Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003453

Physical Location & Seq

Genomic Coordinates Reverse (-)

47705512 .. 47706856

Gene Structure 1345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG262200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1069 bp

ATGGCTTTCTTAATGCGTATGTTGAATGGGCGAGATCTTGGCATTTTTTTGCTCTTGTTATTGTTTAGTTGTAGGTTCAGCCATGGTGTTGAGAGTGATATAAACTGCTTGAAAAGTATAAAAGCAACATTGCAGGACCCTTTAGGCATGTTAACCCCTTCATGGGATTTTAACAATGACACCGAAGGTTTCATATGTAACTTTCTGGGAATCGAGTGTTGGCACCCTCATGAGAGCAAAGTTTTAAACATCAAGCTTGTGGATTTGGGTCTCAAAGGCCAGTTTCCTCGCGGAGTAAAGAATTGTACAAGCTTAACAGGCTTAGATCTTTCAGGCAACAACCTCAGTGGAGCTATTCCTGGTGATATTGATCATTTGATCTATTACATTACATCGCTTGATCTCTCGTCCAACAGCTTCTCAGGGACAATTCCCAAGAGTATCTCCAATATTACTTTTCTCAATTTTCTTAAACTTGACAACAACAAGTTAACGGGTCAGATTCCTGCGGAACTTGGTCAGCTCAATAGGCTTAAAACATTTAGCGTGGCCAACAATCAACTGTCTGGGCCAGTCCCCAACTTCAACACTGGCACAAAAACTTTGGACTATGCAGGCAATCCTGGACTTTGTGGTGGTACTTTGGGAAGTTGCCAGGCAGCTGCAAAGAAGTCTAACAGTGTAGTCATAGTGGCAGCAGGTGTCGGAGGTGCAACTTTTGCAGCATTAGTTGTGATTATTGGTTTGTTCTTCTTCATGCGTAGAGTGTCTGCAAGGAAGAAGGAAGAGGACCCTGAAGGCAACAAATGGGCAAGAAGTTTGAAGGGAACTAAAGGAATCAAGGTTTCCATGTTCAAGAAGTCGGTTTCTAAAATGAGACTGAGTGATCTCATGAAGGCTACCAACAATTTCTGCAAAGACAATATCATTGGCTCAGGAAGAACTGGAACTGTTTACAAAGCAGTGCTTGATGATGGCACCTCACTTATGGTCAAGAGGCTGCAGGAATCTCAACACTCTGAGAAAGAGTTTCTGTCTGAGATGTCTACTCTGGGTAGTGTAGAACACC

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010941 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0031348 GO:0033612 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0060548 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

356

Amino Acids

38.65

Weight (kDa)

9.11

Isoelectric Point (pI)

