Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003453

Physical Location & Seq

Genomic Coordinates Reverse (-)

18384202 .. 18385023

Gene Structure 822 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G186300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGTTGTTGAGAAAACAAGATGCTGGCATTTTCATTGGCAGTGTCCTCTGGTTGCTGCTTAGTTGTGGTTTCAGCTTTGGTGTTGAGAGTGATATCAACTGCTTGAAAAGTATAAAAGCATCACTTGAGGACACTTTGGGGTACTTAAACTCTTCATGGGATTTCAACAACAACACCGAAGGCTTCATCTGCAACTTTCTTGGGGTCGAGTGTTGGCACCCTCACGAGAGTAAAGTTTTAAACCTCAAGCTTTCGGATTTGGGACTGAAGGGCTCGTTTCCTCAAGGCGTAGCAAATTGCACAAGCCTAACAGGGTTAGATCTTTCAAGCAACCAGCTCAATGGACCTCTTCCTACTGACATCGATGAAATCATTATGTTCATTACGTCCCTTGATCTCTCATCTAACAGCTTCACAGGGCAAATCCCAATGAAGCTTTCGAATTGCGGCTCTCTGAATGTGCTTAAGCTTGACAACAACAAGTTCTCGGGTACCATTCCTCCAGAATTTGGCCAGCTTAGGAGGATTAAAGCATTTAGTGTGGCCAACAATCAACTGTCTGGCCCAGTCCCAAACTTTAATACTACATATATTACAGCGGACTCTTTCGCAAACAATCCTGGACTTTGTGGGAAGCCTCTGGAGGTGTGCCGGTCAGCTGCAAAGAAGTCTAGCATTGTTAAGGTTTTGAACTCATACAATGTAGCTATAGCAGCAGCAGCTGGTTTTGGTTTTGGTTTTCCTTTTTCTTTTTGTTTTTTCCTTCCAAGGGCTCCTAGTGTCCGTTATTTGGTGGTGTTCGCGCGAAGATTTAAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

274

Amino Acids

29.67

Weight (kDa)

8.55

Isoelectric Point (pI)

