Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0003453

Physical Location & Seq

Genomic Coordinates Reverse (-)

2467856 .. 2468356

Gene Structure 501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g04660.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGCTTTCCTAAGGCGTATGTTGGATGGACGAGATCTTGGCATTTTTGTGCTATTGCTATTGCTTAGTTGTAGGTTCAGCCATGGTGTTGAGAGTGATGTAAACTGCTTGACAAGTATAAGAGCAGCATCGGAGGACCCTCTAGACATGTTAAGCTCTTCATGGGATTTCAACAATAACACTGAAGGTTTCATCTGTAACTTTCTGGGAGTGGAGTGTTGGCACCCTCATGAGAGCAGAGTTTTAAATATCAAGCTTGGGGATTTGGGACTCAAAGGCCAGTTTCCTCGCGGAGTAGTGAATTGTACAAGCTTACAAGGCTTAGATCTTTCGAGCAACAACCTTAGTGGACCTATTCCTGAGGATATTGATCATTTGTTCTATTTCATTACATCGCTTGATCTCTCTTCCAACAGCTTCTCATGGACAATTCCCAGGGATCTCTCCAATTGTACTTTTCTGAATGTCCTTAAACTTGACAATAACAAGTTGACGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010941 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0031348 GO:0033612 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0060548 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

167

Amino Acids

18.52

Weight (kDa)

4.89

Isoelectric Point (pI)

