Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003453

Physical Location & Seq

Genomic Coordinates Reverse (-)

47698486 .. 47699174

Gene Structure 689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG262000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGTTGTTGAGTGGACGAGATCTCTGCCTTGGGGTTGTTTTCTTGTTAGTCCTTAATTGTGGATTCAGTTCTGGTGGTGAGAGTGATATCAACTGCTTGAAAAGTATAAAAGCATCACTTGAGGACCCTTTGGATATGTTAACCTCTTGGGATTTCAGCACATCACCGAAGGGCCAATTTCCTCGCGGCATAGCGAATTGTACAAGCTTGACAGGCTTAGATCTTTCGAGCAACAAGTTGAGCGGATCCATTCCTGCTGATATCAGTAGAATCATTCCATTCAGTACGTTGCTTGCCCTCTCGTATAACAACTTCTCCGGGACAATCCCAGCCAGTATTTCCAACTGCACTTATCTGAATGTCCTCAAGCTTGATCACAACCACCTATCGGGTCAGATTCCCGGAGAAATTGGCCAACTTTCCAGGCTTAAAACATTCAGTGTGGCCAACAATCTTCTGCATGGGCCAGTCCCAGACTTCGTTGTGGCTTCGGTTACAGCGGACAGTTACGCAAACAATCCCGGTCTGTGCGGCGGTCCTCTGAAGAGTTGCCGGTCATCCGTGGAGAAGTCGTTAAATTGTTCAAGTCCACCGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010941 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0031348 GO:0033612 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0060548 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

199

Amino Acids

20.94

Weight (kDa)

6.25

Isoelectric Point (pI)