30.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003453)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04660 FvH4_2g17431
malus_domestica	MD05G1153200.v1.1 MD10G1147500.v1.1
prunus_persica	Prupe.8G186300_v2.0.a1 Prupe.8G186400_v2.0.a1 Prupe.8G186500_v2.0.a1 Prupe.8G186600_v2.0.a1
pyrus_communis	pycom05g14760 pycom10g12710 pycom10g12740
rosa_chinensis	RchiOBHm_Chr6g0281591 RchiOBHm_Chr6g0281611 RchiOBHm_Chr6g0282141
rosa_laevigata	RLG00000012906 RLG00000012907 RLG00000012959
rosa_multiflora	Rmu_sc0006897.1_g000004
rosa_roxburghii	Rroxscaffold_7G00186470
rosa_rugosa	Rorug06G0142000 Rorug06G0145600 Rorug06G0170000
rosa_samantha	Rh6AG047800 Rh6AG254400 Rh6AG258700 Rh6BG044300 Rh6BG257600 Rh6BG262000 Rh6BG262200 Rh6CG256700 Rh6CG261000 Rh6DG248500 Rh6DG248600 Rh6DG253000
rosa_wichuraiana	Rw6G022090 Rw6G022390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	491
AccB1I	GGYRCC	2 cut(s)	216, 491
AccB7I	CCANNNNNTGG	1 cut(s)	509
AccII	CGCG	2 cut(s)	803, 805
AciI	CCGC	2 cut(s)	447, 599
AcoI	YGGCCR	2 cut(s)	511, 543
AcsI	RAATTY	1 cut(s)	506
AcuI	CTGAAG	1 cut(s)	287
AfaI	GTAC	2 cut(s)	143, 493
AfiI	CCNNNNNNNGG	3 cut(s)	509, 769, 790
AflII	CTTAAG	1 cut(s)	464
AgsI	TTSAA	4 cut(s)	106, 166, 327, 691
AjnI	CCWGG	1 cut(s)	619
AjuI	GAANNNNNNNTTGG	2 cut(s)	421, 453
AlwNI	CAGNNNCTG	1 cut(s)	722
Ama87I	CYCGRG	1 cut(s)	487
AoxI	GGCC	3 cut(s)	511, 543, 562
ApeKI	GCWGC	5 cut(s)	55, 659, 713, 716, 719
ApoI	RAATTY	1 cut(s)	506
Asp718I	GGTACC	1 cut(s)	491
AspLEI	GCGC	1 cut(s)	805
AspS9I	GGNCC	2 cut(s)	344, 563
AsuII	TTCGAA	1 cut(s)	440
AvaI	CYCGRG	1 cut(s)	487
AvaII	GGWCC	1 cut(s)	344
BalI	TGGCCA	2 cut(s)	513, 545
BanI	GGYRCC	2 cut(s)	216, 491
BanII	GRGCYC	2 cut(s)	275, 775
BauI	CACGAG	1 cut(s)	224
BbvI	GCAGC	5 cut(s)	42, 646, 725, 728, 731
BciT130I	CCWGG	1 cut(s)	621
BfaI	CTAG	2 cut(s)	672, 777
BfmI	CTRYAG	1 cut(s)	708
BfrI	CTTAAG	1 cut(s)	464
BglII	AGATCT	1 cut(s)	319
BisI	GCNGC	6 cut(s)	56, 448, 660, 714, 717, 720
BlsI	GCNGC	6 cut(s)	57, 449, 661, 715, 718, 721
Bme1390I	CCNGG	1 cut(s)	621
Bme18I	GGWCC	1 cut(s)	344
BmeT110I	CYCGRG	1 cut(s)	487
BmgT120I	GGNCC	2 cut(s)	344, 563
BmiI	GGNNCC	3 cut(s)	218, 493, 774
BmrFI	CCNGG	1 cut(s)	621
BmrI	ACTGGG	1 cut(s)	560
BmsI	GCATC	2 cut(s)	10, 128
BmuI	ACTGGG	1 cut(s)	560
BpmI	CTGGAG	2 cut(s)	486, 662
Bpu10I	CCTNAGC	1 cut(s)	518
Bpu14I	TTCGAA	1 cut(s)	440
BpuEI	CTTGAG	3 cut(s)	146, 230, 267
Bsa29I	ATCGAT	1 cut(s)	363
BsaJI	CCNNGG	1 cut(s)	767
BsaXI	ACNNNNNCTCC	2 cut(s)	484, 514
Bsc4I	CCNNNNNNNGG	3 cut(s)	509, 769, 790
Bse118I	RCCGGY	1 cut(s)	651
Bse1I	ACTGG	1 cut(s)	566
BseBI	CCWGG	1 cut(s)	621
BseCI	ATCGAT	1 cut(s)	363
BseDI	CCNNGG	1 cut(s)	767
BseLI	CCNNNNNNNGG	3 cut(s)	509, 769, 790
BseNI	ACTGG	1 cut(s)	566
BseXI	GCAGC	5 cut(s)	42, 646, 725, 728, 731
Bsh1236I	CGCG	2 cut(s)	803, 805
BshFI	GGCC	3 cut(s)	513, 545, 564
BshNI	GGYRCC	2 cut(s)	216, 491
BshVI	ATCGAT	1 cut(s)	363
BsiHKCI	CYCGRG	1 cut(s)	487
