Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001142

Physical Location & Seq

Genomic Coordinates Reverse (-)

18332322 .. 18334435

Gene Structure 2114 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g23540.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGAGTGGCGGGGTTCGCACAAGTGTGAAGGGTTTCCTAATCAATGCAAATAGCAATTGGAGAAGTACTGGAATCGAAGCTGCGGATGAGAAACAGAAACCACAAGATGTATCTGAACCTTTGAGGCAAACAGACATAGAGACTGCTGGTCATCATGCGGAGGAAAACCATAATGAGAGACAAATCCCATCCAATTTGACTAGAGGAAACTCTTGCATTGCTGAAGAGCCTGATGATGATGATGATGATGATCCATTGCCTTCTGTAAAGGACCTCCAGCTTCAAGGTGACCCATTAGTGGGACAAGAAATTACAGTATGTGGACACTGCATTAATGGAACATCTCTATGTGATGCGGATCAGTGGCTACGCCATCATCAAGATGGATCTGTTAGTAACATTGATGGAGCGACGAGTCCGGAACATCTTGTTACTGCTGATGATATTGGTGCATGCCTTGCAGTTGAAGTTGTGCCTCTAGATGTCAGGAATAGAAAAGGAAAGCTACAAAAGCTCTTTGCCAATGACCACAAAAATATAAGCTGTGATCCAAAAATGCAAAGCCTGGTAGACAAGATTTTTCACATGGGTCATGGATCATGTAGAGTGTTTCTGTCTGGATATATGGGTGTGTGGGAACCAGGGACACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

218

Amino Acids

23.69

Weight (kDa)

4.85

Isoelectric Point (pI)