40.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003453)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04660 FvH4_2g17431
malus_domestica	MD05G1153200.v1.1 MD10G1147500.v1.1
prunus_persica	Prupe.8G186300_v2.0.a1 Prupe.8G186400_v2.0.a1 Prupe.8G186500_v2.0.a1 Prupe.8G186600_v2.0.a1
pyrus_communis	pycom05g14760 pycom10g12710 pycom10g12740
rosa_chinensis	RchiOBHm_Chr6g0281591 RchiOBHm_Chr6g0281611 RchiOBHm_Chr6g0282141
rosa_laevigata	RLG00000012906 RLG00000012907 RLG00000012959
rosa_multiflora	Rmu_sc0006897.1_g000004
rosa_roxburghii	Rroxscaffold_7G00186470
rosa_rugosa	Rorug06G0142000 Rorug06G0145600 Rorug06G0170000
rosa_samantha	Rh6AG047800 Rh6AG254400 Rh6AG258700 Rh6BG044300 Rh6BG257600 Rh6BG262000 Rh6BG262200 Rh6CG256700 Rh6CG261000 Rh6DG248500 Rh6DG248600 Rh6DG253000
rosa_wichuraiana	Rw6G022090 Rw6G022390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	222
AccII	CGCG	1 cut(s)	291
AciI	CCGC	1 cut(s)	291
AclWI	GGATC	1 cut(s)	447
AcuI	CTGAAG	1 cut(s)	204
AfaI	GTAC	2 cut(s)	307, 454
AflIII	ACRYGT	1 cut(s)	147
AgsI	TTSAA	1 cut(s)	172
AjnI	CCWGG	1 cut(s)	434
AluBI	AGCT	4 cut(s)	156, 256, 312, 417
AluI	AGCT	4 cut(s)	156, 256, 312, 417
AlwI	GGATC	1 cut(s)	447
AoxI	GGCC	1 cut(s)	277
ApeKI	GCWGC	1 cut(s)	125
AspS9I	GGNCC	2 cut(s)	136, 350
AvaII	GGWCC	2 cut(s)	136, 350
AxyI	CCTNAGG	2 cut(s)	11, 360
BanI	GGYRCC	1 cut(s)	222
BbvI	GCAGC	1 cut(s)	137
BccI	CCATC	1 cut(s)	20
BciT130I	CCWGG	1 cut(s)	436
BclI	TGATCA	1 cut(s)	370
BfaI	CTAG	1 cut(s)	143
BglII	AGATCT	2 cut(s)	34, 325
BisI	GCNGC	1 cut(s)	126
BlsI	GCNGC	1 cut(s)	127
Bme1390I	CCNGG	1 cut(s)	436
Bme18I	GGWCC	2 cut(s)	136, 350
BmgT120I	GGNCC	2 cut(s)	136, 350
BmiI	GGNNCC	2 cut(s)	138, 224
BmrFI	CCNGG	1 cut(s)	436
BmsI	GCATC	1 cut(s)	137
BsaBI	GATNNNNATC	1 cut(s)	369
BsaJI	CCNNGG	3 cut(s)	82, 434, 435
Bse1I	ACTGG	1 cut(s)	280
Bse21I	CCTNAGG	2 cut(s)	11, 360
Bse8I	GATNNNNATC	1 cut(s)	369
BseBI	CCWGG	1 cut(s)	436
BseDI	CCNNGG	3 cut(s)	82, 434, 435
BseGI	GGATG	1 cut(s)	31
BseJI	GATNNNNATC	1 cut(s)	369
BseMII	CTCAG	1 cut(s)	351
BseNI	ACTGG	1 cut(s)	280
BseXI	GCAGC	1 cut(s)	137
Bsh1236I	CGCG	1 cut(s)	291
BshFI	GGCC	1 cut(s)	279
BshNI	GGYRCC	1 cut(s)	222
BslFI	GGGAC	1 cut(s)	282
BsmFI	GGGAC	1 cut(s)	282
BsnI	GGCC	1 cut(s)	279
Bsp1407I	TGTACA	1 cut(s)	305
Bsp143I	GATC	5 cut(s)	34, 325, 370, 400, 439
Bsp19I	CCATGG	1 cut(s)	82
BspACI	CCGC	1 cut(s)	291
BspANI	GGCC	1 cut(s)	279
BspCNI	CTCAG	1 cut(s)	352
BspFNI	CGCG	1 cut(s)	291
