Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003453

Physical Location & Seq

Genomic Coordinates Forward (+)

23723638 .. 23734787

Gene Structure 11150 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012907

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGGACAGCGAATCAACACCGGGAGTAGAGTTGGGCAAGCTGCAAGCCATGCTTTTGGCTACAATCCACCTACAGGCGAAGATAAGGAACAACCTCTTGAGGTTGAAGTTCTCGAACGGGTGGAACTGGAGGCTCAGAAAGAACCGGCTGTAGTCCAGTGCCATCCGATCGAAGGTCAGAGCCCTACAAGCACTGAAGAAGTGGCCATTCATGCTAAGGAGGTTCTGGCGAAGGTCATCTTGACCAAGACTTCGCAGATGCGGCCAACAGTGACCATGCCCCATATGTGCACAAGATTGAGGTTGAAGGTGGTCACAAACAAGTTGCCGAAGAATTGGTCCCTGTTCCACCTCCAGTGGTTCCGATTCATTTATGGTGTCGAGAGTGATATCAACAGCCTAAGAAGTATAAAAGCTAATGATACGGAAGGTTTCATATGTAACTCTCTGGGAATCGGGCATTGGCACCCTCATGAGAACAAAGTAAGCTTGCGGATTTGGGACTCAAAAGCCAGTTTCCTCGTGGCCTTCTCAGGGGAAATTCTGAATACCATTTCCAACTGTACTTTCCTGAATGTCCTGAAGCTTGACAACAATCAGTTCTCTAGTCAGATTCCTGCTAAACTTGGTCAGTACAGTAGGATTAAAACATTTAGCGTGGCCAACAATCAACTGTCTGGGCCAGTCACCACCTTCAACATTATGAATGATGCCATCGGAGCAGACAACTATTCAAACAATAGGAAACTCTGTGGTGGTCCTTTGAAGAATTGCCGTCATCATCTCAGAACAAGTCTTCAAATGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010941 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0031348 GO:0033612 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0060548 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

270

Amino Acids

30.13

Weight (kDa)

9.03

Isoelectric Point (pI)

