Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0003453

Physical Location & Seq

Genomic Coordinates Reverse (-)

43781346 .. 43782134

Gene Structure 789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G022090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGTTGTTGACTGGACGAGATCTTTGCAATGTTTTTCTTGCGGGTGTTTTCTTGTTATTGCTTAGTTGTAGATTCATTTCAGGTGTCGAGAGAGATATCAACTGCTTGAGAAGTATAAAAGCAACATTGGAGGACCCTTTAGGCATGTTAAACTCTTCATGGGATTTTAACAATAAGACCGAAGGTTTCATCTGTAACTTTCTGGGAATCGAGTGTTGGCACCCTTATGAAAGCAAAGTTATAAATATCAAGCTTGGGGATTTGGGACTCAAAGGCCAGTTTCCTCGAGGCGTTATGAATTGTACAAGCTTAACAGGCTTAGATATTTCAAGCAACGGCCTCAGTGGATCACTTCCCAGTGATATCCATAAATTGATGCCTTTCGTTACGTCGCTTGATCTCTCGTCCAACAGCTTCTCAGGGCCAATTCCCCGGAATATCTCCAATTGTACTTTTCTCAATGTCCTTAAACTTGAGAACAACAAGTTCACAGGTCAGATTCCTGCAGAACTTGGTCAGCTCAGTAGGCTTAAAACATTTAGCGTGGCCAACAATCGACTGTCTGGGCCTGTCCCCACCCTCGACCGTGTCCTTACAATCGGAGAGGACAGCTATGCAAACAATCCTGGACTTTGTGGCGCTCCTTTGGAATGTTGCCAGGCAGCTGCAAAGAACAAGTTGTCAAATGATTTAGTGAGGGTTTTCAAGTCTTACACTGTAGTCATGTTGGGAGCACTCGGTTTTGGTATTGGTTTTGTTTCCTCTTTTTCTTTTTTCGTCTTTCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010941 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0031348 GO:0033612 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0060548 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

262

Amino Acids

28.51

Weight (kDa)

8.32

Isoelectric Point (pI)