33.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003453)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04660 FvH4_2g17431
malus_domestica	MD05G1153200.v1.1 MD10G1147500.v1.1
prunus_persica	Prupe.8G186300_v2.0.a1 Prupe.8G186400_v2.0.a1 Prupe.8G186500_v2.0.a1 Prupe.8G186600_v2.0.a1
pyrus_communis	pycom05g14760 pycom10g12710 pycom10g12740
rosa_chinensis	RchiOBHm_Chr6g0281591 RchiOBHm_Chr6g0281611 RchiOBHm_Chr6g0282141
rosa_laevigata	RLG00000012906 RLG00000012907 RLG00000012959
rosa_multiflora	Rmu_sc0006897.1_g000004
rosa_roxburghii	Rroxscaffold_7G00186470
rosa_rugosa	Rorug06G0142000 Rorug06G0145600 Rorug06G0170000
rosa_samantha	Rh6AG047800 Rh6AG254400 Rh6AG258700 Rh6BG044300 Rh6BG257600 Rh6BG262000 Rh6BG262200 Rh6CG256700 Rh6CG261000 Rh6DG248500 Rh6DG248600 Rh6DG253000
rosa_wichuraiana	Rw6G022090 Rw6G022390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	243, 595
AccII	CGCG	1 cut(s)	186
AciI	CCGC	6 cut(s)	186, 243, 500, 531, 534, 593
AclWI	GGATC	2 cut(s)	240, 253
AcoI	YGGCCR	2 cut(s)	412, 444
AcuI	CTGAAG	1 cut(s)	563
AfaI	GTAC	2 cut(s)	202, 286
AfiI	CCNNNNNNNGG	1 cut(s)	388
AgsI	TTSAA	2 cut(s)	100, 585
AjnI	CCWGG	1 cut(s)	422
AluBI	AGCT	2 cut(s)	207, 370
AluI	AGCT	2 cut(s)	207, 370
AlwI	GGATC	2 cut(s)	240, 253
AoxI	GGCC	4 cut(s)	172, 412, 444, 464
AspS9I	GGNCC	4 cut(s)	124, 172, 464, 536
AsuC2I	CCSGG	3 cut(s)	319, 402, 522
AsuHPI	GGTGA	2 cut(s)	89, 156
AvaII	GGWCC	2 cut(s)	124, 536
BalI	TGGCCA	2 cut(s)	414, 446
BamHI	GGATCC	1 cut(s)	245
BarI	GAAGNNNNNNTAC	2 cut(s)	296, 328
BcgI	CGANNNNNNTGC	2 cut(s)	6, 40
BciT130I	CCWGG	1 cut(s)	424
BclI	TGATCA	1 cut(s)	373
BcnI	CCSGG	3 cut(s)	319, 402, 522
BfaI	CTAG	1 cut(s)	598
BglII	AGATCT	2 cut(s)	19, 220
BisI	GCNGC	2 cut(s)	187, 532
BlsI	GCNGC	2 cut(s)	188, 533
Bme1390I	CCNGG	4 cut(s)	319, 402, 424, 522
Bme18I	GGWCC	2 cut(s)	124, 536
BmgT120I	GGNCC	4 cut(s)	124, 172, 464, 536
BmiI	GGNNCC	2 cut(s)	126, 247
BmrFI	CCNGG	4 cut(s)	319, 402, 424, 522
BmsI	GCATC	1 cut(s)	122
BpuEI	CTTGAG	2 cut(s)	140, 350
BpuMI	CCSGG	3 cut(s)	319, 402, 522
BsaJI	CCNNGG	2 cut(s)	28, 561
BsaXI	ACNNNNNCTCC	4 cut(s)	299, 329, 557, 587
Bsc4I	CCNNNNNNNGG	1 cut(s)	388
Bse118I	RCCGGY	1 cut(s)	552
Bse1I	ACTGG	2 cut(s)	333, 467
BseBI	CCWGG	1 cut(s)	424
BseDI	CCNNGG	2 cut(s)	28, 561
BseGI	GGATG	1 cut(s)	557
BseLI	CCNNNNNNNGG	1 cut(s)	388
BseNI	ACTGG	2 cut(s)	333, 467
BseYI	CCCAGC	1 cut(s)	328
BsgI	GTGCAG	1 cut(s)	331
Bsh1236I	CGCG	1 cut(s)	186
BshFI	GGCC	4 cut(s)	174, 414, 446, 466
BsiSI	CCGG	4 cut(s)	318, 402, 522, 553
BslFI	GGGAC	2 cut(s)	334, 455
BslI	CCNNNNNNNGG	1 cut(s)	388
BsmFI	GGGAC	2 cut(s)	334, 455
