Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003453

Physical Location & Seq

Genomic Coordinates Reverse (-)

15020769 .. 15025557

Gene Structure 4789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g17431.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGTTGTTGCCCGGACGTGATGTTTGCAATGTTTTTGTTACGGGTGTTTTCTTGTTATTGCTTGCTTGTAGATTCATTTCTGGTGTTGAGAGTGATATAAACTGCTTGAAAAGTATAAGAGCAGAATTGGAGGACCCTTTAGACATGTTAAGCTCTTCATGGGATTTTAGCAATGCCACTGAAGGTTTCATCTGTAACTTTCTGGGAGTGGAGTGCTGGCACCCTCACGAGAGCAAAGTTTTAAATATTAAGCTTGCAGATTTGGGACTCAAAGGCCAGTTTCCTCGTGCCGTACAGAACTGTACAAGCTTAACAGGGTTAGATCTTTCGAGCAACGACCTCAGTGGACCTATTCCTAAGGATATTGATCAGTTGATCTCTTTCATTTCGTGGCTTGATCTCTCGTCCAACAGCTTCTCAAGCCCAATTCCCAGGAGCATCTCCAATTGCACACTTCTGAATGAACTTGCTCAGCTCAGGAGGCTTAAAACATTTAGCGTGTCCAACAATCAACTGTCTGGGCCAGTCCCCAACTTCAACAATGGCACAATCGGAGTTTTTTCTTCAAATACTGGCACAATCGGAGTTGAAAGTTATGCAAACAATCATGGACTTTGTGGTGCTCCTCTGGAGAGTTGCCGGTCATCATCTCAGAACAAGTGGTCAAAGGATATAGTGAGGGCGATCAAGTCCCACGTTGAACTCATGTTCGGAGCACTTGGTTTTGTTACAGTAAATAGGTCAAGAGCGAGTCGGAAACTCGAACTTGATGTACCTGTTGTGCTTGGGAGCTATAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010941 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0031348 GO:0033612 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0060548 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

267

Amino Acids

28.95

Weight (kDa)

6.09

Isoelectric Point (pI)