26.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003453)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04660 FvH4_2g17431
malus_domestica	MD05G1153200.v1.1 MD10G1147500.v1.1
prunus_persica	Prupe.8G186300_v2.0.a1 Prupe.8G186400_v2.0.a1 Prupe.8G186500_v2.0.a1 Prupe.8G186600_v2.0.a1
pyrus_communis	pycom05g14760 pycom10g12710 pycom10g12740
rosa_chinensis	RchiOBHm_Chr6g0281591 RchiOBHm_Chr6g0281611 RchiOBHm_Chr6g0282141
rosa_laevigata	RLG00000012906 RLG00000012907 RLG00000012959
rosa_multiflora	Rmu_sc0006897.1_g000004
rosa_roxburghii	Rroxscaffold_7G00186470
rosa_rugosa	Rorug06G0142000 Rorug06G0145600 Rorug06G0170000
rosa_samantha	Rh6AG047800 Rh6AG254400 Rh6AG258700 Rh6BG044300 Rh6BG257600 Rh6BG262000 Rh6BG262200 Rh6CG256700 Rh6CG261000 Rh6DG248500 Rh6DG248600 Rh6DG253000
rosa_wichuraiana	Rw6G022090 Rw6G022390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	689
Acc36I	ACCTGC	1 cut(s)	689
AccB1I	GGYRCC	2 cut(s)	222, 977
AccI	GTMKAC	1 cut(s)	1046
AccII	CGCG	1 cut(s)	291
AciI	CCGC	2 cut(s)	291, 509
AcoI	YGGCCR	1 cut(s)	549
AcuI	CTGAAG	1 cut(s)	816
AfaI	GTAC	2 cut(s)	307, 640
AfiI	CCNNNNNNNGG	2 cut(s)	162, 163
AgsI	TTSAA	5 cut(s)	25, 112, 586, 823, 856
AjnI	CCWGG	3 cut(s)	358, 622, 654
AjuI	GAANNNNNNNTTGG	2 cut(s)	202, 234
AluBI	AGCT	6 cut(s)	256, 312, 353, 417, 523, 662
AluI	AGCT	6 cut(s)	256, 312, 353, 417, 523, 662
Alw26I	GTCTC	2 cut(s)	275, 871
AoxI	GGCC	3 cut(s)	277, 549, 569
ApeKI	GCWGC	5 cut(s)	659, 662, 695, 722, 1000
AspS9I	GGNCC	3 cut(s)	136, 569, 790
AsuHPI	GGTGA	1 cut(s)	374
AvaII	GGWCC	2 cut(s)	136, 790
BalI	TGGCCA	1 cut(s)	551
BanI	GGYRCC	2 cut(s)	222, 977
BbvI	GCAGC	5 cut(s)	649, 671, 707, 734, 987
BccI	CCATC	1 cut(s)	968
BciT130I	CCWGG	3 cut(s)	360, 624, 656
BclI	TGATCA	1 cut(s)	370
BcoDI	GTCTC	2 cut(s)	275, 871
BfmI	CTRYAG	1 cut(s)	1001
BfuAI	ACCTGC	1 cut(s)	689
BglII	AGATCT	2 cut(s)	34, 325
BisI	GCNGC	5 cut(s)	660, 663, 696, 723, 1001
BlsI	GCNGC	5 cut(s)	661, 664, 697, 724, 1002
Bme1390I	CCNGG	3 cut(s)	360, 624, 656
Bme18I	GGWCC	2 cut(s)	136, 790
BmgT120I	GGNCC	3 cut(s)	136, 569, 790
BmiI	GGNNCC	4 cut(s)	138, 224, 792, 979
BmrFI	CCNGG	3 cut(s)	360, 624, 656
Bpu10I	CCTNAGC	1 cut(s)	934
BsaBI	GATNNNNATC	1 cut(s)	369
BsaI	GGTCTC	1 cut(s)	275
BsaJI	CCNNGG	1 cut(s)	82
Bsc4I	CCNNNNNNNGG	2 cut(s)	162, 163
