAG 2 cut(s) 1365, 1473
BfmI CTRYAG 2 cut(s) 588, 873
BfoI RGCGCY 1 cut(s) 66
BfuAI ACCTGC 1 cut(s) 1282
BisI GCNGC 5 cut(s) 61, 118, 150, 591, 873
BlsI GCNGC 5 cut(s) 62, 119, 151, 592, 874
Bme1390I CCNGG 7 cut(s) 43, 478, 554, 771, 807, 933, 1454
BmeT110I CYCGRG 1 cut(s) 624
BmiI GGNNCC 6 cut(s) 64, 376, 417, 543, 1272, 1323
BmrFI CCNGG 7 cut(s) 43, 478, 554, 771, 807, 933, 1454
BmrI ACTGGG 1 cut(s) 1320
BmsI GCATC 2 cut(s) 622, 1438
BmuI ACTGGG 1 cut(s) 1320
BpiI GAAGAC 1 cut(s) 846
Bpu10I CCTNAGC 1 cut(s) 420
BpuEI CTTGAG 1 cut(s) 242
BpuMI CCSGG 3 cut(s) 43, 807, 933
BsaBI GATNNNNATC 2 cut(s) 486, 720
BsaHI GRCGYC 1 cut(s) 63
BsaJI CCNNGG 6 cut(s) 141, 314, 477, 553, 805, 932
BsaXI ACNNNNNCTCC 4 cut(s) 284, 314, 1122, 1152
Bsc4I CCNNNNNNNGG 1 cut(s) 483
Bse118I RCCGGY 1 cut(s) 65
Bse1I ACTGG 5 cut(s) 417, 836, 978, 1326, 1414
Bse21I CCTNAGG 2 cut(s) 726, 1511
Bse8I GATNNNNATC 2 cut(s) 486, 720
BseBI CCWGG 4 cut(s) 478, 554, 771, 1454
BseDI CCNNGG 6 cut(s) 141, 314, 477, 553, 805, 932
BseGI GGATG 3 cut(s) 186, 523, 886
BseJI GATNNNNATC 2 cut(s) 486, 720
BseLI CCNNNNNNNGG 1 cut(s) 483
BseMII CTCAG 9 cut(s) 192, 267, 336, 434, 449, 623, 717, 858, 1386
BseNI ACTGG 5 cut(s) 417, 836, 978, 1326, 1414
BseXI GCAGC 4 cut(s) 129, 136, 602, 859
Bsh1285I CGRYCG 1 cut(s) 19
BshFI GGCC 2 cut(s) 140, 158
BshNI GGYRCC 2 cut(s) 62, 374
BsiEI CGRYCG 1 cut(s) 19
BsiHKAI GWGCWC 2 cut(s) 228, 1491
BsiHKCI CYCGRG 1 cut(s) 624
BsiSI CCGG 5 cut(s) 42, 57, 66, 807, 932
BslFI GGGAC 1 cut(s) 985
BslI CCNNNNNNNGG 1 cut(s) 483
BsmAI GTCTC 1 cut(s) 272
BsmFI GGGAC 1 cut(s) 985
BsnI GGCC 2 cut(s) 140, 158
BsoBI CYCGRG 1 cut(s) 624
Bsp1286I GDGCHC 2 cut(s) 228, 1491
BspACI CCGC 4 cut(s) 60, 152, 954, 1319
BspANI GGCC 2 cut(s) 140, 158
BspCNI CTCAG 9 cut(s) 193, 268, 335, 433, 448, 622, 718, 859, 1387
BspLI GGNNCC 6 cut(s) 64, 376, 417, 543, 1272, 1323
BspMAI CTGCAG 2 cut(s) 592, 877
BspMI ACCTGC 1 cut(s) 1282
BspPI GGATC 7 cut(s) 65, 495, 683, 716, 878, 1024, 1172
BspQI GCTCTTC 1 cut(s) 817
BspT107I GGYRCC 2 cut(s) 62, 374
BsrFI RCCGGY 1 cut(s) 65
BsrI ACTGG 5 cut(s) 417, 836, 978, 1326, 1414
