Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8159396.1

Orthogroup ID

OG0001142

Physical Location & Seq

Genomic Coordinates Forward (+)

107 .. 451

Gene Structure 345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8159396.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

atggagaacggttacgatcggaaattcgctgataaattctccgggctggcgatttccggcggcgccggtgatcctattcgctccccgaataacaacagcaacaacaacaatgatagcagcttgtttcaggttatgaaggccgtggaagctgcggaggccacgattaagcaacaggtggaagagaacatccgattgaggactgagcttcagaacaagattcttgagctcgatagatatgtgagtcctcaagattttcgcctttctttacttatttcttggaatttcttgtgttttcttagtgtttatttctggaaaaaattagtggtgaacgatagattcaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

114

Amino Acids

13.14

Weight (kDa)

7.82

Isoelectric Point (pI)

38.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001142)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08440 AT5G08440 AT5G08440 AT5G23490 AT5G23490 AT5G23490 AT5G23490 AT5G23510 AT5G23510 AT5G23510
fragaria_vesca	FvH4_1g25960 FvH4_1g25960 FvH4_1g25960 FvH4_1g25960 FvH4_1g25960 FvH4_1g25960 FvH4_3g21410 FvH4_7g23540
malus_domestica	MD03G1185400.v1.1 MD04G1186900.v1.1 MD11G1230900.v1.1
prunus_persica	Prupe.4G196300_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1
pyrus_communis	pycom03g16520 pycom03g16530
rosa_chinensis	RchiOBHm_Chr1g0368691 RchiOBHm_Chr3g0485101 RchiOBHm_Chr5g0036791
rosa_laevigata	RLG00000023166 RLG00000027197 RLG00000033721
rosa_multiflora	Rmu_co8159396.1_g000001 Rmu_sc0000399.1_g000002 Rmu_sc0006040.1_g000006 Rmu_sc0006040.1_g000007
rosa_roxburghii	Rroxscaffold_1G00044160 Rroxscaffold_4G00288350 Rroxscaffold_6G00397190
rosa_rugosa	Rorug01G0343700 Rorug03G0216200 Rorug03G0216300
rosa_samantha	Rh3AG266300 Rh3BG301700 Rh3CG300000 Rh3DG295800 Rh5AG250300 Rh5BG252000 Rh5CG284000 Rh5DG260300
rosa_wichuraiana	Rw5G023020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	62
AciI	CCGC	2 cut(s)	60, 152
AclWI	GGATC	1 cut(s)	65
AcsI	RAATTY	3 cut(s)	23, 35, 280
AcuI	CTGAAG	1 cut(s)	191
AcyI	GRCGYC	1 cut(s)	63
AgsI	TTSAA	1 cut(s)	340
AluBI	AGCT	4 cut(s)	120, 149, 205, 226
AluI	AGCT	4 cut(s)	120, 149, 205, 226
Alw21I	GWGCWC	1 cut(s)	228
AlwI	GGATC	1 cut(s)	65
AoxI	GGCC	2 cut(s)	138, 156
ApeKI	GCWGC	2 cut(s)	117, 149
ApoI	RAATTY	3 cut(s)	23, 35, 280
AspLEI	GCGC	1 cut(s)	65
AsuC2I	CCSGG	1 cut(s)	43