Bse1I	ACTGG	4 cut(s)	280, 572, 595, 949
Bse3DI	GCAATG	1 cut(s)	128
Bse8I	GATNNNNATC	1 cut(s)	369
BseBI	CCWGG	3 cut(s)	360, 624, 656
BseDI	CCNNGG	1 cut(s)	82
BseJI	GATNNNNATC	1 cut(s)	369
BseLI	CCNNNNNNNGG	2 cut(s)	162, 163
BseMI	GCAATG	1 cut(s)	128
BseMII	CTCAG	6 cut(s)	358, 435, 872, 948, 1011, 1029
BseNI	ACTGG	4 cut(s)	280, 572, 595, 949
BseXI	GCAGC	5 cut(s)	649, 671, 707, 734, 987
Bsh1236I	CGCG	1 cut(s)	291
BshFI	GGCC	3 cut(s)	279, 551, 571
BshNI	GGYRCC	2 cut(s)	222, 977
BslFI	GGGAC	2 cut(s)	439, 560
BslI	CCNNNNNNNGG	2 cut(s)	162, 163
BsmAI	GTCTC	2 cut(s)	275, 871
BsmFI	GGGAC	2 cut(s)	439, 560
BsnI	GGCC	3 cut(s)	279, 551, 571
Bso31I	GGTCTC	1 cut(s)	275
Bsp1407I	TGTACA	1 cut(s)	305
Bsp143I	GATC	6 cut(s)	34, 325, 370, 378, 400, 886
Bsp19I	CCATGG	1 cut(s)	82
BspACI	CCGC	2 cut(s)	291, 509
BspANI	GGCC	3 cut(s)	279, 551, 571
BspCNI	CTCAG	6 cut(s)	357, 434, 873, 947, 1012, 1030
BspFNI	CGCG	1 cut(s)	291
BspHI	TCATGA	2 cut(s)	229, 891
BspLI	GGNNCC	4 cut(s)	138, 224, 792, 979
BspMAI	CTGCAG	1 cut(s)	1005
BspMI	ACCTGC	1 cut(s)	689
BspT107I	GGYRCC	2 cut(s)	222, 977
BspTNI	GGTCTC	1 cut(s)	275
BsrDI	GCAATG	1 cut(s)	128
BsrGI	TGTACA	1 cut(s)	305
BsrI	ACTGG	4 cut(s)	280, 572, 595, 949
BssECI	CCNNGG	1 cut(s)	82
BssMI	GATC	6 cut(s)	34, 325, 370, 378, 400, 886
BssT1I	CCWWGG	1 cut(s)	82
Bst2UI	CCWGG	3 cut(s)	360, 624, 656
Bst4CI	ACNGT	3 cut(s)	564, 680, 952
Bst6I	CTCTTC	1 cut(s)	780
BstAPI	GCANNNNNTGC	1 cut(s)	719
BstAUI	TGTACA	1 cut(s)	305
BstC8I	GCNNGC	1 cut(s)	616
BstDEI	CTNAG	7 cut(s)	322, 344, 421, 881, 934, 1020, 1038
BstDSI	CCRYGG	1 cut(s)	82
BstFNI	CGCG	1 cut(s)	291
BstKTI	GATC	6 cut(s)	37, 328, 373, 381, 403, 889
BstMAI	GTCTC	2 cut(s)	275, 871
BstMBI	GATC	6 cut(s)	34, 325, 370, 378, 400, 886
BstMWI	GCNNNNNNNGC	3 cut(s)	318, 529, 719
BstNI	CCWGG	3 cut(s)	360, 624, 656
BstNSI	RCATGY	1 cut(s)	151
BstSCI	CCNGG	3 cut(s)	358, 622, 654
BstSFI	CTRYAG	1 cut(s)	1001
BstUI	CGCG	1 cut(s)	291
BstV1I	GCAGC	5 cut(s)	649, 671, 707, 734, 987
BstX2I	RGATCY	2 cut(s)	34, 325
BstYI	RGATCY	2 cut(s)	34, 325
BsuRI	GGCC	3 cut(s)	279, 551, 571
BtgI	CCRYGG	1 cut(s)	82
BtgZI	GCGATG	1 cut(s)	378
BtsI	GCAGTG	1 cut(s)	969
BtsIMutI	CAGTG	4 cut(s)	352, 588, 685, 969
BveI	ACCTGC	1 cut(s)	689
Cac8I	GCNNGC	1 cut(s)	616
CciI	TCATGA	2 cut(s)	229, 891