38.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003453)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04660 FvH4_2g17431
malus_domestica	MD05G1153200.v1.1 MD10G1147500.v1.1
prunus_persica	Prupe.8G186300_v2.0.a1 Prupe.8G186400_v2.0.a1 Prupe.8G186500_v2.0.a1 Prupe.8G186600_v2.0.a1
pyrus_communis	pycom05g14760 pycom10g12710 pycom10g12740
rosa_chinensis	RchiOBHm_Chr6g0281591 RchiOBHm_Chr6g0281611 RchiOBHm_Chr6g0282141
rosa_laevigata	RLG00000012906 RLG00000012907 RLG00000012959
rosa_multiflora	Rmu_sc0006897.1_g000004
rosa_roxburghii	Rroxscaffold_7G00186470
rosa_rugosa	Rorug06G0142000 Rorug06G0145600 Rorug06G0170000
rosa_samantha	Rh6AG047800 Rh6AG254400 Rh6AG258700 Rh6BG044300 Rh6BG257600 Rh6BG262000 Rh6BG262200 Rh6CG256700 Rh6CG261000 Rh6DG248500 Rh6DG248600 Rh6DG253000
rosa_wichuraiana	Rw6G022090 Rw6G022390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	465
AciI	CCGC	2 cut(s)	262, 493
AcoI	YGGCCR	3 cut(s)	204, 263, 660
AcsI	RAATTY	1 cut(s)	540
AcuI	CTGAAG	2 cut(s)	216, 602
AfaI	GTAC	2 cut(s)	565, 635
AfiI	CCNNNNNNNGG	3 cut(s)	74, 173, 534
AgsI	TTSAA	6 cut(s)	107, 307, 697, 735, 766, 800
AjuI	GAANNNNNNNTTGG	4 cut(s)	445, 477, 551, 583
AluBI	AGCT	4 cut(s)	41, 416, 489, 586
AluI	AGCT	4 cut(s)	41, 416, 489, 586
Alw21I	GWGCWC	1 cut(s)	293
Alw44I	GTGCAC	1 cut(s)	289
AoxI	GGCC	5 cut(s)	204, 263, 525, 660, 680
ApaLI	GTGCAC	1 cut(s)	289
ApeKI	GCWGC	1 cut(s)	41
ApoI	RAATTY	1 cut(s)	540
ArsI	GACNNNNNNTTYG	4 cut(s)	235, 267, 323, 355
AspS9I	GGNCC	3 cut(s)	339, 680, 758
AsuC2I	CCSGG	1 cut(s)	22
AsuHPI	GGTGA	1 cut(s)	679
AvaII	GGWCC	2 cut(s)	339, 758
BaeGI	GKGCMC	1 cut(s)	293
BalI	TGGCCA	2 cut(s)	206, 662
BanI	GGYRCC	1 cut(s)	465
BanII	GRGCYC	1 cut(s)	185
BauI	CACGAG	1 cut(s)	521
BbsI	GAAGAC	1 cut(s)	788
Bbv12I	GWGCWC	1 cut(s)	293
BbvI	GCAGC	1 cut(s)	28
BccI	CCATC	2 cut(s)	171, 722
BceAI	ACGGC	1 cut(s)	759
BcnI	CCSGG	1 cut(s)	22
BfaI	CTAG	1 cut(s)	606
BfmI	CTRYAG	2 cut(s)	72, 150
BisI	GCNGC	2 cut(s)	42, 263
BlsI	GCNGC	2 cut(s)	43, 264
Bme1390I	CCNGG	1 cut(s)	22
Bme18I	GGWCC	2 cut(s)	339, 758
BmgT120I	GGNCC	3 cut(s)	339, 680, 758
BmiI	GGNNCC	3 cut(s)	341, 362, 467
BmrFI	CCNGG	1 cut(s)	22
BmsI	GCATC	2 cut(s)	249, 700
BpiI	GAAGAC	1 cut(s)	788
BpmI	CTGGAG	2 cut(s)	149, 338
Bpu10I	CCTNAGC	1 cut(s)	216
BpuEI	CTTGAG	1 cut(s)	119
BpuMI	CCSGG	1 cut(s)	22
Bsc4I	CCNNNNNNNGG	3 cut(s)	74, 173, 534
Bse118I	RCCGGY	1 cut(s)	145
Bse1I	ACTGG	5 cut(s)	132, 157, 355, 513, 683
BseGI	GGATG	1 cut(s)	163
BseLI	CCNNNNNNNGG	3 cut(s)	74, 173, 534
BseMII	CTCAG	3 cut(s)	149, 546, 799
BseNI	ACTGG	5 cut(s)	132, 157, 355, 513, 683
BseSI	GKGCMC	1 cut(s)	293
BseXI	GCAGC	1 cut(s)	28
Bsh1285I	CGRYCG	1 cut(s)	171