55.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IG_AIR9	PF23197	88 - 168	6.4e-08	AIR9 A9 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001142)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08440 AT5G08440 AT5G08440 AT5G23490 AT5G23490 AT5G23490 AT5G23490 AT5G23510 AT5G23510 AT5G23510
fragaria_vesca	FvH4_1g25960 FvH4_1g25960 FvH4_1g25960 FvH4_1g25960 FvH4_1g25960 FvH4_1g25960 FvH4_3g21410 FvH4_7g23540
malus_domestica	MD03G1185400.v1.1 MD04G1186900.v1.1 MD11G1230900.v1.1
prunus_persica	Prupe.4G196300_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1 Prupe.4G288600_v2.0.a1
pyrus_communis	pycom03g16520 pycom03g16530
rosa_chinensis	RchiOBHm_Chr1g0368691 RchiOBHm_Chr3g0485101 RchiOBHm_Chr5g0036791
rosa_laevigata	RLG00000023166 RLG00000027197 RLG00000033721
rosa_multiflora	Rmu_co8159396.1_g000001 Rmu_sc0000399.1_g000002 Rmu_sc0006040.1_g000006 Rmu_sc0006040.1_g000007
rosa_roxburghii	Rroxscaffold_1G00044160 Rroxscaffold_4G00288350 Rroxscaffold_6G00397190
rosa_rugosa	Rorug01G0343700 Rorug03G0216200 Rorug03G0216300
rosa_samantha	Rh3AG266300 Rh3BG301700 Rh3CG300000 Rh3DG295800 Rh5AG250300 Rh5BG252000 Rh5CG284000 Rh5DG260300
rosa_wichuraiana	Rw5G023020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	570
AccIII	TCCGGA	1 cut(s)	418
AciI	CCGC	4 cut(s)	9, 83, 158, 356
AclWI	GGATC	5 cut(s)	245, 366, 394, 542, 604
AcuI	CTGAAG	1 cut(s)	243
AfaI	GTAC	1 cut(s)	67
AfiI	CCNNNNNNNGG	2 cut(s)	298, 299
AgsI	TTSAA	2 cut(s)	284, 467
AhdI	GACNNNNNGTC	1 cut(s)	147
AjnI	CCWGG	2 cut(s)	564, 640
AleI	CACNNNNGTG	1 cut(s)	23
AluBI	AGCT	5 cut(s)	80, 280, 505, 514, 543
AluI	AGCT	5 cut(s)	80, 280, 505, 514, 543
Alw26I	GTCTC	2 cut(s)	134, 172
AlwI	GGATC	5 cut(s)	245, 366, 394, 542, 604
Aor13HI	TCCGGA	1 cut(s)	418
ApeKI	GCWGC	1 cut(s)	80
AseI	ATTAAT	1 cut(s)	333
Asp700I	GAANNNNTTC	1 cut(s)	32
AspS9I	GGNCC	1 cut(s)	271
AsuHPI	GGTGA	1 cut(s)	299
AvaII	GGWCC	1 cut(s)	271
BbvI	GCAGC	1 cut(s)	67
BccI	CCATC	4 cut(s)	196, 377, 381, 398
BciT130I	CCWGG	2 cut(s)	566, 642
BcoDI	GTCTC	2 cut(s)	134, 172
BfaI	CTAG	2 cut(s)	201, 479
BisI	GCNGC	1 cut(s)	81
BlsI	GCNGC	1 cut(s)	82
BmcAI	AGTACT	1 cut(s)	67
Bme1390I	CCNGG	2 cut(s)	566, 642
Bme18I	GGWCC	1 cut(s)	271
BmeRI	GACNNNNNGTC	1 cut(s)	147
BmgT120I	GGNCC	1 cut(s)	271
BmiI	GGNNCC	1 cut(s)	639
BmrFI	CCNGG	2 cut(s)	566, 642
BmsI	GCATC	1 cut(s)	343
BpmI	CTGGAG	1 cut(s)	260
BsaBI	GATNNNNATC	2 cut(s)	249, 357
BsaJI	CCNNGG	1 cut(s)	641
BsaWI	WCCGGW	1 cut(s)	418
Bsc4I	CCNNNNNNNGG	2 cut(s)	298, 299
Bse1I	ACTGG	1 cut(s)	73
Bse3DI	GCAATG	2 cut(s)	216, 254
Bse8I	GATNNNNATC	2 cut(s)	249, 357
BseAI	TCCGGA	1 cut(s)	418
BseBI	CCWGG	2 cut(s)	566, 642
BseDI	CCNNGG	1 cut(s)	641
BseGI	GGATG	2 cut(s)	91, 188