Cfr13I	GGNCC	3 cut(s)	136, 569, 790
Csp6I	GTAC	2 cut(s)	306, 639
CspCI	CAANNNNNGTGG	2 cut(s)	328, 363
CviAII	CATG	7 cut(s)	83, 148, 162, 230, 757, 850, 892
CviQI	GTAC	2 cut(s)	306, 639
DdeI	CTNAG	7 cut(s)	322, 344, 421, 881, 934, 1020, 1038
DpnI	GATC	6 cut(s)	36, 327, 372, 380, 402, 888
DpnII	GATC	6 cut(s)	34, 325, 370, 378, 400, 886
DraI	TTTAAA	1 cut(s)	246
EaeI	YGGCCR	1 cut(s)	549
Eam1104I	CTCTTC	1 cut(s)	780
EarI	CTCTTC	1 cut(s)	780
Eco130I	CCWWGG	1 cut(s)	82
Eco31I	GGTCTC	1 cut(s)	275
Eco47I	GGWCC	2 cut(s)	136, 790
Eco57I	CTGAAG	1 cut(s)	816
EcoO109I	RGGNCCY	2 cut(s)	136, 790
EcoRII	CCWGG	3 cut(s)	358, 622, 654
EcoT14I	CCWWGG	1 cut(s)	82
ErhI	CCWWGG	1 cut(s)	82
FaeI	CATG	7 cut(s)	86, 151, 165, 233, 760, 853, 895
FalI	AAGNNNNNCTT	2 cut(s)	951, 983
FaqI	GGGAC	2 cut(s)	439, 560
FatI	CATG	7 cut(s)	82, 147, 161, 229, 756, 849, 891
FauNDI	CATATG	1 cut(s)	194
FbaI	TGATCA	1 cut(s)	370
FblI	GTMKAC	1 cut(s)	1046
Fnu4HI	GCNGC	5 cut(s)	660, 663, 696, 723, 1001
Fsp4HI	GCNGC	5 cut(s)	660, 663, 696, 723, 1001
GluI	GCNGC	5 cut(s)	660, 663, 696, 723, 1001
HaeIII	GGCC	3 cut(s)	279, 551, 571
Hin1II	CATG	7 cut(s)	86, 151, 165, 233, 760, 853, 895
HincII	GTYRAC	2 cut(s)	153, 492
HindII	GTYRAC	2 cut(s)	153, 492
HindIII	AAGCTT	2 cut(s)	254, 310
HinfI	GANTC	4 cut(s)	210, 502, 837, 1007
HpaI	GTTAAC	2 cut(s)	153, 492
HphI	GGTGA	1 cut(s)	374
Hpy166II	GTNNAC	4 cut(s)	153, 492, 955, 1047
Hpy188I	TCNGA	4 cut(s)	501, 707, 1021, 1039
Hpy188III	TCNNGA	5 cut(s)	230, 856, 892, 936, 994
Hpy8I	GTNNAC	4 cut(s)	153, 492, 955, 1047
HpyAV	CCTTC	6 cut(s)	168, 179, 775, 791, 817, 889
HpyCH4III	ACNGT	3 cut(s)	564, 680, 952
HpyCH4V	TGCA	8 cut(s)	133, 614, 665, 713, 722, 773, 915, 1003
HpyF10VI	GCNNNNNNNGC	3 cut(s)	318, 529, 719
HpyF3I	CTNAG	7 cut(s)	322, 344, 421, 881, 934, 1020, 1038
Hsp92II	CATG	7 cut(s)	86, 151, 165, 233, 760, 853, 895
Ksp22I	TGATCA	1 cut(s)	370
KspAI	GTTAAC	2 cut(s)	153, 492
Kzo9I	GATC	6 cut(s)	34, 325, 370, 378, 400, 886
LmnI	GCTCC	1 cut(s)	350
Lsp1109I	GCAGC	5 cut(s)	649, 671, 707, 734, 987
MaeIII	GTNAC	1 cut(s)	197
MalI	GATC	6 cut(s)	36, 327, 372, 380, 402, 888
MboI	GATC	6 cut(s)	34, 325, 370, 378, 400, 886
MboII	GAAGA	5 cut(s)	742, 745, 790, 797, 951
MflI	RGATCY	2 cut(s)	34, 325
MlsI	TGGCCA	1 cut(s)	551
MluCI	AATT	4 cut(s)	301, 429, 463, 907