AsuHPI	GGTGA	2 cut(s)	80, 337
BanI	GGYRCC	1 cut(s)	62
BanII	GRGCYC	1 cut(s)	228
Bbv12I	GWGCWC	1 cut(s)	228
BbvI	GCAGC	2 cut(s)	129, 136
BceAI	ACGGC	1 cut(s)	125
BcnI	CCSGG	1 cut(s)	43
BfoI	RGCGCY	1 cut(s)	66
BisI	GCNGC	3 cut(s)	61, 118, 150
BlsI	GCNGC	3 cut(s)	62, 119, 151
Bme1390I	CCNGG	1 cut(s)	43
BmiI	GGNNCC	1 cut(s)	64
BmrFI	CCNGG	1 cut(s)	43
BpuEI	CTTGAG	2 cut(s)	231, 242
BpuMI	CCSGG	1 cut(s)	43
BsaHI	GRCGYC	1 cut(s)	63
BsaJI	CCNNGG	1 cut(s)	141
Bse118I	RCCGGY	1 cut(s)	65
BseDI	CCNNGG	1 cut(s)	141
BseGI	GGATG	1 cut(s)	186
BseMII	CTCAG	1 cut(s)	192
BseXI	GCAGC	2 cut(s)	129, 136
Bsh1285I	CGRYCG	1 cut(s)	19
BshFI	GGCC	2 cut(s)	140, 158
BshNI	GGYRCC	1 cut(s)	62
BsiEI	CGRYCG	1 cut(s)	19
BsiHKAI	GWGCWC	1 cut(s)	228
BsiSI	CCGG	3 cut(s)	42, 57, 66
BsnI	GGCC	2 cut(s)	140, 158
Bsp1286I	GDGCHC	1 cut(s)	228
Bsp143I	GATC	2 cut(s)	16, 70
BspACI	CCGC	2 cut(s)	60, 152
BspANI	GGCC	2 cut(s)	140, 158
BspCNI	CTCAG	1 cut(s)	193
BspLI	GGNNCC	1 cut(s)	64
BspPI	GGATC	1 cut(s)	65
BspT107I	GGYRCC	1 cut(s)	62
BsrFI	RCCGGY	1 cut(s)	65
BssAI	RCCGGY	1 cut(s)	65
BssECI	CCNNGG	1 cut(s)	141
BssMI	GATC	2 cut(s)	16, 70
BssNI	GRCGYC	1 cut(s)	63
Bst4CI	ACNGT	1 cut(s)	11
Bst6I	CTCTTC	1 cut(s)	174
BstACI	GRCGYC	1 cut(s)	63
BstC8I	GCNNGC	1 cut(s)	48
BstDEI	CTNAG	2 cut(s)	201, 296
BstDSI	CCRYGG	1 cut(s)	141
BstF5I	GGATG	1 cut(s)	186
BstH2I	RGCGCY	1 cut(s)	66
BstHHI	GCGC	1 cut(s)	65
BstKTI	GATC	2 cut(s)	19, 73
BstMBI	GATC	2 cut(s)	16, 70
BstMCI	CGRYCG	1 cut(s)	19
BstMWI	GCNNNNNNNGC	2 cut(s)	146, 155
BstSCI	CCNGG	1 cut(s)	41
BstV1I	GCAGC	2 cut(s)	129, 136
BsuRI	GGCC	2 cut(s)	140, 158
BtgI	CCRYGG	1 cut(s)	141
BtsCI	GGATG	1 cut(s)	186
Cac8I	GCNNGC	1 cut(s)	48
CfoI	GCGC	1 cut(s)	65
Cfr10I	RCCGGY	1 cut(s)	65
CviJI	RGCY	7 cut(s)	46, 120, 140, 149, 158, 205, 226
CviKI_1	RGCY	7 cut(s)	46, 120, 140, 149, 158, 205, 226
DdeI	CTNAG	2 cut(s)	201, 296
DinI	GGCGCC	1 cut(s)	64
DpnI	GATC	2 cut(s)	18, 72
DpnII	GATC	2 cut(s)	16, 70
Eam1104I	CTCTTC	1 cut(s)	174
EarI	CTCTTC	1 cut(s)	174
Ecl136II	GAGCTC	1 cut(s)	226
Eco24I	GRGCYC	1 cut(s)	228
Eco53kI	GAGCTC	1 cut(s)	226
Eco57I	CTGAAG	1 cut(s)	191
EcoICRI	GAGCTC	1 cut(s)	226
EcoT38I	GRGCYC	1 cut(s)	228
EgeI	GGCGCC	1 cut(s)	64
EheI	GGCGCC	1 cut(s)	64
FaiI	YATR	2 cut(s)	134, 237
Fnu4HI	GCNGC	3 cut(s)	61, 118, 150
FokI	GGATG	1 cut(s)	173
FriOI	GRGCYC	1 cut(s)	228
Fsp4HI	GCNGC	3 cut(s)	61, 118, 150