BsiSI	CCGG	1 cut(s)	652
BslFI	GGGAC	3 cut(s)	276, 373, 554
BslI	CCNNNNNNNGG	3 cut(s)	509, 769, 790
BsmFI	GGGAC	3 cut(s)	276, 373, 554
BsnI	GGCC	3 cut(s)	513, 545, 564
BsoBI	CYCGRG	1 cut(s)	487
Bsp119I	TTCGAA	1 cut(s)	440
Bsp1286I	GDGCHC	2 cut(s)	275, 775
Bsp143I	GATC	2 cut(s)	319, 394
BspACI	CCGC	2 cut(s)	447, 599
BspANI	GGCC	3 cut(s)	513, 545, 564
BspDI	ATCGAT	1 cut(s)	363
BspFNI	CGCG	2 cut(s)	803, 805
BspLI	GGNNCC	3 cut(s)	218, 493, 774
BspT104I	TTCGAA	1 cut(s)	440
BspT107I	GGYRCC	2 cut(s)	216, 491
BspTI	CTTAAG	1 cut(s)	464
BsrFI	RCCGGY	1 cut(s)	651
BsrI	ACTGG	1 cut(s)	566
BssAI	RCCGGY	1 cut(s)	651
BssECI	CCNNGG	1 cut(s)	767
BssMI	GATC	2 cut(s)	319, 394
BssSI	CACGAG	1 cut(s)	224
BssT1I	CCWWGG	1 cut(s)	767
Bst2BI	CACGAG	1 cut(s)	224
Bst2UI	CCWGG	1 cut(s)	621
Bst4CI	ACNGT	1 cut(s)	558
Bst6I	CTCTTC	2 cut(s)	157, 354
BstAFI	CTTAAG	1 cut(s)	464
BstBI	TTCGAA	1 cut(s)	440
BstC8I	GCNNGC	2 cut(s)	25, 515
BstDEI	CTNAG	2 cut(s)	59, 518
BstFNI	CGCG	2 cut(s)	803, 805
BstHHI	GCGC	1 cut(s)	805
BstKTI	GATC	2 cut(s)	322, 397
BstMBI	GATC	2 cut(s)	319, 394
BstMWI	GCNNNNNNNGC	3 cut(s)	189, 713, 719
BstNI	CCWGG	1 cut(s)	621
BstSCI	CCNGG	1 cut(s)	619
BstSFI	CTRYAG	1 cut(s)	708
BstUI	CGCG	2 cut(s)	803, 805
BstV1I	GCAGC	5 cut(s)	42, 646, 725, 728, 731
BstX2I	RGATCY	1 cut(s)	319
BstXI	CCANNNNNNTGG	1 cut(s)	341
BstYI	RGATCY	1 cut(s)	319
Bsu15I	ATCGAT	1 cut(s)	363
BsuRI	GGCC	3 cut(s)	513, 545, 564
BsuTUI	ATCGAT	1 cut(s)	363
BtsI	GCAGTG	1 cut(s)	46
BtsIMutI	CAGTG	1 cut(s)	46
Cac8I	GCNNGC	2 cut(s)	25, 515
CaiI	CAGNNNCTG	1 cut(s)	722
CfoI	GCGC	1 cut(s)	805
Cfr10I	RCCGGY	1 cut(s)	651
Cfr13I	GGNCC	2 cut(s)	344, 563
ClaI	ATCGAT	1 cut(s)	363
Csp6I	GTAC	2 cut(s)	142, 492
CviAII	CATG	1 cut(s)	156
CviQI	GTAC	2 cut(s)	142, 492
DdeI	CTNAG	2 cut(s)	59, 518
DpnI	GATC	2 cut(s)	321, 396
DpnII	GATC	2 cut(s)	319, 394
DraI	TTTAAA	2 cut(s)	240, 814
EaeI	YGGCCR	2 cut(s)	511, 543
Eam1104I	CTCTTC	2 cut(s)	157, 354
EarI	CTCTTC	2 cut(s)	157, 354
Eco130I	CCWWGG	1 cut(s)	767
Eco24I	GRGCYC	2 cut(s)	275, 775
Eco32I	GATATC	1 cut(s)	94
Eco47I	GGWCC	1 cut(s)	344
Eco57I	CTGAAG	1 cut(s)	287
Eco88I	CYCGRG	1 cut(s)	487
EcoRII	CCWGG	1 cut(s)	619
EcoRV	GATATC	1 cut(s)	94
EcoT14I	CCWWGG	1 cut(s)	767
EcoT38I	GRGCYC	2 cut(s)	275, 775
ErhI	CCWWGG	1 cut(s)	767
FaeI	CATG	1 cut(s)	159
FaiI	YATR	7 cut(s)	113, 157, 377, 589, 591, 697, 710
FalI	AAGNNNNNCTT	2 cut(s)	108, 140
FaqI	GGGAC	3 cut(s)	276, 373, 554
FatI	CATG	1 cut(s)	155
Fnu4HI	GCNGC	6 cut(s)	56, 448, 660, 714, 717, 720
FriOI	GRGCYC	2 cut(s)	275, 775
Fsp4HI	GCNGC	6 cut(s)	56, 448, 660, 714, 717, 720
FspBI	CTAG	2 cut(s)	672, 777
GlaI	GCGC	1 cut(s)	804
GluI	GCNGC	6 cut(s)	56, 448, 660, 714, 717, 720
GsuI	CTGGAG	2 cut(s)	486, 662
HaeIII	GGCC	3 cut(s)	513, 545, 564
HapII	CCGG	1 cut(s)	652
HhaI	GCGC	1 cut(s)	805
Hin1II	CATG	1 cut(s)	159
Hin6I	GCGC	1 cut(s)	803
HinP1I	GCGC	1 cut(s)	803
HindIII	AAGCTT	3 cut(s)	248, 434, 467
HinfI	GANTC	1 cut(s)	602