BspHI	TCATGA	1 cut(s)	229
BspLI	GGNNCC	2 cut(s)	138, 224
BspPI	GGATC	1 cut(s)	447
BspQI	GCTCTTC	1 cut(s)	163
BspT107I	GGYRCC	1 cut(s)	222
BsrGI	TGTACA	1 cut(s)	305
BsrI	ACTGG	1 cut(s)	280
BssECI	CCNNGG	3 cut(s)	82, 434, 435
BssMI	GATC	5 cut(s)	34, 325, 370, 400, 439
BssT1I	CCWWGG	1 cut(s)	82
Bst2UI	CCWGG	1 cut(s)	436
Bst6I	CTCTTC	2 cut(s)	163, 412
BstAUI	TGTACA	1 cut(s)	305
BstDEI	CTNAG	5 cut(s)	11, 65, 322, 344, 360
BstDSI	CCRYGG	1 cut(s)	82
BstF5I	GGATG	1 cut(s)	31
BstFNI	CGCG	1 cut(s)	291
BstKTI	GATC	5 cut(s)	37, 328, 373, 403, 442
BstMBI	GATC	5 cut(s)	34, 325, 370, 400, 439
BstMWI	GCNNNNNNNGC	1 cut(s)	318
BstNI	CCWGG	1 cut(s)	436
BstNSI	RCATGY	1 cut(s)	151
BstSCI	CCNGG	1 cut(s)	434
BstUI	CGCG	1 cut(s)	291
BstV1I	GCAGC	1 cut(s)	137
BstX2I	RGATCY	3 cut(s)	34, 325, 439
BstYI	RGATCY	3 cut(s)	34, 325, 439
Bsu36I	CCTNAGG	2 cut(s)	11, 360
BsuRI	GGCC	1 cut(s)	279
BtgI	CCRYGG	1 cut(s)	82
BtgZI	GCGATG	1 cut(s)	378
BtsCI	GGATG	1 cut(s)	31
BtsIMutI	CAGTG	1 cut(s)	180
CciI	TCATGA	1 cut(s)	229
Cfr13I	GGNCC	2 cut(s)	136, 350
Csp6I	GTAC	2 cut(s)	306, 453
CspCI	CAANNNNNGTGG	2 cut(s)	328, 363
CviAII	CATG	5 cut(s)	83, 148, 162, 230, 423
CviJI	RGCY	8 cut(s)	5, 81, 156, 256, 279, 312, 321, 417
CviKI_1	RGCY	8 cut(s)	5, 81, 156, 256, 279, 312, 321, 417
CviQI	GTAC	2 cut(s)	306, 453
DdeI	CTNAG	5 cut(s)	11, 65, 322, 344, 360
DpnI	GATC	5 cut(s)	36, 327, 372, 402, 441
DpnII	GATC	5 cut(s)	34, 325, 370, 400, 439
DraI	TTTAAA	1 cut(s)	246
Eam1104I	CTCTTC	2 cut(s)	163, 412
EarI	CTCTTC	2 cut(s)	163, 412
Eco130I	CCWWGG	1 cut(s)	82
Eco47I	GGWCC	2 cut(s)	136, 350
Eco57I	CTGAAG	1 cut(s)	204
Eco81I	CCTNAGG	2 cut(s)	11, 360
EcoO109I	RGGNCCY	1 cut(s)	136
EcoRII	CCWGG	1 cut(s)	434
EcoT14I	CCWWGG	1 cut(s)	82
ErhI	CCWWGG	1 cut(s)	82
FaeI	CATG	5 cut(s)	86, 151, 165, 233, 426
FaiI	YATR	7 cut(s)	20, 84, 119, 149, 163, 231, 424
FaqI	GGGAC	1 cut(s)	282
FatI	CATG	5 cut(s)	82, 147, 161, 229, 422
FbaI	TGATCA	1 cut(s)	370
Fnu4HI	GCNGC	1 cut(s)	126
FokI	GGATG	1 cut(s)	38
Fsp4HI	GCNGC	1 cut(s)	126
FspBI	CTAG	1 cut(s)	143
GluI	GCNGC	1 cut(s)	126
HaeIII	GGCC	1 cut(s)	279
Hin1II	CATG	5 cut(s)	86, 151, 165, 233, 426
HincII	GTYRAC	1 cut(s)	492
HindII	GTYRAC	1 cut(s)	492
HindIII	AAGCTT	2 cut(s)	254, 310
HinfI	GANTC	1 cut(s)	270
Hpy166II	GTNNAC	3 cut(s)	103, 350, 492
Hpy188I	TCNGA	2 cut(s)	133, 462
Hpy188III	TCNNGA	3 cut(s)	143, 230, 359
Hpy8I	GTNNAC	3 cut(s)	103, 350, 492
HpyAV	CCTTC	1 cut(s)	179
HpyF10VI	GCNNNNNNNGC	1 cut(s)	318