BseJI	GATNNNNATC	2 cut(s)	249, 357
BseLI	CCNNNNNNNGG	2 cut(s)	298, 299
BseMI	GCAATG	2 cut(s)	216, 254
BseNI	ACTGG	1 cut(s)	73
BseXI	GCAGC	1 cut(s)	67
BsiSI	CCGG	1 cut(s)	419
BslFI	GGGAC	1 cut(s)	315
BslI	CCNNNNNNNGG	2 cut(s)	298, 299
BsmAI	GTCTC	2 cut(s)	134, 172
BsmFI	GGGAC	1 cut(s)	315
Bsp13I	TCCGGA	1 cut(s)	418
Bsp143I	GATC	5 cut(s)	250, 358, 386, 547, 596
BspACI	CCGC	4 cut(s)	9, 83, 158, 356
BspEI	TCCGGA	1 cut(s)	418
BspLI	GGNNCC	1 cut(s)	639
BspPI	GGATC	5 cut(s)	245, 366, 394, 542, 604
BspQI	GCTCTTC	1 cut(s)	219
BsrDI	GCAATG	2 cut(s)	216, 254
BsrI	ACTGG	1 cut(s)	73
BssECI	CCNNGG	1 cut(s)	641
BssMI	GATC	5 cut(s)	250, 358, 386, 547, 596
Bst2UI	CCWGG	2 cut(s)	566, 642
Bst4CI	ACNGT	1 cut(s)	316
Bst6I	CTCTTC	1 cut(s)	219
BstAPI	GCANNNNNTGC	1 cut(s)	458
BstC8I	GCNNGC	1 cut(s)	454
BstEII	GGTNACC	1 cut(s)	287
BstF5I	GGATG	2 cut(s)	91, 188
BstKTI	GATC	5 cut(s)	253, 361, 389, 550, 599
BstMAI	GTCTC	2 cut(s)	134, 172
BstMBI	GATC	5 cut(s)	250, 358, 386, 547, 596
BstMWI	GCNNNNNNNGC	3 cut(s)	15, 458, 511
BstNI	CCWGG	2 cut(s)	566, 642
BstNSI	RCATGY	1 cut(s)	456
BstPI	GGTNACC	1 cut(s)	287
BstSCI	CCNGG	2 cut(s)	564, 640
BstV1I	GCAGC	1 cut(s)	67
BstX2I	RGATCY	1 cut(s)	386
BstYI	RGATCY	1 cut(s)	386
BtsCI	GGATG	2 cut(s)	91, 188
BtsI	GCAGTG	1 cut(s)	325
BtsIMutI	CAGTG	2 cut(s)	325, 368
Cac8I	GCNNGC	1 cut(s)	454
Cfr13I	GGNCC	1 cut(s)	271
Csp6I	GTAC	1 cut(s)	66
CviAII	CATG	5 cut(s)	155, 453, 586, 593, 600
CviJI	RGCY	8 cut(s)	80, 229, 280, 367, 505, 514, 543, 564
CviKI_1	RGCY	8 cut(s)	80, 229, 280, 367, 505, 514, 543, 564
CviQI	GTAC	1 cut(s)	66
DpnI	GATC	5 cut(s)	252, 360, 388, 549, 598
DpnII	GATC	5 cut(s)	250, 358, 386, 547, 596
DriI	GACNNNNNGTC	1 cut(s)	147
Eam1104I	CTCTTC	1 cut(s)	219
Eam1105I	GACNNNNNGTC	1 cut(s)	147
EarI	CTCTTC	1 cut(s)	219
Eco47I	GGWCC	1 cut(s)	271
Eco57I	CTGAAG	1 cut(s)	243
Eco91I	GGTNACC	1 cut(s)	287
EcoO109I	RGGNCCY	1 cut(s)	271
EcoO65I	GGTNACC	1 cut(s)	287
EcoRII	CCWGG	2 cut(s)	564, 640
FaeI	CATG	5 cut(s)	158, 456, 589, 596, 603
FaqI	GGGAC	1 cut(s)	315
FatI	CATG	5 cut(s)	154, 452, 585, 592, 599
FauI	CCCGC	1 cut(s)	2
FblI	GTMKAC	1 cut(s)	570
Fnu4HI	GCNGC	1 cut(s)	81
FokI	GGATG	2 cut(s)	98, 175
Fsp4HI	GCNGC	1 cut(s)	81
FspBI	CTAG	2 cut(s)	201, 479
GluI	GCNGC	1 cut(s)	81
GsuI	CTGGAG	1 cut(s)	260
HapII	CCGG	1 cut(s)	419
Hin1II	CATG	5 cut(s)	158, 456, 589, 596, 603
HinfI	GANTC	2 cut(s)	72, 415
HpaII	CCGG	1 cut(s)	419
HphI	GGTGA	1 cut(s)	299
Hpy166II	GTNNAC	2 cut(s)	323, 571
Hpy188I	TCNGA	1 cut(s)	115
Hpy188III	TCNNGA	5 cut(s)	380, 419, 479, 487, 618
Hpy8I	GTNNAC	2 cut(s)	323, 571
Hpy99I	CGWCG	1 cut(s)	415
HpyAV	CCTTC	2 cut(s)	22, 270
HpyCH4III	ACNGT	1 cut(s)	316
HpyCH4V	TGCA	6 cut(s)	47, 216, 330, 452, 461, 559