39.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003453)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04660 FvH4_2g17431
malus_domestica	MD05G1153200.v1.1 MD10G1147500.v1.1
prunus_persica	Prupe.8G186300_v2.0.a1 Prupe.8G186400_v2.0.a1 Prupe.8G186500_v2.0.a1 Prupe.8G186600_v2.0.a1
pyrus_communis	pycom05g14760 pycom10g12710 pycom10g12740
rosa_chinensis	RchiOBHm_Chr6g0281591 RchiOBHm_Chr6g0281611 RchiOBHm_Chr6g0282141
rosa_laevigata	RLG00000012906 RLG00000012907 RLG00000012959
rosa_multiflora	Rmu_sc0006897.1_g000004
rosa_roxburghii	Rroxscaffold_7G00186470
rosa_rugosa	Rorug06G0142000 Rorug06G0145600 Rorug06G0170000
rosa_samantha	Rh6AG047800 Rh6AG254400 Rh6AG258700 Rh6BG044300 Rh6BG257600 Rh6BG262000 Rh6BG262200 Rh6CG256700 Rh6CG261000 Rh6DG248500 Rh6DG248600 Rh6DG253000
rosa_wichuraiana	Rw6G022090 Rw6G022390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	219
AcuI	CTGAAG	1 cut(s)	201
AfaI	GTAC	3 cut(s)	294, 304, 774
AflIII	ACRYGT	1 cut(s)	144
AgsI	TTSAA	5 cut(s)	109, 538, 567, 590, 701
AjiI	CACGTC	1 cut(s)	17
AjnI	CCWGG	1 cut(s)	431
AluBI	AGCT	6 cut(s)	153, 253, 309, 414, 475, 792
AluI	AGCT	6 cut(s)	153, 253, 309, 414, 475, 792
Alw21I	GWGCWC	2 cut(s)	625, 718
AoxI	GGCC	2 cut(s)	274, 521
ArsI	GACNNNNNNTTYG	1 cut(s)	38
AspS9I	GGNCC	3 cut(s)	133, 347, 521
AsuC2I	CCSGG	1 cut(s)	12
AvaII	GGWCC	2 cut(s)	133, 347
AxyI	CCTNAGG	1 cut(s)	357
BanI	GGYRCC	1 cut(s)	219
BauI	CACGAG	2 cut(s)	227, 285
Bbv12I	GWGCWC	2 cut(s)	625, 718
BceAI	ACGGC	1 cut(s)	275
BciT130I	CCWGG	1 cut(s)	433
BclI	TGATCA	1 cut(s)	367
BcnI	CCSGG	1 cut(s)	12
BfmI	CTRYAG	1 cut(s)	793
BglII	AGATCT	1 cut(s)	322
BlpI	GCTNAGC	1 cut(s)	471
Bme1390I	CCNGG	2 cut(s)	12, 433
Bme18I	GGWCC	2 cut(s)	133, 347
BmgBI	CACGTC	1 cut(s)	17
BmgT120I	GGNCC	3 cut(s)	133, 347, 521
BmiI	GGNNCC	2 cut(s)	135, 221
BmrFI	CCNGG	2 cut(s)	12, 433
BmsI	GCATC	1 cut(s)	447
BpmI	CTGGAG	1 cut(s)	650
Bpu10I	CCTNAGC	1 cut(s)	476
Bpu1102I	GCTNAGC	1 cut(s)	471
BpuEI	CTTGAG	1 cut(s)	403
BpuMI	CCSGG	1 cut(s)	12
BsaBI	GATNNNNATC	1 cut(s)	366
BsaJI	CCNNGG	1 cut(s)	431
BsaXI	ACNNNNNCTCC	1 cut(s)	781
Bse118I	RCCGGY	1 cut(s)	639
Bse1I	ACTGG	3 cut(s)	277, 524, 577
Bse21I	CCTNAGG	1 cut(s)	357
Bse3DI	GCAATG	2 cut(s)	34, 178
Bse8I	GATNNNNATC	1 cut(s)	366
BseBI	CCWGG	1 cut(s)	433
BseDI	CCNNGG	1 cut(s)	431
BseJI	GATNNNNATC	1 cut(s)	366
BseMI	GCAATG	2 cut(s)	34, 178
BseMII	CTCAG	4 cut(s)	355, 485, 490, 665
BseNI	ACTGG	3 cut(s)	277, 524, 577
BseRI	GAGGAG	1 cut(s)	615
BshFI	GGCC	2 cut(s)	276, 523
BshNI	GGYRCC	1 cut(s)	219
BsiHKAI	GWGCWC	2 cut(s)	625, 718