BsnI	GGCC	4 cut(s)	174, 414, 446, 466
Bsp1407I	TGTACA	1 cut(s)	200
Bsp143I	GATC	4 cut(s)	19, 220, 245, 373
BspACI	CCGC	6 cut(s)	186, 243, 500, 531, 534, 593
BspANI	GGCC	4 cut(s)	174, 414, 446, 466
BspFNI	CGCG	1 cut(s)	186
BspLI	GGNNCC	2 cut(s)	126, 247
BspPI	GGATC	2 cut(s)	240, 253
BsrBI	CCGCTC	2 cut(s)	243, 595
BsrFI	RCCGGY	1 cut(s)	552
BsrGI	TGTACA	1 cut(s)	200
BsrI	ACTGG	2 cut(s)	333, 467
BssAI	RCCGGY	1 cut(s)	552
BssECI	CCNNGG	2 cut(s)	28, 561
BssMI	GATC	4 cut(s)	19, 220, 245, 373
BssT1I	CCWWGG	1 cut(s)	28
Bst2UI	CCWGG	1 cut(s)	424
Bst4CI	ACNGT	1 cut(s)	506
Bst6I	CTCTTC	1 cut(s)	539
BstAUI	TGTACA	1 cut(s)	200
BstC8I	GCNNGC	1 cut(s)	294
BstDEI	CTNAG	1 cut(s)	217
BstDSI	CCRYGG	1 cut(s)	561
BstF5I	GGATG	1 cut(s)	557
BstFNI	CGCG	1 cut(s)	186
BstKTI	GATC	4 cut(s)	22, 223, 248, 376
BstMBI	GATC	4 cut(s)	19, 220, 245, 373
BstMWI	GCNNNNNNNGC	1 cut(s)	213
BstNI	CCWGG	1 cut(s)	424
BstSCI	CCNGG	4 cut(s)	317, 400, 422, 520
BstUI	CGCG	1 cut(s)	186
BstX2I	RGATCY	3 cut(s)	19, 220, 245
BstYI	RGATCY	3 cut(s)	19, 220, 245
BsuRI	GGCC	4 cut(s)	174, 414, 446, 466
BtgI	CCRYGG	1 cut(s)	561
BtsCI	GGATG	1 cut(s)	557
BtsIMutI	CAGTG	1 cut(s)	445
Cac8I	GCNNGC	1 cut(s)	294
Cfr10I	RCCGGY	1 cut(s)	552
Cfr13I	GGNCC	4 cut(s)	124, 172, 464, 536
Csp6I	GTAC	2 cut(s)	201, 285
CviAII	CATG	1 cut(s)	461
CviQI	GTAC	2 cut(s)	201, 285
DdeI	CTNAG	1 cut(s)	217
DpnI	GATC	4 cut(s)	21, 222, 247, 375
DpnII	GATC	4 cut(s)	19, 220, 245, 373
EaeI	YGGCCR	2 cut(s)	412, 444
Eam1104I	CTCTTC	1 cut(s)	539
EarI	CTCTTC	1 cut(s)	539
Eco130I	CCWWGG	1 cut(s)	28
Eco32I	GATATC	2 cut(s)	88, 262
Eco47I	GGWCC	2 cut(s)	124, 536
Eco57I	CTGAAG	1 cut(s)	563
EcoO109I	RGGNCCY	1 cut(s)	124
EcoRII	CCWGG	1 cut(s)	422
EcoRV	GATATC	2 cut(s)	88, 262
EcoT14I	CCWWGG	1 cut(s)	28
ErhI	CCWWGG	1 cut(s)	28
FaeI	CATG	1 cut(s)	464
FaiI	YATR	5 cut(s)	107, 137, 191, 306, 462
FalI	AAGNNNNNCTT	2 cut(s)	102, 134
FaqI	GGGAC	2 cut(s)	334, 455
FatI	CATG	1 cut(s)	460
FbaI	TGATCA	1 cut(s)	373
Fnu4HI	GCNGC	2 cut(s)	187, 532
FokI	GGATG	1 cut(s)	544
Fsp4HI	GCNGC	2 cut(s)	187, 532
FspBI	CTAG	1 cut(s)	598
GluI	GCNGC	2 cut(s)	187, 532
GsaI	CCCAGC	1 cut(s)	332
HaeIII	GGCC	4 cut(s)	174, 414, 446, 466
HapII	CCGG	4 cut(s)	318, 402, 522, 553
Hin1II	CATG	1 cut(s)	464
HincII	GTYRAC	1 cut(s)	141
HindII	GTYRAC	1 cut(s)	141
HindIII	AAGCTT	2 cut(s)	205, 368
HinfI	GANTC	3 cut(s)	63, 270, 397
HpaI	GTTAAC	1 cut(s)	141
HpaII	CCGG	4 cut(s)	318, 402, 522, 553
HphI	GGTGA	2 cut(s)	89, 156
Hpy166II	GTNNAC	3 cut(s)	14, 141, 590
Hpy188I	TCNGA	3 cut(s)	357, 396, 543
Hpy8I	GTNNAC	3 cut(s)	14, 141, 590
HpyAV	CCTTC	1 cut(s)	163