HpyF10VI	GCNNNNNNNGC	3 cut(s)	15, 458, 511
Hsp92II	CATG	5 cut(s)	158, 456, 589, 596, 603
Kpn2I	TCCGGA	1 cut(s)	418
Kzo9I	GATC	5 cut(s)	250, 358, 386, 547, 596
LguI	GCTCTTC	1 cut(s)	219
LmnI	GCTCC	1 cut(s)	407
Lsp1109I	GCAGC	1 cut(s)	67
LweI	GCATC	1 cut(s)	343
MaeI	CTAG	2 cut(s)	201, 479
MaeIII	GTNAC	3 cut(s)	287, 395, 430
MalI	GATC	5 cut(s)	252, 360, 388, 549, 598
MboI	GATC	5 cut(s)	250, 358, 386, 547, 596
MboII	GAAGA	1 cut(s)	236
MfeI	CAATTG	1 cut(s)	55
MflI	RGATCY	1 cut(s)	386
MluCI	AATT	3 cut(s)	55, 193, 309
MlyI	GAGTC	1 cut(s)	424
MnlI	CCTC	5 cut(s)	117, 154, 197, 284, 486
MroI	TCCGGA	1 cut(s)	418
MroXI	GAANNNNTTC	1 cut(s)	32
MseI	TTAA	1 cut(s)	333
MslI	CAYNNNNRTG	3 cut(s)	23, 346, 381
MspI	CCGG	1 cut(s)	419
MspR9I	CCNGG	2 cut(s)	566, 642
MunI	CAATTG	1 cut(s)	55
MvaI	CCWGG	2 cut(s)	566, 642
MwoI	GCNNNNNNNGC	3 cut(s)	15, 458, 511
NdeII	GATC	5 cut(s)	250, 358, 386, 547, 596
NlaIII	CATG	5 cut(s)	158, 456, 589, 596, 603
NlaIV	GGNNCC	1 cut(s)	639
NmuCI	GTSAC	1 cut(s)	287
NspI	RCATGY	1 cut(s)	456
OliI	CACNNNNGTG	1 cut(s)	23
PaeI	GCATGC	1 cut(s)	456
PciSI	GCTCTTC	1 cut(s)	219
PdmI	GAANNNNTTC	1 cut(s)	32
PfeI	GAWTC	1 cut(s)	72
PkrI	GCNGC	1 cut(s)	82
PleI	GAGTC	1 cut(s)	423
PpsI	GAGTC	1 cut(s)	423
PpuMI	RGGWCCY	1 cut(s)	271
PshBI	ATTAAT	1 cut(s)	333
Psp5II	RGGWCCY	1 cut(s)	271
Psp6I	CCWGG	2 cut(s)	564, 640
PspEI	GGTNACC	1 cut(s)	287
PspGI	CCWGG	2 cut(s)	564, 640
PspN4I	GGNNCC	1 cut(s)	639
PspPI	GGNCC	1 cut(s)	271
PspPPI	RGGWCCY	1 cut(s)	271
PsuI	RGATCY	1 cut(s)	386
RsaI	GTAC	1 cut(s)	67
RsaNI	GTAC	1 cut(s)	66
RseI	CAYNNNNRTG	3 cut(s)	23, 346, 381
SapI	GCTCTTC	1 cut(s)	219
SaqAI	TTAA	1 cut(s)	333
SatI	GCNGC	1 cut(s)	81
Sau3AI	GATC	5 cut(s)	250, 358, 386, 547, 596
Sau96I	GGNCC	1 cut(s)	271
ScaI	AGTACT	1 cut(s)	67
SchI	GAGTC	1 cut(s)	424
ScrFI	CCNGG	2 cut(s)	566, 642
SetI	ASST	8 cut(s)	82, 121, 276, 282, 289, 507, 516, 545
SfaNI	GCATC	1 cut(s)	343
SinI	GGWCC	1 cut(s)	271
SmiMI	CAYNNNNRTG	3 cut(s)	23, 346, 381
SphI	GCATGC	1 cut(s)	456
Sse9I	AATT	3 cut(s)	55, 193, 309
SsiI	CCGC	4 cut(s)	9, 83, 158, 356
SspMI	CTAG	2 cut(s)	201, 479
StyD4I	CCNGG	2 cut(s)	564, 640
TaaI	ACNGT	1 cut(s)	316
TaqI	TCGA	1 cut(s)	75
TasI	AATT	3 cut(s)	55, 193, 309
TatI	WGTACW	1 cut(s)	65
TfiI	GAWTC	1 cut(s)	72
Tru1I	TTAA	1 cut(s)	333
Tru9I	TTAA	1 cut(s)	333
TscAI	CASTG	2 cut(s)	332, 368
TseFI	GTSAC	1 cut(s)	287
TseI	GCWGC	1 cut(s)	80
Tsp45I	GTSAC	1 cut(s)	287
TspRI	CASTG	2 cut(s)	332, 368
VpaK11BI	GGWCC	1 cut(s)	271
VspI	ATTAAT	1 cut(s)	333
XbaI	TCTAGA	1 cut(s)	478
XceI	RCATGY	1 cut(s)	456
XcmI	CCANNNNNNNNNTGG	1 cut(s)	380
XmiI	GTMKAC	1 cut(s)	570
XmnI	GAANNNNTTC	1 cut(s)	32
XspI	CTAG	2 cut(s)	201, 479
ZrmI	AGTACT	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.