36.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003453)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04660 FvH4_2g17431
malus_domestica	MD05G1153200.v1.1 MD10G1147500.v1.1
prunus_persica	Prupe.8G186300_v2.0.a1 Prupe.8G186400_v2.0.a1 Prupe.8G186500_v2.0.a1 Prupe.8G186600_v2.0.a1
pyrus_communis	pycom05g14760 pycom10g12710 pycom10g12740
rosa_chinensis	RchiOBHm_Chr6g0281591 RchiOBHm_Chr6g0281611 RchiOBHm_Chr6g0282141
rosa_laevigata	RLG00000012906 RLG00000012907 RLG00000012959
rosa_multiflora	Rmu_sc0006897.1_g000004
rosa_roxburghii	Rroxscaffold_7G00186470
rosa_rugosa	Rorug06G0142000 Rorug06G0145600 Rorug06G0170000
rosa_samantha	Rh6AG047800 Rh6AG254400 Rh6AG258700 Rh6BG044300 Rh6BG257600 Rh6BG262000 Rh6BG262200 Rh6CG256700 Rh6CG261000 Rh6DG248500 Rh6DG248600 Rh6DG253000
rosa_wichuraiana	Rw6G022090 Rw6G022390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	242
AbsI	CCTCGAGG	1 cut(s)	285
AccB1I	GGYRCC	1 cut(s)	219
AciI	CCGC	1 cut(s)	41
AclWI	GGATC	1 cut(s)	355
AcoI	YGGCCR	1 cut(s)	546
AfaI	GTAC	2 cut(s)	304, 451
AgsI	TTSAA	2 cut(s)	330, 706
AjnI	CCWGG	2 cut(s)	625, 657
AjuI	GAANNNNNNNTTGG	2 cut(s)	199, 231
AluBI	AGCT	6 cut(s)	253, 309, 414, 520, 612, 665
AluI	AGCT	6 cut(s)	253, 309, 414, 520, 612, 665
Alw21I	GWGCWC	1 cut(s)	736
AlwI	GGATC	1 cut(s)	355
Ama87I	CYCGRG	1 cut(s)	285
AoxI	GGCC	5 cut(s)	274, 337, 422, 546, 566
ApeKI	GCWGC	2 cut(s)	662, 665
ArsI	GACNNNNNNTTYG	1 cut(s)	38
AspLEI	GCGC	1 cut(s)	641
AspS9I	GGNCC	3 cut(s)	133, 422, 566
AsuC2I	CCSGG	1 cut(s)	433
AvaI	CYCGRG	1 cut(s)	285
AvaII	GGWCC	1 cut(s)	133
BalI	TGGCCA	1 cut(s)	548
BanI	GGYRCC	1 cut(s)	219
Bbv12I	GWGCWC	1 cut(s)	736
BbvI	GCAGC	2 cut(s)	652, 674
BceAI	ACGGC	1 cut(s)	352
BcgI	CGANNNNNNTGC	2 cut(s)	6, 40
BciT130I	CCWGG	2 cut(s)	627, 659
BcnI	CCSGG	1 cut(s)	433
BfmI	CTRYAG	2 cut(s)	504, 717
BfoI	RGCGCY	1 cut(s)	642
BglII	AGATCT	1 cut(s)	19
BisI	GCNGC	2 cut(s)	663, 666
BlsI	GCNGC	2 cut(s)	664, 667
Bme1390I	CCNGG	3 cut(s)	433, 627, 659
Bme18I	GGWCC	1 cut(s)	133
BmeT110I	CYCGRG	1 cut(s)	285
BmgT120I	GGNCC	3 cut(s)	133, 422, 566
BmiI	GGNNCC	2 cut(s)	135, 221
BmrFI	CCNGG	3 cut(s)	433, 627, 659
BmrI	ACTGGG	1 cut(s)	351
BmsI	GCATC	1 cut(s)	366
BmuI	ACTGGG	1 cut(s)	351
BpuEI	CTTGAG	2 cut(s)	127, 494
BpuMI	CCSGG	1 cut(s)	433
BsaJI	CCNNGG	1 cut(s)	431
Bse1I	ACTGG	3 cut(s)	16, 277, 357
Bse3DI	GCAATG	1 cut(s)	34
BseBI	CCWGG	2 cut(s)	627, 659
BseDI	CCNNGG	1 cut(s)	431
BseMI	GCAATG	1 cut(s)	34
BseMII	CTCAG	3 cut(s)	355, 432, 535
BseNI	ACTGG	3 cut(s)	16, 277, 357
BseXI	GCAGC	2 cut(s)	652, 674
Bsh1285I	CGRYCG	1 cut(s)	586
BshFI	GGCC	5 cut(s)	276, 339, 424, 548, 568
BshNI	GGYRCC	1 cut(s)	219
BsiEI	CGRYCG	1 cut(s)	586
BsiHKAI	GWGCWC	1 cut(s)	736
BsiHKCI	CYCGRG	1 cut(s)	285
BsiSI	CCGG	1 cut(s)	433
BslFI	GGGAC	2 cut(s)	279, 557
BsmFI	GGGAC	2 cut(s)	279, 557