BssAI RCCGGY 1 cut(s) 65
BssECI CCNNGG 6 cut(s) 141, 314, 477, 553, 805, 932
BssNI GRCGYC 1 cut(s) 63
BssT1I CCWWGG 1 cut(s) 314
Bst2UI CCWGG 4 cut(s) 478, 554, 771, 1454
Bst4CI ACNGT 5 cut(s) 11, 300, 852, 1301, 1307
Bst6I CTCTTC 2 cut(s) 174, 817
BstACI GRCGYC 1 cut(s) 63
BstC8I GCNNGC 3 cut(s) 48, 952, 1317
BstDSI CCRYGG 1 cut(s) 141
BstF5I GGATG 3 cut(s) 186, 523, 886
BstH2I RGCGCY 1 cut(s) 66
BstHHI GCGC 1 cut(s) 65
BstMAI GTCTC 1 cut(s) 272
BstMCI CGRYCG 1 cut(s) 19
BstMWI GCNNNNNNNGC 3 cut(s) 146, 155, 262
BstNI CCWGG 4 cut(s) 478, 554, 771, 1454
BstSCI CCNGG 7 cut(s) 41, 476, 552, 769, 805, 931, 1452
BstSFI CTRYAG 2 cut(s) 588, 873
BstV1I GCAGC 4 cut(s) 129, 136, 602, 859
BstV2I GAAGAC 1 cut(s) 846
BstX2I RGATCY 2 cut(s) 487, 721
BstXI CCANNNNNNTGG 1 cut(s) 553
BstYI RGATCY 2 cut(s) 487, 721
Bsu36I CCTNAGG 2 cut(s) 726, 1511
BsuRI GGCC 2 cut(s) 140, 158
BtgI CCRYGG 1 cut(s) 141
BtsCI GGATG 3 cut(s) 186, 523, 886
BtsIMutI CAGTG 1 cut(s) 1333
BveI ACCTGC 1 cut(s) 1282
Cac8I GCNNGC 3 cut(s) 48, 952, 1317
CfoI GCGC 1 cut(s) 65
Cfr10I RCCGGY 1 cut(s) 65
Csp6I GTAC 2 cut(s) 958, 998
CviAII CATG 1 cut(s) 349
CviQI GTAC 2 cut(s) 958, 998
DinI GGCGCC 1 cut(s) 64
DraI TTTAAA 2 cut(s) 247, 1234
Eam1104I CTCTTC 2 cut(s) 174, 817
EarI CTCTTC 2 cut(s) 174, 817
Ecl136II GAGCTC 1 cut(s) 226
Eco130I CCWWGG 1 cut(s) 314
Eco24I GRGCYC 1 cut(s) 228
Eco32I GATATC 1 cut(s) 1256
Eco53kI GAGCTC 1 cut(s) 226
Eco57I CTGAAG 1 cut(s) 191
Eco81I CCTNAGG 2 cut(s) 726, 1511
Eco88I CYCGRG 1 cut(s) 624
EcoICRI GAGCTC 1 cut(s) 226
EcoRI GAATTC 3 cut(s) 583, 1374, 1548
EcoRII CCWGG 4 cut(s) 476, 552, 769, 1452
EcoRV GATATC 1 cut(s) 1256
EcoT14I CCWWGG 1 cut(s) 314
EcoT38I GRGCYC 1 cut(s) 228
EgeI GGCGCC 1 cut(s) 64
EheI GGCGCC 1 cut(s) 64
ErhI CCWWGG 1 cut(s) 314
FaeI CATG 1 cut(s) 352
FalI AAGNNNNNCTT 1 cut(s) 1536
FaqI GGGAC 1 cut(s) 985
FatI CATG 1 cut(s) 348
FauI CCCGC 1 cut(s) 947
FauNDI CATATG 1 cut(s) 1005
FbaI TGATCA 2 cut(s) 502, 715
Fnu4HI GCNGC 5 cut(s) 61, 118, 150, 591, 873
FokI GGATG 3 cut(s) 173, 530, 893
FriOI GRGCYC 1 cut(s) 228