BsiSI	CCGG	2 cut(s)	12, 640
BslFI	GGGAC	3 cut(s)	279, 512, 676
BsmFI	GGGAC	3 cut(s)	279, 512, 676
BsnI	GGCC	2 cut(s)	276, 523
Bsp1286I	GDGCHC	2 cut(s)	625, 718
Bsp1407I	TGTACA	1 cut(s)	302
Bsp143I	GATC	5 cut(s)	322, 367, 375, 397, 684
Bsp1720I	GCTNAGC	1 cut(s)	471
BspANI	GGCC	2 cut(s)	276, 523
BspCNI	CTCAG	4 cut(s)	354, 484, 489, 664
BspLI	GGNNCC	2 cut(s)	135, 221
BspQI	GCTCTTC	1 cut(s)	160
BspT107I	GGYRCC	1 cut(s)	219
BsrDI	GCAATG	2 cut(s)	34, 178
BsrFI	RCCGGY	1 cut(s)	639
BsrGI	TGTACA	1 cut(s)	302
BsrI	ACTGG	3 cut(s)	277, 524, 577
BssAI	RCCGGY	1 cut(s)	639
BssECI	CCNNGG	1 cut(s)	431
BssMI	GATC	5 cut(s)	322, 367, 375, 397, 684
BssSI	CACGAG	2 cut(s)	227, 285
Bst2BI	CACGAG	2 cut(s)	227, 285
Bst2UI	CCWGG	1 cut(s)	433
Bst4CI	ACNGT	3 cut(s)	302, 516, 733
Bst6I	CTCTTC	1 cut(s)	160
BstAUI	TGTACA	1 cut(s)	302
BstC8I	GCNNGC	3 cut(s)	63, 218, 255
BstDEI	CTNAG	5 cut(s)	341, 357, 471, 476, 651
BstKTI	GATC	5 cut(s)	325, 370, 378, 400, 687
BstMBI	GATC	5 cut(s)	322, 367, 375, 397, 684
BstMWI	GCNNNNNNNGC	2 cut(s)	420, 481
BstNI	CCWGG	1 cut(s)	433
BstNSI	RCATGY	1 cut(s)	148
BstSCI	CCNGG	2 cut(s)	10, 431
BstSFI	CTRYAG	1 cut(s)	793
BstX2I	RGATCY	1 cut(s)	322
BstYI	RGATCY	1 cut(s)	322
Bsu36I	CCTNAGG	1 cut(s)	357
BsuRI	GGCC	2 cut(s)	276, 523
BtrI	CACGTC	1 cut(s)	17
BtsIMutI	CAGTG	2 cut(s)	177, 349
Cac8I	GCNNGC	3 cut(s)	63, 218, 255
Cfr10I	RCCGGY	1 cut(s)	639
Cfr13I	GGNCC	3 cut(s)	133, 347, 521
Csp6I	GTAC	3 cut(s)	293, 303, 773
CviAII	CATG	4 cut(s)	145, 159, 608, 706
CviQI	GTAC	3 cut(s)	293, 303, 773
DdeI	CTNAG	5 cut(s)	341, 357, 471, 476, 651
DpnI	GATC	5 cut(s)	324, 369, 377, 399, 686
DpnII	GATC	5 cut(s)	322, 367, 375, 397, 684
DraI	TTTAAA	1 cut(s)	243
Eam1104I	CTCTTC	1 cut(s)	160
EarI	CTCTTC	1 cut(s)	160
Eco47I	GGWCC	2 cut(s)	133, 347
Eco57I	CTGAAG	1 cut(s)	201
Eco81I	CCTNAGG	1 cut(s)	357
EcoO109I	RGGNCCY	1 cut(s)	133
EcoRII	CCWGG	1 cut(s)	431
FaeI	CATG	4 cut(s)	148, 162, 611, 709
FaiI	YATR	9 cut(s)	98, 116, 146, 160, 597, 609, 674, 707, 795
FaqI	GGGAC	3 cut(s)	279, 512, 676
FatI	CATG	4 cut(s)	144, 158, 607, 705
FbaI	TGATCA	1 cut(s)	367
GsuI	CTGGAG	1 cut(s)	650
HaeIII	GGCC	2 cut(s)	276, 523
HapII	CCGG	2 cut(s)	12, 640
Hin1II	CATG	4 cut(s)	148, 162, 611, 709
HindIII	AAGCTT	2 cut(s)	251, 307
HinfI	GANTC	3 cut(s)	72, 267, 751
HpaII	CCGG	2 cut(s)	12, 640
Hpy166II	GTNNAC	1 cut(s)	347
Hpy188I	TCNGA	6 cut(s)	459, 554, 584, 654, 713, 756
Hpy188III	TCNNGA	4 cut(s)	227, 478, 629, 744
Hpy8I	GTNNAC	1 cut(s)	347
HpyAV	CCTTC	1 cut(s)	176
HpyCH4III	ACNGT	3 cut(s)	302, 516, 733
HpyCH4IV	ACGT	2 cut(s)	16, 696