BshFI	GGCC	5 cut(s)	206, 265, 527, 662, 682
BshNI	GGYRCC	1 cut(s)	465
BsiEI	CGRYCG	1 cut(s)	171
BsiHKAI	GWGCWC	1 cut(s)	293
BsiSI	CCGG	2 cut(s)	21, 146
BslFI	GGGAC	3 cut(s)	18, 325, 515
BslI	CCNNNNNNNGG	3 cut(s)	74, 173, 534
BsmFI	GGGAC	3 cut(s)	18, 325, 515
BsnI	GGCC	5 cut(s)	206, 265, 527, 662, 682
Bsp1286I	GDGCHC	2 cut(s)	185, 293
Bsp143I	GATC	1 cut(s)	168
BspACI	CCGC	2 cut(s)	262, 493
BspANI	GGCC	5 cut(s)	206, 265, 527, 662, 682
BspCNI	CTCAG	3 cut(s)	148, 545, 798
BspHI	TCATGA	1 cut(s)	472
BspLI	GGNNCC	3 cut(s)	341, 362, 467
BspT107I	GGYRCC	1 cut(s)	465
BsrFI	RCCGGY	1 cut(s)	145
BsrI	ACTGG	5 cut(s)	132, 157, 355, 513, 683
BssAI	RCCGGY	1 cut(s)	145
BssMI	GATC	1 cut(s)	168
BssSI	CACGAG	1 cut(s)	521
Bst2BI	CACGAG	1 cut(s)	521
Bst4CI	ACNGT	4 cut(s)	271, 563, 638, 675
BstAPI	GCANNNNNTGC	1 cut(s)	50
BstC8I	GCNNGC	3 cut(s)	39, 46, 491
BstDEI	CTNAG	5 cut(s)	135, 216, 401, 532, 785
BstF5I	GGATG	1 cut(s)	163
BstKTI	GATC	1 cut(s)	171
BstMBI	GATC	1 cut(s)	168
BstMCI	CGRYCG	1 cut(s)	171
BstMWI	GCNNNNNNNGC	5 cut(s)	50, 189, 212, 262, 719
BstSCI	CCNGG	1 cut(s)	20
BstSFI	CTRYAG	2 cut(s)	72, 150
BstSLI	GKGCMC	1 cut(s)	293
BstV1I	GCAGC	1 cut(s)	28
BstV2I	GAAGAC	1 cut(s)	788
BstXI	CCANNNNNNTGG	1 cut(s)	56
BsuRI	GGCC	5 cut(s)	206, 265, 527, 662, 682
BtsCI	GGATG	1 cut(s)	163
BtsIMutI	CAGTG	4 cut(s)	164, 192, 276, 362
Cac8I	GCNNGC	3 cut(s)	39, 46, 491
CciI	TCATGA	1 cut(s)	472
Cfr10I	RCCGGY	1 cut(s)	145
Cfr13I	GGNCC	3 cut(s)	339, 680, 758
Csp6I	GTAC	2 cut(s)	564, 634
CviAII	CATG	4 cut(s)	50, 212, 277, 473
CviQI	GTAC	2 cut(s)	564, 634
DdeI	CTNAG	5 cut(s)	135, 216, 401, 532, 785
DpnI	GATC	1 cut(s)	170
DpnII	GATC	1 cut(s)	168
EaeI	YGGCCR	3 cut(s)	204, 263, 660
Eco24I	GRGCYC	1 cut(s)	185
Eco32I	GATATC	1 cut(s)	391
Eco47I	GGWCC	2 cut(s)	339, 758
Eco57I	CTGAAG	2 cut(s)	216, 602
EcoRV	GATATC	1 cut(s)	391
EcoT38I	GRGCYC	1 cut(s)	185
FaeI	CATG	4 cut(s)	53, 215, 280, 476
FalI	AAGNNNNNCTT	4 cut(s)	37, 69, 224, 256
FaqI	GGGAC	3 cut(s)	18, 325, 515
FatI	CATG	4 cut(s)	49, 211, 276, 472
FauNDI	CATATG	2 cut(s)	285, 437
Fnu4HI	GCNGC	2 cut(s)	42, 263
FokI	GGATG	1 cut(s)	150
FriOI	GRGCYC	1 cut(s)	185
Fsp4HI	GCNGC	2 cut(s)	42, 263
FspBI	CTAG	1 cut(s)	606
GluI	GCNGC	2 cut(s)	42, 263
GsuI	CTGGAG	2 cut(s)	149, 338
HaeIII	GGCC	5 cut(s)	206, 265, 527, 662, 682
HapII	CCGG	2 cut(s)	21, 146
Hin1II	CATG	4 cut(s)	53, 215, 280, 476
HindIII	AAGCTT	2 cut(s)	487, 584
HinfI	GANTC	5 cut(s)	12, 366, 453, 503, 613
HpaII	CCGG	2 cut(s)	21, 146
HphI	GGTGA	1 cut(s)	679
Hpy166II	GTNNAC	1 cut(s)	291
Hpy188I	TCNGA	8 cut(s)	138, 168, 180, 365, 546, 612, 719, 788
Hpy188III	TCNNGA	7 cut(s)	98, 113, 241, 382, 473, 571, 580
Hpy8I	GTNNAC	1 cut(s)	291
HpyAV	CCTTC	6 cut(s)	167, 226, 301, 422, 538, 703