Fsp4HI GCNGC 5 cut(s) 61, 118, 150, 591, 873
FspBI CTAG 2 cut(s) 1365, 1473
GlaI GCGC 1 cut(s) 64
GluI GCNGC 5 cut(s) 61, 118, 150, 591, 873
HaeII RGCGCY 1 cut(s) 66
HaeIII GGCC 2 cut(s) 140, 158
HapII CCGG 5 cut(s) 42, 57, 66, 807, 932
HhaI GCGC 1 cut(s) 65
Hin1I GRCGYC 1 cut(s) 63
Hin1II CATG 1 cut(s) 352
Hin6I GCGC 1 cut(s) 63
HinP1I GCGC 1 cut(s) 63
HincII GTYRAC 1 cut(s) 384
HindII GTYRAC 1 cut(s) 384
HindIII AAGCTT 1 cut(s) 924
HinfI GANTC 4 cut(s) 217, 293, 766, 1120
HpaII CCGG 5 cut(s) 42, 57, 66, 807, 932
HphI GGTGA 4 cut(s) 80, 348, 558, 641
Hpy166II GTNNAC 1 cut(s) 384
Hpy188I TCNGA 9 cut(s) 21, 191, 210, 325, 463, 471, 507, 868, 1197
Hpy8I GTNNAC 1 cut(s) 384
HpyAV CCTTC 3 cut(s) 130, 278, 1288
HpyCH4III ACNGT 5 cut(s) 11, 300, 852, 1301, 1307
HpyCH4V TGCA 8 cut(s) 256, 352, 590, 635, 875, 984, 1151, 1189
HpyF10VI GCNNNNNNNGC 3 cut(s) 146, 155, 262
Hsp92I GRCGYC 1 cut(s) 63
Hsp92II CATG 1 cut(s) 352
HspAI GCGC 1 cut(s) 63
KasI GGCGCC 1 cut(s) 62
Ksp22I TGATCA 2 cut(s) 502, 715
LguI GCTCTTC 1 cut(s) 817
LmnI GCTCC 3 cut(s) 86, 270, 1037
Lsp1109I GCAGC 4 cut(s) 129, 136, 602, 859
LweI GCATC 2 cut(s) 622, 1438
MaeI CTAG 2 cut(s) 1365, 1473
MaeIII GTNAC 6 cut(s) 11, 294, 354, 619, 676, 1301
MboII GAAGA 9 cut(s) 191, 668, 804, 846, 849, 857, 1022, 1216, 1218
MfeI CAATTG 1 cut(s) 760
MflI RGATCY 2 cut(s) 487, 721
MhlI GDGCHC 2 cut(s) 228, 1491
Mly113I GGCGCC 1 cut(s) 63
MlyI GAGTC 2 cut(s) 302, 775
MmeI TCCRAC 1 cut(s) 1351
MroXI GAANNNNTTC 2 cut(s) 414, 927
MseI TTAA 8 cut(s) 165, 246, 1023, 1233, 1290, 1311, 1436, 1558
MslI CAYNNNNRTG 1 cut(s) 347
MspI CCGG 5 cut(s) 42, 57, 66, 807, 932
MspR9I CCNGG 7 cut(s) 43, 478, 554, 771, 807, 933, 1454
MunI CAATTG 1 cut(s) 760
MvaI CCWGG 4 cut(s) 478, 554, 771, 1454
MwoI GCNNNNNNNGC 3 cut(s) 146, 155, 262
NarI GGCGCC 1 cut(s) 63
NciI CCSGG 3 cut(s) 43, 807, 933
NdeI CATATG 1 cut(s) 1005
NlaIII CATG 1 cut(s) 352
NlaIV GGNNCC 6 cut(s) 64, 376, 417, 543, 1272, 1323
NmuCI GTSAC 3 cut(s) 294, 354, 676
PaeR7I CTCGAG 1 cut(s) 624
PciSI GCTCTTC 1 cut(s) 817
PdmI GAANNNNTTC 2 cut(s) 414, 927
PfeI GAWTC 2 cut(s) 217, 1120