HpyCH4V	TGCA	4 cut(s)	27, 257, 450, 599
HpyF10VI	GCNNNNNNNGC	2 cut(s)	420, 481
HpyF3I	CTNAG	5 cut(s)	341, 357, 471, 476, 651
HpySE526I	ACGT	2 cut(s)	16, 696
Hsp92II	CATG	4 cut(s)	148, 162, 611, 709
Ksp22I	TGATCA	1 cut(s)	367
Kzo9I	GATC	5 cut(s)	322, 367, 375, 397, 684
LguI	GCTCTTC	1 cut(s)	160
LmnI	GCTCC	4 cut(s)	435, 628, 713, 789
LweI	GCATC	1 cut(s)	447
MaeII	ACGT	2 cut(s)	16, 696
MaeIII	GTNAC	3 cut(s)	37, 194, 727
MalI	GATC	5 cut(s)	324, 369, 377, 399, 686
MboI	GATC	5 cut(s)	322, 367, 375, 397, 684
MboII	GAAGA	2 cut(s)	147, 555
MfeI	CAATTG	1 cut(s)	445
MflI	RGATCY	1 cut(s)	322
MhlI	GDGCHC	2 cut(s)	625, 718
MluCI	AATT	3 cut(s)	125, 426, 445
MlyI	GAGTC	2 cut(s)	261, 760
MmeI	TCCRAC	3 cut(s)	432, 528, 734
MnlI	CCTC	7 cut(s)	124, 234, 294, 350, 474, 636, 672
MseI	TTAA	6 cut(s)	149, 242, 249, 311, 486, 799
MspI	CCGG	2 cut(s)	12, 640
MspR9I	CCNGG	2 cut(s)	12, 433
MunI	CAATTG	1 cut(s)	445
MvaI	CCWGG	1 cut(s)	433
MwoI	GCNNNNNNNGC	2 cut(s)	420, 481
NciI	CCSGG	1 cut(s)	12
NdeII	GATC	5 cut(s)	322, 367, 375, 397, 684
NlaIII	CATG	4 cut(s)	148, 162, 611, 709
NlaIV	GGNNCC	2 cut(s)	135, 221
NspI	RCATGY	1 cut(s)	148
PciI	ACATGT	1 cut(s)	144
PciSI	GCTCTTC	1 cut(s)	160
PfeI	GAWTC	1 cut(s)	72
PleI	GAGTC	2 cut(s)	261, 759
PpsI	GAGTC	2 cut(s)	261, 759
PpuMI	RGGWCCY	1 cut(s)	133
PscI	ACATGT	1 cut(s)	144
Psp5II	RGGWCCY	1 cut(s)	133
Psp6I	CCWGG	1 cut(s)	431
PspGI	CCWGG	1 cut(s)	431
PspN4I	GGNNCC	2 cut(s)	135, 221
PspPI	GGNCC	3 cut(s)	133, 347, 521
PspPPI	RGGWCCY	1 cut(s)	133
PsrI	GAACNNNNNNTAC	2 cut(s)	756, 788
PsuI	RGATCY	1 cut(s)	322
RsaI	GTAC	3 cut(s)	294, 304, 774
RsaNI	GTAC	3 cut(s)	293, 303, 773
SapI	GCTCTTC	1 cut(s)	160
SaqAI	TTAA	6 cut(s)	149, 242, 249, 311, 486, 799
Sau3AI	GATC	5 cut(s)	322, 367, 375, 397, 684
Sau96I	GGNCC	3 cut(s)	133, 347, 521
SchI	GAGTC	2 cut(s)	261, 760
ScrFI	CCNGG	2 cut(s)	12, 433
SduI	GDGCHC	2 cut(s)	625, 718
SfaNI	GCATC	1 cut(s)	447
SfcI	CTRYAG	1 cut(s)	793
SinI	GGWCC	2 cut(s)	133, 347
SmlI	CTYRAG	1 cut(s)	418
SmoI	CTYRAG	1 cut(s)	418
Sse9I	AATT	3 cut(s)	125, 426, 445
SspI	AATATT	1 cut(s)	247
StyD4I	CCNGG	2 cut(s)	10, 431
TaaI	ACNGT	3 cut(s)	302, 516, 733
TaiI	ACGT	2 cut(s)	19, 699
TaqI	TCGA	2 cut(s)	329, 762
TasI	AATT	3 cut(s)	125, 426, 445
TatI	WGTACW	1 cut(s)	302
TfiI	GAWTC	1 cut(s)	72
Tru1I	TTAA	6 cut(s)	149, 242, 249, 311, 486, 799
Tru9I	TTAA	6 cut(s)	149, 242, 249, 311, 486, 799
TscAI	CASTG	2 cut(s)	184, 349
TspDTI	ATGAA	5 cut(s)	64, 147, 178, 373, 477
TspRI	CASTG	2 cut(s)	184, 349
VpaK11BI	GGWCC	2 cut(s)	133, 347
XceI	RCATGY	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.