HpyCH4III	ACNGT	1 cut(s)	506
HpyCH4IV	ACGT	1 cut(s)	287
HpyCH4V	TGCA	2 cut(s)	348, 460
HpyF10VI	GCNNNNNNNGC	1 cut(s)	213
HpyF3I	CTNAG	1 cut(s)	217
HpySE526I	ACGT	1 cut(s)	287
Hsp92II	CATG	1 cut(s)	464
Ksp22I	TGATCA	1 cut(s)	373
KspAI	GTTAAC	1 cut(s)	141
Kzo9I	GATC	4 cut(s)	19, 220, 245, 373
LweI	GCATC	1 cut(s)	122
MaeI	CTAG	1 cut(s)	598
MaeII	ACGT	1 cut(s)	287
MaeIII	GTNAC	2 cut(s)	493, 506
MalI	GATC	4 cut(s)	21, 222, 247, 375
MbiI	CCGCTC	2 cut(s)	243, 595
MboI	GATC	4 cut(s)	19, 220, 245, 373
MboII	GAAGA	2 cut(s)	446, 556
MflI	RGATCY	3 cut(s)	19, 220, 245
MlsI	TGGCCA	2 cut(s)	414, 446
MluCI	AATT	5 cut(s)	55, 176, 196, 408, 577
MluNI	TGGCCA	2 cut(s)	414, 446
MmeI	TCCRAC	1 cut(s)	366
MnlI	CCTC	6 cut(s)	115, 154, 192, 308, 374, 549
Mox20I	TGGCCA	2 cut(s)	414, 446
MscI	TGGCCA	2 cut(s)	414, 446
MseI	TTAA	4 cut(s)	54, 140, 429, 575
Msp20I	TGGCCA	2 cut(s)	414, 446
MspA1I	CMGCKG	1 cut(s)	500
MspI	CCGG	4 cut(s)	318, 402, 522, 553
MspR9I	CCNGG	4 cut(s)	319, 402, 424, 522
MvaI	CCWGG	1 cut(s)	424
MvnI	CGCG	1 cut(s)	186
MwoI	GCNNNNNNNGC	1 cut(s)	213
NciI	CCSGG	3 cut(s)	319, 402, 522
NdeII	GATC	4 cut(s)	19, 220, 245, 373
NlaIII	CATG	1 cut(s)	464
NlaIV	GGNNCC	2 cut(s)	126, 247
PfeI	GAWTC	3 cut(s)	63, 270, 397
PfoI	TCCNGGA	2 cut(s)	317, 400
PkrI	GCNGC	2 cut(s)	188, 533
PpuMI	RGGWCCY	1 cut(s)	124
Psp5II	RGGWCCY	1 cut(s)	124
Psp6I	CCWGG	1 cut(s)	422
PspFI	CCCAGC	1 cut(s)	328
PspGI	CCWGG	1 cut(s)	422
PspN4I	GGNNCC	2 cut(s)	126, 247
PspPI	GGNCC	4 cut(s)	124, 172, 464, 536
PspPPI	RGGWCCY	1 cut(s)	124
PsuI	RGATCY	3 cut(s)	19, 220, 245
RsaI	GTAC	2 cut(s)	202, 286
RsaNI	GTAC	2 cut(s)	201, 285
SaqAI	TTAA	4 cut(s)	54, 140, 429, 575
SatI	GCNGC	2 cut(s)	187, 532
Sau3AI	GATC	4 cut(s)	19, 220, 245, 373
Sau96I	GGNCC	4 cut(s)	124, 172, 464, 536
ScrFI	CCNGG	4 cut(s)	319, 402, 424, 522
SetI	ASST	5 cut(s)	146, 209, 290, 372, 387
SfaNI	GCATC	1 cut(s)	122
SinI	GGWCC	2 cut(s)	124, 536
SmlI	CTYRAG	2 cut(s)	119, 365
SmoI	CTYRAG	2 cut(s)	119, 365
Sse9I	AATT	5 cut(s)	55, 176, 196, 408, 577
SsiI	CCGC	6 cut(s)	186, 243, 500, 531, 534, 593
SspMI	CTAG	1 cut(s)	598
StyD4I	CCNGG	4 cut(s)	317, 400, 422, 520
StyI	CCWWGG	1 cut(s)	28
TaaI	ACNGT	1 cut(s)	506
TaiI	ACGT	1 cut(s)	290
TaqI	TCGA	1 cut(s)	227
TasI	AATT	5 cut(s)	55, 176, 196, 408, 577
TatI	WGTACW	1 cut(s)	200
TauI	GCSGC	2 cut(s)	189, 534
TfiI	GAWTC	3 cut(s)	63, 270, 397
Tru1I	TTAA	4 cut(s)	54, 140, 429, 575
Tru9I	TTAA	4 cut(s)	54, 140, 429, 575
TscAI	CASTG	1 cut(s)	445
TspGWI	ACGGA	1 cut(s)	550
TspRI	CASTG	1 cut(s)	445
VpaK11BI	GGWCC	2 cut(s)	124, 536
XspI	CTAG	1 cut(s)	598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.