HpaII	CCGG	1 cut(s)	652
Hpy188I	TCNGA	2 cut(s)	256, 456
Hpy188III	TCNNGA	3 cut(s)	224, 503, 641
HpyAV	CCTTC	3 cut(s)	173, 262, 773
HpyCH4III	ACNGT	1 cut(s)	558
HpyCH4IV	ACGT	1 cut(s)	386
HpyCH4V	TGCA	3 cut(s)	192, 300, 662
HpyF10VI	GCNNNNNNNGC	3 cut(s)	189, 713, 719
HpyF3I	CTNAG	2 cut(s)	59, 518
HpySE526I	ACGT	1 cut(s)	386
Hsp92II	CATG	1 cut(s)	159
HspAI	GCGC	1 cut(s)	803
KpnI	GGTACC	1 cut(s)	495
Kzo9I	GATC	2 cut(s)	319, 394
LmnI	GCTCC	1 cut(s)	778
Lsp1109I	GCAGC	5 cut(s)	42, 646, 725, 728, 731
LweI	GCATC	2 cut(s)	10, 128
MaeI	CTAG	2 cut(s)	672, 777
MaeII	ACGT	1 cut(s)	386
MalI	GATC	2 cut(s)	321, 396
MboI	GATC	2 cut(s)	319, 394
MboII	GAAGA	3 cut(s)	144, 341, 819
MflI	RGATCY	1 cut(s)	319
MhlI	GDGCHC	2 cut(s)	275, 775
MlsI	TGGCCA	2 cut(s)	513, 545
MluCI	AATT	3 cut(s)	295, 442, 506
MluNI	TGGCCA	2 cut(s)	513, 545
MlyI	GAGTC	1 cut(s)	596
Mox20I	TGGCCA	2 cut(s)	513, 545
MscI	TGGCCA	2 cut(s)	513, 545
MseI	TTAA	7 cut(s)	146, 239, 465, 528, 579, 681, 813
Msp20I	TGGCCA	2 cut(s)	513, 545
MspA1I	CMGCKG	3 cut(s)	599, 659, 722
MspCI	CTTAAG	1 cut(s)	464
MspI	CCGG	1 cut(s)	652
MspR9I	CCNGG	1 cut(s)	621
MvaI	CCWGG	1 cut(s)	621
MvnI	CGCG	2 cut(s)	803, 805
MwoI	GCNNNNNNNGC	3 cut(s)	189, 713, 719
NdeII	GATC	2 cut(s)	319, 394
NlaIII	CATG	1 cut(s)	159
NlaIV	GGNNCC	3 cut(s)	218, 493, 774
NspV	TTCGAA	1 cut(s)	440
PflMI	CCANNNNNTGG	1 cut(s)	509
PfoI	TCCNGGA	1 cut(s)	619
PkrI	GCNGC	6 cut(s)	57, 449, 661, 715, 718, 721
PleI	GAGTC	1 cut(s)	596
PpsI	GAGTC	1 cut(s)	596
Psp6I	CCWGG	1 cut(s)	619
PspGI	CCWGG	1 cut(s)	619
PspN4I	GGNNCC	3 cut(s)	218, 493, 774
PspPI	GGNCC	2 cut(s)	344, 563
PstNI	CAGNNNCTG	1 cut(s)	722
PsuI	RGATCY	1 cut(s)	319
PvuII	CAGCTG	2 cut(s)	659, 722
RsaI	GTAC	2 cut(s)	143, 493
RsaNI	GTAC	2 cut(s)	142, 492
SaqAI	TTAA	7 cut(s)	146, 239, 465, 528, 579, 681, 813
SatI	GCNGC	6 cut(s)	56, 448, 660, 714, 717, 720
Sau3AI	GATC	2 cut(s)	319, 394
Sau96I	GGNCC	2 cut(s)	344, 563
SchI	GAGTC	1 cut(s)	596
ScrFI	CCNGG	1 cut(s)	621
SduI	GDGCHC	2 cut(s)	275, 775
SfaNI	GCATC	2 cut(s)	10, 128
SfcI	CTRYAG	1 cut(s)	708
SfuI	TTCGAA	1 cut(s)	440
SinI	GGWCC	1 cut(s)	344
SmlI	CTYRAG	4 cut(s)	125, 245, 282, 464
SmoI	CTYRAG	4 cut(s)	125, 245, 282, 464
Sse9I	AATT	3 cut(s)	295, 442, 506
SsiI	CCGC	2 cut(s)	447, 599
SspMI	CTAG	2 cut(s)	672, 777
StyD4I	CCNGG	1 cut(s)	619
StyI	CCWWGG	1 cut(s)	767
TaaI	ACNGT	1 cut(s)	558
TaiI	ACGT	1 cut(s)	389
TaqI	TCGA	3 cut(s)	207, 363, 440
TasI	AATT	3 cut(s)	295, 442, 506
TauI	GCSGC	1 cut(s)	450
Tru1I	TTAA	7 cut(s)	146, 239, 465, 528, 579, 681, 813
Tru9I	TTAA	7 cut(s)	146, 239, 465, 528, 579, 681, 813
TscAI	CASTG	1 cut(s)	46
TseI	GCWGC	5 cut(s)	55, 659, 713, 716, 719
TspDTI	ATGAA	6 cut(s)	22, 144, 175, 370, 381, 446
TspGWI	ACGGA	1 cut(s)	773
TspRI	CASTG	1 cut(s)	46
Van91I	CCANNNNNTGG	1 cut(s)	509
Vha464I	CTTAAG	1 cut(s)	464
VpaK11BI	GGWCC	1 cut(s)	344
XapI	RAATTY	1 cut(s)	506
XspI	CTAG	2 cut(s)	672, 777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.