PflMI CCANNNNNTGG 1 cut(s) 483
PfoI TCCNGGA 1 cut(s) 769
PkrI GCNGC 5 cut(s) 62, 119, 151, 592, 874
Ple19I CGATCG 1 cut(s) 19
PleI GAGTC 2 cut(s) 301, 774
PluTI GGCGCC 1 cut(s) 66
PpsI GAGTC 2 cut(s) 301, 774
Psp124BI GAGCTC 1 cut(s) 228
Psp6I CCWGG 4 cut(s) 476, 552, 769, 1452
PspGI CCWGG 4 cut(s) 476, 552, 769, 1452
PspN4I GGNNCC 6 cut(s) 64, 376, 417, 543, 1272, 1323
PspXI VCTCGAGB 1 cut(s) 624
PstI CTGCAG 2 cut(s) 592, 877
PsuI RGATCY 2 cut(s) 487, 721
PvuI CGATCG 1 cut(s) 19
RsaI GTAC 2 cut(s) 959, 999
RsaNI GTAC 2 cut(s) 958, 998
RseI CAYNNNNRTG 1 cut(s) 347
SacI GAGCTC 1 cut(s) 228
SapI GCTCTTC 1 cut(s) 817
SaqAI TTAA 8 cut(s) 165, 246, 1023, 1233, 1290, 1311, 1436, 1558
SatI GCNGC 5 cut(s) 61, 118, 150, 591, 873
SchI GAGTC 2 cut(s) 302, 775
ScrFI CCNGG 7 cut(s) 43, 478, 554, 771, 807, 933, 1454
SduI GDGCHC 2 cut(s) 228, 1491
SfaNI GCATC 2 cut(s) 622, 1438
SfcI CTRYAG 2 cut(s) 588, 873
SfoI GGCGCC 1 cut(s) 64
Sfr274I CTCGAG 1 cut(s) 624
SgrAI CRCCGGYG 1 cut(s) 65
SlaI CTCGAG 1 cut(s) 624
SmiMI CAYNNNNRTG 1 cut(s) 347
SmlI CTYRAG 2 cut(s) 221, 624
SmoI CTYRAG 2 cut(s) 221, 624
SpeI ACTAGT 1 cut(s) 1364
SsiI CCGC 4 cut(s) 60, 152, 954, 1319
SspDI GGCGCC 1 cut(s) 62
SspMI CTAG 2 cut(s) 1365, 1473
SstI GAGCTC 1 cut(s) 228
StyD4I CCNGG 7 cut(s) 41, 476, 552, 769, 805, 931, 1452
StyI CCWWGG 1 cut(s) 314
TaaI ACNGT 5 cut(s) 11, 300, 852, 1301, 1307
TaqI TCGA 4 cut(s) 228, 625, 900, 1110
TauI GCSGC 1 cut(s) 63
TfiI GAWTC 2 cut(s) 217, 1120
Tru1I TTAA 8 cut(s) 165, 246, 1023, 1233, 1290, 1311, 1436, 1558
Tru9I TTAA 8 cut(s) 165, 246, 1023, 1233, 1290, 1311, 1436, 1558
TscAI CASTG 1 cut(s) 1333
TseFI GTSAC 3 cut(s) 294, 354, 676
TseI GCWGC 4 cut(s) 117, 149, 590, 872
Tsp45I GTSAC 3 cut(s) 294, 354, 676
TspDTI ATGAA 5 cut(s) 149, 849, 1067, 1218, 1359
TspRI CASTG 1 cut(s) 1333
Van91I CCANNNNNTGG 1 cut(s) 483
XapI RAATTY 6 cut(s) 23, 35, 583, 912, 1374, 1548
XbaI TCTAGA 1 cut(s) 1472
XcmI CCANNNNNNNNNTGG 1 cut(s) 1010
XhoI CTCGAG 1 cut(s) 624
XmnI GAANNNNTTC 2 cut(s) 414, 927
XspI CTAG 2 cut(s) 1365, 1473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.