BsnI	GGCC	5 cut(s)	276, 339, 424, 548, 568
BsoBI	CYCGRG	1 cut(s)	285
Bsp1286I	GDGCHC	1 cut(s)	736
Bsp1407I	TGTACA	1 cut(s)	302
Bsp143I	GATC	3 cut(s)	19, 347, 397
BspACI	CCGC	1 cut(s)	41
BspANI	GGCC	5 cut(s)	276, 339, 424, 548, 568
BspCNI	CTCAG	3 cut(s)	354, 431, 534
BspLI	GGNNCC	2 cut(s)	135, 221
BspMAI	CTGCAG	1 cut(s)	508
BspPI	GGATC	1 cut(s)	355
BspT107I	GGYRCC	1 cut(s)	219
BsrDI	GCAATG	1 cut(s)	34
BsrGI	TGTACA	1 cut(s)	302
BsrI	ACTGG	3 cut(s)	16, 277, 357
BssECI	CCNNGG	1 cut(s)	431
BssMI	GATC	3 cut(s)	19, 347, 397
Bst2UI	CCWGG	2 cut(s)	627, 659
Bst4CI	ACNGT	3 cut(s)	561, 587, 718
Bst6I	CTCTTC	1 cut(s)	160
BstAUI	TGTACA	1 cut(s)	302
BstDEI	CTNAG	5 cut(s)	62, 319, 341, 418, 521
BstH2I	RGCGCY	1 cut(s)	642
BstHHI	GCGC	1 cut(s)	641
BstKTI	GATC	3 cut(s)	22, 350, 400
BstMBI	GATC	3 cut(s)	19, 347, 397
BstMCI	CGRYCG	1 cut(s)	586
BstMWI	GCNNNNNNNGC	2 cut(s)	315, 526
BstNI	CCWGG	2 cut(s)	627, 659
BstNSI	RCATGY	1 cut(s)	148
BstSCI	CCNGG	3 cut(s)	431, 625, 657
BstSFI	CTRYAG	2 cut(s)	504, 717
BstV1I	GCAGC	2 cut(s)	652, 674
BstX2I	RGATCY	1 cut(s)	19
BstYI	RGATCY	1 cut(s)	19
BsuRI	GGCC	5 cut(s)	276, 339, 424, 548, 568
BtsIMutI	CAGTG	3 cut(s)	349, 364, 714
CfoI	GCGC	1 cut(s)	641
Cfr13I	GGNCC	3 cut(s)	133, 422, 566
Csp6I	GTAC	2 cut(s)	303, 450
CviAII	CATG	3 cut(s)	145, 159, 724
CviQI	GTAC	2 cut(s)	303, 450
DdeI	CTNAG	5 cut(s)	62, 319, 341, 418, 521
DpnI	GATC	3 cut(s)	21, 349, 399
DpnII	GATC	3 cut(s)	19, 347, 397
EaeI	YGGCCR	1 cut(s)	546
Eam1104I	CTCTTC	1 cut(s)	160
EarI	CTCTTC	1 cut(s)	160
Eco32I	GATATC	2 cut(s)	97, 364
Eco47I	GGWCC	1 cut(s)	133
Eco88I	CYCGRG	1 cut(s)	285
EcoO109I	RGGNCCY	1 cut(s)	133
EcoRII	CCWGG	2 cut(s)	625, 657
EcoRV	GATATC	2 cut(s)	97, 364
FaeI	CATG	3 cut(s)	148, 162, 727
FaiI	YATR	9 cut(s)	116, 146, 160, 228, 242, 296, 369, 615, 725
FaqI	GGGAC	2 cut(s)	279, 557
FatI	CATG	3 cut(s)	144, 158, 723
FauI	CCCGC	1 cut(s)	34
Fnu4HI	GCNGC	2 cut(s)	663, 666
Fsp4HI	GCNGC	2 cut(s)	663, 666
GlaI	GCGC	1 cut(s)	640
GluI	GCNGC	2 cut(s)	663, 666
HaeII	RGCGCY	1 cut(s)	642
HaeIII	GGCC	5 cut(s)	276, 339, 424, 548, 568
HapII	CCGG	1 cut(s)	433
HhaI	GCGC	1 cut(s)	641
Hin1II	CATG	3 cut(s)	148, 162, 727
Hin6I	GCGC	1 cut(s)	639
HinP1I	GCGC	1 cut(s)	639
HincII	GTYRAC	1 cut(s)	9
HindII	GTYRAC	1 cut(s)	9
HindIII	AAGCTT	2 cut(s)	251, 307
HinfI	GANTC	4 cut(s)	72, 207, 267, 499
HpaII	CCGG	1 cut(s)	433
Hpy166II	GTNNAC	2 cut(s)	9, 489
Hpy188I	TCNGA	2 cut(s)	498, 602
Hpy188III	TCNNGA	1 cut(s)	88
Hpy8I	GTNNAC	2 cut(s)	9, 489
Hpy99I	CGWCG	1 cut(s)	394
HpyAV	CCTTC	1 cut(s)	176
HpyCH4III	ACNGT	3 cut(s)	561, 587, 718
HpyCH4IV	ACGT	1 cut(s)	389
HpyCH4V	TGCA	4 cut(s)	27, 506, 617, 668
HpyF10VI	GCNNNNNNNGC	2 cut(s)	315, 526
HpyF3I	CTNAG	5 cut(s)	62, 319, 341, 418, 521
HpySE526I	ACGT	1 cut(s)	389
Hsp92II	CATG	3 cut(s)	148, 162, 727
HspAI	GCGC	1 cut(s)	639
Kzo9I	GATC	3 cut(s)	19, 347, 397