MluNI	TGGCCA	1 cut(s)	551
MmeI	TCCRAC	2 cut(s)	435, 685
MnlI	CCTC	7 cut(s)	237, 297, 353, 701, 781, 990, 991
Mox20I	TGGCCA	1 cut(s)	551
MscI	TGGCCA	1 cut(s)	551
MseI	TTAA	8 cut(s)	11, 152, 171, 245, 314, 471, 491, 534
MslI	CAYNNNNRTG	1 cut(s)	228
Msp20I	TGGCCA	1 cut(s)	551
MspA1I	CMGCKG	1 cut(s)	662
MspR9I	CCNGG	3 cut(s)	360, 624, 656
MvaI	CCWGG	3 cut(s)	360, 624, 656
MvnI	CGCG	1 cut(s)	291
MwoI	GCNNNNNNNGC	3 cut(s)	318, 529, 719
NcoI	CCATGG	1 cut(s)	82
NdeI	CATATG	1 cut(s)	194
NdeII	GATC	6 cut(s)	34, 325, 370, 378, 400, 886
NlaIII	CATG	7 cut(s)	86, 151, 165, 233, 760, 853, 895
NlaIV	GGNNCC	4 cut(s)	138, 224, 792, 979
NspI	RCATGY	1 cut(s)	151
PagI	TCATGA	2 cut(s)	229, 891
PaqCI	CACCTGC	1 cut(s)	689
PfeI	GAWTC	4 cut(s)	210, 502, 837, 1007
PfoI	TCCNGGA	1 cut(s)	622
PkrI	GCNGC	5 cut(s)	661, 664, 697, 724, 1002
PpuMI	RGGWCCY	2 cut(s)	136, 790
Psp5II	RGGWCCY	2 cut(s)	136, 790
Psp6I	CCWGG	3 cut(s)	358, 622, 654
PspGI	CCWGG	3 cut(s)	358, 622, 654
PspN4I	GGNNCC	4 cut(s)	138, 224, 792, 979
PspPI	GGNCC	3 cut(s)	136, 569, 790
PspPPI	RGGWCCY	2 cut(s)	136, 790
PstI	CTGCAG	1 cut(s)	1005
PsuI	RGATCY	2 cut(s)	34, 325
PvuII	CAGCTG	1 cut(s)	662
RsaI	GTAC	2 cut(s)	307, 640
RsaNI	GTAC	2 cut(s)	306, 639
RseI	CAYNNNNRTG	1 cut(s)	228
SaqAI	TTAA	8 cut(s)	11, 152, 171, 245, 314, 471, 491, 534
SatI	GCNGC	5 cut(s)	660, 663, 696, 723, 1001
Sau3AI	GATC	6 cut(s)	34, 325, 370, 378, 400, 886
Sau96I	GGNCC	3 cut(s)	136, 569, 790
ScrFI	CCNGG	3 cut(s)	360, 624, 656
SfcI	CTRYAG	1 cut(s)	1001
SinI	GGWCC	2 cut(s)	136, 790
SmiMI	CAYNNNNRTG	1 cut(s)	228
Sse9I	AATT	4 cut(s)	301, 429, 463, 907
SsiI	CCGC	2 cut(s)	291, 509
SspI	AATATT	1 cut(s)	451
StyD4I	CCNGG	3 cut(s)	358, 622, 654
StyI	CCWWGG	1 cut(s)	82
TaaI	ACNGT	3 cut(s)	564, 680, 952
TaqI	TCGA	1 cut(s)	213
TasI	AATT	4 cut(s)	301, 429, 463, 907
TatI	WGTACW	1 cut(s)	305
TfiI	GAWTC	4 cut(s)	210, 502, 837, 1007
Tru1I	TTAA	8 cut(s)	11, 152, 171, 245, 314, 471, 491, 534
Tru9I	TTAA	8 cut(s)	11, 152, 171, 245, 314, 471, 491, 534
TscAI	CASTG	4 cut(s)	352, 595, 685, 969
TseI	GCWGC	5 cut(s)	659, 662, 695, 722, 1000
TspDTI	ATGAA	4 cut(s)	150, 181, 745, 908
TspRI	CASTG	4 cut(s)	352, 595, 685, 969
VpaK11BI	GGWCC	2 cut(s)	136, 790
XceI	RCATGY	1 cut(s)	151
XmiI	GTMKAC	1 cut(s)	1046

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.