HpyF3I	CTNAG	5 cut(s)	11, 65, 322, 344, 360
Hsp92II	CATG	5 cut(s)	86, 151, 165, 233, 426
Ksp22I	TGATCA	1 cut(s)	370
Kzo9I	GATC	5 cut(s)	34, 325, 370, 400, 439
LguI	GCTCTTC	1 cut(s)	163
LpnPI	CCDG	5 cut(s)	191, 293, 372, 421, 448
Lsp1109I	GCAGC	1 cut(s)	137
LweI	GCATC	1 cut(s)	137
MaeI	CTAG	1 cut(s)	143
MaeIII	GTNAC	1 cut(s)	197
MalI	GATC	5 cut(s)	36, 327, 372, 402, 441
MboI	GATC	5 cut(s)	34, 325, 370, 400, 439
MboII	GAAGA	2 cut(s)	150, 399
MfeI	CAATTG	1 cut(s)	448
MflI	RGATCY	3 cut(s)	34, 325, 439
MluCI	AATT	3 cut(s)	301, 429, 448
MlyI	GAGTC	1 cut(s)	264
MmeI	TCCRAC	1 cut(s)	435
MnlI	CCTC	5 cut(s)	127, 150, 237, 297, 355
MseI	TTAA	4 cut(s)	152, 245, 471, 499
MslI	CAYNNNNRTG	2 cut(s)	47, 228
MspR9I	CCNGG	1 cut(s)	436
MunI	CAATTG	1 cut(s)	448
MvaI	CCWGG	1 cut(s)	436
MvnI	CGCG	1 cut(s)	291
MwoI	GCNNNNNNNGC	1 cut(s)	318
NcoI	CCATGG	1 cut(s)	82
NdeII	GATC	5 cut(s)	34, 325, 370, 400, 439
NlaIII	CATG	5 cut(s)	86, 151, 165, 233, 426
NlaIV	GGNNCC	2 cut(s)	138, 224
NspI	RCATGY	1 cut(s)	151
PagI	TCATGA	1 cut(s)	229
PasI	CCCWGGG	1 cut(s)	435
PciI	ACATGT	1 cut(s)	147
PciSI	GCTCTTC	1 cut(s)	163
PkrI	GCNGC	1 cut(s)	127
PleI	GAGTC	1 cut(s)	264
PpsI	GAGTC	1 cut(s)	264
PpuMI	RGGWCCY	1 cut(s)	136
PscI	ACATGT	1 cut(s)	147
Psp5II	RGGWCCY	1 cut(s)	136
Psp6I	CCWGG	1 cut(s)	434
PspGI	CCWGG	1 cut(s)	434
PspN4I	GGNNCC	2 cut(s)	138, 224
PspPI	GGNCC	2 cut(s)	136, 350
PspPPI	RGGWCCY	1 cut(s)	136
PsuI	RGATCY	3 cut(s)	34, 325, 439
RsaI	GTAC	2 cut(s)	307, 454
RsaNI	GTAC	2 cut(s)	306, 453
RseI	CAYNNNNRTG	2 cut(s)	47, 228
SapI	GCTCTTC	1 cut(s)	163
SaqAI	TTAA	4 cut(s)	152, 245, 471, 499
SatI	GCNGC	1 cut(s)	126
Sau3AI	GATC	5 cut(s)	34, 325, 370, 400, 439
Sau96I	GGNCC	2 cut(s)	136, 350
SchI	GAGTC	1 cut(s)	264
ScrFI	CCNGG	1 cut(s)	436
SetI	ASST	8 cut(s)	77, 158, 190, 258, 314, 345, 355, 419
SfaNI	GCATC	1 cut(s)	137
SinI	GGWCC	2 cut(s)	136, 350
SmiMI	CAYNNNNRTG	2 cut(s)	47, 228
Sse9I	AATT	3 cut(s)	301, 429, 448
SsiI	CCGC	1 cut(s)	291
SspMI	CTAG	1 cut(s)	143
StyD4I	CCNGG	1 cut(s)	434
StyI	CCWWGG	1 cut(s)	82
TaqI	TCGA	1 cut(s)	332
TasI	AATT	3 cut(s)	301, 429, 448
TatI	WGTACW	2 cut(s)	305, 452
Tru1I	TTAA	4 cut(s)	152, 245, 471, 499
Tru9I	TTAA	4 cut(s)	152, 245, 471, 499
TscAI	CASTG	1 cut(s)	187
TseI	GCWGC	1 cut(s)	125
TspDTI	ATGAA	3 cut(s)	150, 181, 376
TspRI	CASTG	1 cut(s)	187
VpaK11BI	GGWCC	2 cut(s)	136, 350
XbaI	TCTAGA	1 cut(s)	142
XceI	RCATGY	1 cut(s)	151
XspI	CTAG	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.