LmnI	GCTCC	2 cut(s)	646, 731
Lsp1109I	GCAGC	2 cut(s)	652, 674
LweI	GCATC	1 cut(s)	366
MaeII	ACGT	1 cut(s)	389
MaeIII	GTNAC	2 cut(s)	194, 385
MalI	GATC	3 cut(s)	21, 349, 399
MboI	GATC	3 cut(s)	19, 347, 397
MboII	GAAGA	1 cut(s)	147
MfeI	CAATTG	1 cut(s)	445
MflI	RGATCY	1 cut(s)	19
MhlI	GDGCHC	1 cut(s)	736
MlsI	TGGCCA	1 cut(s)	548
MluCI	AATT	4 cut(s)	298, 371, 426, 445
MluNI	TGGCCA	1 cut(s)	548
MlyI	GAGTC	1 cut(s)	261
MmeI	TCCRAC	1 cut(s)	432
MnlI	CCTC	8 cut(s)	124, 281, 294, 350, 590, 598, 690, 772
Mox20I	TGGCCA	1 cut(s)	548
MscI	TGGCCA	1 cut(s)	548
MseI	TTAA	5 cut(s)	149, 168, 311, 468, 531
MslI	CAYNNNNRTG	1 cut(s)	225
Msp20I	TGGCCA	1 cut(s)	548
MspA1I	CMGCKG	1 cut(s)	665
MspI	CCGG	1 cut(s)	433
MspR9I	CCNGG	3 cut(s)	433, 627, 659
MunI	CAATTG	1 cut(s)	445
MvaI	CCWGG	2 cut(s)	627, 659
MwoI	GCNNNNNNNGC	2 cut(s)	315, 526
NciI	CCSGG	1 cut(s)	433
NdeII	GATC	3 cut(s)	19, 347, 397
NlaIII	CATG	3 cut(s)	148, 162, 727
NlaIV	GGNNCC	2 cut(s)	135, 221
NspI	RCATGY	1 cut(s)	148
PaeR7I	CTCGAG	1 cut(s)	285
PfeI	GAWTC	3 cut(s)	72, 207, 499
PflFI	GACNNNGTC	1 cut(s)	587
PfoI	TCCNGGA	1 cut(s)	625
PkrI	GCNGC	2 cut(s)	664, 667
PleI	GAGTC	1 cut(s)	261
PpsI	GAGTC	1 cut(s)	261
PpuMI	RGGWCCY	1 cut(s)	133
PsiI	TTATAA	1 cut(s)	242
Psp5II	RGGWCCY	1 cut(s)	133
Psp6I	CCWGG	2 cut(s)	625, 657
PspGI	CCWGG	2 cut(s)	625, 657
PspN4I	GGNNCC	2 cut(s)	135, 221
PspPI	GGNCC	3 cut(s)	133, 422, 566
PspPPI	RGGWCCY	1 cut(s)	133
PspXI	VCTCGAGB	1 cut(s)	285
PstI	CTGCAG	1 cut(s)	508
PsuI	RGATCY	1 cut(s)	19
PsyI	GACNNNGTC	1 cut(s)	587
PvuII	CAGCTG	1 cut(s)	665
RsaI	GTAC	2 cut(s)	304, 451
RsaNI	GTAC	2 cut(s)	303, 450
RseI	CAYNNNNRTG	1 cut(s)	225
SaqAI	TTAA	5 cut(s)	149, 168, 311, 468, 531
SatI	GCNGC	2 cut(s)	663, 666
Sau3AI	GATC	3 cut(s)	19, 347, 397
Sau96I	GGNCC	3 cut(s)	133, 422, 566
SchI	GAGTC	1 cut(s)	261
ScrFI	CCNGG	3 cut(s)	433, 627, 659
SduI	GDGCHC	1 cut(s)	736
SfaNI	GCATC	1 cut(s)	366
SfcI	CTRYAG	2 cut(s)	504, 717
Sfr274I	CTCGAG	1 cut(s)	285
SinI	GGWCC	1 cut(s)	133
SlaI	CTCGAG	1 cut(s)	285
SmiMI	CAYNNNNRTG	1 cut(s)	225
SmlI	CTYRAG	3 cut(s)	106, 285, 473
SmoI	CTYRAG	3 cut(s)	106, 285, 473
Sse9I	AATT	4 cut(s)	298, 371, 426, 445
SsiI	CCGC	1 cut(s)	41
StyD4I	CCNGG	3 cut(s)	431, 625, 657
TaaI	ACNGT	3 cut(s)	561, 587, 718
TaiI	ACGT	1 cut(s)	392
TaqI	TCGA	6 cut(s)	87, 210, 286, 556, 582, 784
TaqII	GACCGA	1 cut(s)	194
TasI	AATT	4 cut(s)	298, 371, 426, 445
TatI	WGTACW	2 cut(s)	302, 449
TfiI	GAWTC	3 cut(s)	72, 207, 499
Tru1I	TTAA	5 cut(s)	149, 168, 311, 468, 531
Tru9I	TTAA	5 cut(s)	149, 168, 311, 468, 531
TscAI	CASTG	3 cut(s)	349, 364, 721
TseI	GCWGC	2 cut(s)	662, 665
TspDTI	ATGAA	5 cut(s)	64, 147, 178, 243, 311
TspRI	CASTG	3 cut(s)	349, 364, 721
Tth111I	GACNNNGTC	1 cut(s)	587
VpaK11BI	GGWCC	1 cut(s)	133
XceI	RCATGY	1 cut(s)	148
XhoI	CTCGAG	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.