HpyCH4III	ACNGT	4 cut(s)	271, 563, 638, 675
HpyCH4V	TGCA	2 cut(s)	44, 291
HpyF10VI	GCNNNNNNNGC	5 cut(s)	50, 189, 212, 262, 719
HpyF3I	CTNAG	5 cut(s)	135, 216, 401, 532, 785
Hsp92II	CATG	4 cut(s)	53, 215, 280, 476
Kzo9I	GATC	1 cut(s)	168
LmnI	GCTCC	1 cut(s)	719
Lsp1109I	GCAGC	1 cut(s)	28
LweI	GCATC	2 cut(s)	249, 700
MaeI	CTAG	1 cut(s)	606
MaeIII	GTNAC	4 cut(s)	271, 313, 440, 685
MalI	GATC	1 cut(s)	170
MboI	GATC	1 cut(s)	168
MboII	GAAGA	5 cut(s)	92, 209, 343, 778, 788
MhlI	GDGCHC	2 cut(s)	185, 293
MlsI	TGGCCA	2 cut(s)	206, 662
MluCI	AATT	3 cut(s)	334, 540, 769
MluNI	TGGCCA	2 cut(s)	206, 662
MlyI	GAGTC	1 cut(s)	497
MmeI	TCCRAC	1 cut(s)	582
MnlI	CCTC	8 cut(s)	94, 105, 124, 214, 294, 362, 480, 530
Mox20I	TGGCCA	2 cut(s)	206, 662
MscI	TGGCCA	2 cut(s)	206, 662
MseI	TTAA	1 cut(s)	645
MslI	CAYNNNNRTG	1 cut(s)	471
Msp20I	TGGCCA	2 cut(s)	206, 662
MspI	CCGG	2 cut(s)	21, 146
MspR9I	CCNGG	1 cut(s)	22
MwoI	GCNNNNNNNGC	5 cut(s)	50, 189, 212, 262, 719
NciI	CCSGG	1 cut(s)	22
NdeI	CATATG	2 cut(s)	285, 437
NdeII	GATC	1 cut(s)	168
NlaIII	CATG	4 cut(s)	53, 215, 280, 476
NlaIV	GGNNCC	3 cut(s)	341, 362, 467
NmuCI	GTSAC	3 cut(s)	271, 313, 685
PagI	TCATGA	1 cut(s)	472
PfeI	GAWTC	4 cut(s)	12, 366, 453, 613
PkrI	GCNGC	2 cut(s)	43, 264
Ple19I	CGATCG	1 cut(s)	171
PleI	GAGTC	1 cut(s)	497
PpsI	GAGTC	1 cut(s)	497
PspN4I	GGNNCC	3 cut(s)	341, 362, 467
PspPI	GGNCC	3 cut(s)	339, 680, 758
PvuI	CGATCG	1 cut(s)	171
RsaI	GTAC	2 cut(s)	565, 635
RsaNI	GTAC	2 cut(s)	564, 634
RseI	CAYNNNNRTG	1 cut(s)	471
SaqAI	TTAA	1 cut(s)	645
SatI	GCNGC	2 cut(s)	42, 263
Sau3AI	GATC	1 cut(s)	168
Sau96I	GGNCC	3 cut(s)	339, 680, 758
SchI	GAGTC	1 cut(s)	497
ScrFI	CCNGG	1 cut(s)	22
SduI	GDGCHC	2 cut(s)	185, 293
SfaNI	GCATC	2 cut(s)	249, 700
SfcI	CTRYAG	2 cut(s)	72, 150
SinI	GGWCC	2 cut(s)	339, 758
SmiMI	CAYNNNNRTG	1 cut(s)	471
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
Sse9I	AATT	3 cut(s)	334, 540, 769
SsiI	CCGC	2 cut(s)	262, 493
SspMI	CTAG	1 cut(s)	606
StyD4I	CCNGG	1 cut(s)	20
TaaI	ACNGT	4 cut(s)	271, 563, 638, 675
TaqI	TCGA	3 cut(s)	114, 171, 381
TasI	AATT	3 cut(s)	334, 540, 769
TatI	WGTACW	2 cut(s)	563, 633
TauI	GCSGC	1 cut(s)	265
TfiI	GAWTC	4 cut(s)	12, 366, 453, 613
Tru1I	TTAA	1 cut(s)	645
Tru9I	TTAA	1 cut(s)	645
TscAI	CASTG	4 cut(s)	164, 199, 276, 362
TseFI	GTSAC	3 cut(s)	271, 313, 685
TseI	GCWGC	1 cut(s)	41
Tsp45I	GTSAC	3 cut(s)	271, 313, 685
TspDTI	ATGAA	4 cut(s)	200, 358, 424, 719
TspGWI	ACGGA	1 cut(s)	440
TspRI	CASTG	4 cut(s)	164, 199, 276, 362
VneI	GTGCAC	1 cut(s)	289
VpaK11BI	GGWCC	2 cut(s)	339, 758
XapI	RAATTY	1 cut(s)	540
XcmI	CCANNNNNNNNNTGG	1 cut(s)	520
XspI	CTAG	1 cut(s)	606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.