GlaI	GCGC	1 cut(s)	64
GluI	GCNGC	3 cut(s)	61, 118, 150
HaeII	RGCGCY	1 cut(s)	66
HaeIII	GGCC	2 cut(s)	140, 158
HapII	CCGG	3 cut(s)	42, 57, 66
HhaI	GCGC	1 cut(s)	65
Hin1I	GRCGYC	1 cut(s)	63
Hin6I	GCGC	1 cut(s)	63
HinP1I	GCGC	1 cut(s)	63
HinfI	GANTC	3 cut(s)	217, 241, 336
HpaII	CCGG	3 cut(s)	42, 57, 66
HphI	GGTGA	2 cut(s)	80, 337
Hpy166II	GTNNAC	1 cut(s)	328
Hpy188I	TCNGA	3 cut(s)	21, 191, 210
Hpy188III	TCNNGA	3 cut(s)	221, 248, 310
Hpy8I	GTNNAC	1 cut(s)	328
HpyAV	CCTTC	1 cut(s)	130
HpyCH4III	ACNGT	1 cut(s)	11
HpyF10VI	GCNNNNNNNGC	2 cut(s)	146, 155
HpyF3I	CTNAG	2 cut(s)	201, 296
Hsp92I	GRCGYC	1 cut(s)	63
HspAI	GCGC	1 cut(s)	63
KasI	GGCGCC	1 cut(s)	62
Kzo9I	GATC	2 cut(s)	16, 70
LmnI	GCTCC	1 cut(s)	86
LpnPI	CCDG	7 cut(s)	32, 55, 70, 79, 113, 158, 295
Lsp1109I	GCAGC	2 cut(s)	129, 136
MaeIII	GTNAC	1 cut(s)	11
MalI	GATC	2 cut(s)	18, 72
MboI	GATC	2 cut(s)	16, 70
MboII	GAAGA	1 cut(s)	191
MhlI	GDGCHC	1 cut(s)	228
MluCI	AATT	4 cut(s)	23, 35, 280, 317
Mly113I	GGCGCC	1 cut(s)	63
MlyI	GAGTC	1 cut(s)	250
MnlI	CCTC	3 cut(s)	148, 189, 255
MseI	TTAA	1 cut(s)	165
MspI	CCGG	3 cut(s)	42, 57, 66
MspR9I	CCNGG	1 cut(s)	43
MwoI	GCNNNNNNNGC	2 cut(s)	146, 155
NarI	GGCGCC	1 cut(s)	63
NciI	CCSGG	1 cut(s)	43
NdeII	GATC	2 cut(s)	16, 70
NlaIV	GGNNCC	1 cut(s)	64
PfeI	GAWTC	2 cut(s)	217, 336
PkrI	GCNGC	3 cut(s)	62, 119, 151
Ple19I	CGATCG	1 cut(s)	19
PleI	GAGTC	1 cut(s)	249
PluTI	GGCGCC	1 cut(s)	66
PpsI	GAGTC	1 cut(s)	249
Psp124BI	GAGCTC	1 cut(s)	228
PspN4I	GGNNCC	1 cut(s)	64
PvuI	CGATCG	1 cut(s)	19
SacI	GAGCTC	1 cut(s)	228
SaqAI	TTAA	1 cut(s)	165
SatI	GCNGC	3 cut(s)	61, 118, 150
Sau3AI	GATC	2 cut(s)	16, 70
SchI	GAGTC	1 cut(s)	250
ScrFI	CCNGG	1 cut(s)	43
SduI	GDGCHC	1 cut(s)	228
SetI	ASST	6 cut(s)	122, 132, 151, 177, 207, 228
SfoI	GGCGCC	1 cut(s)	64
SgrAI	CRCCGGYG	1 cut(s)	65
SmlI	CTYRAG	2 cut(s)	221, 246
SmoI	CTYRAG	2 cut(s)	221, 246
Sse9I	AATT	4 cut(s)	23, 35, 280, 317
SsiI	CCGC	2 cut(s)	60, 152
SspDI	GGCGCC	1 cut(s)	62
SstI	GAGCTC	1 cut(s)	228
StyD4I	CCNGG	1 cut(s)	41
TaaI	ACNGT	1 cut(s)	11
TaqI	TCGA	1 cut(s)	228
TasI	AATT	4 cut(s)	23, 35, 280, 317
TauI	GCSGC	1 cut(s)	63
TfiI	GAWTC	2 cut(s)	217, 336
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TseI	GCWGC	2 cut(s)	117, 149
TspDTI	ATGAA	1 cut(s)	149
XapI	RAATTY	3 cut(s)	23, 35, 280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.