Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003453

Physical Location & Seq

Genomic Coordinates Forward (+)

6925614 .. 6927329

Gene Structure 1716 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG047800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGCTTTCTTAGTGCGTTTGTTGTGTGGGCGAGGTCTTGGCATTTTTGTGCTCTTGTTATTGCTTAGTTGTAGGTTCAGCCATGGTGTTGAGAGTGATATAAACTGCTTGAGAAGTATAAAAGCAGCATTGGAGGATCCTTTAGACATGTTAGCCTCTTCATGGGATTTTAACAATGCCACCGAAGGATTCATCTGTAACTTTCTGGGAATCGAGTGTTGGCACCCTGATGAGAGCAAAGTTTTAAACATCAAGCTTGGGGATTTGGGACTCAAAGGCCACTTTCCTCGTGGTGTAGCGAATTGTACAAGCTTAACAGGCTTGGATCTTTCGAGCAACAACCTCAGTGGAGCTATTCCTGATGATATTGGTCGTTTGATCTCTTACATTACATCGCTTGATCTCTCGTCCAACAGCTTCTCAGGGCCAATTCCCAGGAGTATCTCCGATTGTACCCACCTCAATGTCCTTAAACTTGACAACAACAAGTTAACGGGTCAGATTCCTGCAGAACTTGGTCAGCTCAGTAGGCTTAAAACGTTTAGCGTGGCCAACAATCAACTGTCTGGGCCAATCCCCAACATCACGAATGCATATGGCAGCTATGAAAGGAATCCTGGACCTTGTGGTGCTCCTTTGGAAAGTTGCCAGGCAGCTGCAAAGAAGTATAACAGTGTAGTTATAGTGGCAGCAGGTGTCGGGGGTGCAACTTTTGCAGCAATATTAGTTGTGATTATTGGTTTGTTCTTCTTCATGCGTAGAGTGTCTGCAAGGAAGAAGGAAGAGGACCCTGAAGGCAACAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010941 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0031348 GO:0033612 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0060548 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

268

Amino Acids

28.76

Weight (kDa)

6.88

Isoelectric Point (pI)

32.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	130 - 188	5.2e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003453)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04660 FvH4_2g17431
malus_domestica	MD05G1153200.v1.1 MD10G1147500.v1.1
prunus_persica	Prupe.8G186300_v2.0.a1 Prupe.8G186400_v2.0.a1 Prupe.8G186500_v2.0.a1 Prupe.8G186600_v2.0.a1
pyrus_communis	pycom05g14760 pycom10g12710 pycom10g12740
rosa_chinensis	RchiOBHm_Chr6g0281591 RchiOBHm_Chr6g0281611 RchiOBHm_Chr6g0282141
rosa_laevigata	RLG00000012906 RLG00000012907 RLG00000012959
rosa_multiflora	Rmu_sc0006897.1_g000004
rosa_roxburghii	Rroxscaffold_7G00186470
rosa_rugosa	Rorug06G0142000 Rorug06G0145600 Rorug06G0170000
rosa_samantha	Rh6AG047800 Rh6AG254400 Rh6AG258700 Rh6BG044300 Rh6BG257600 Rh6BG262000 Rh6BG262200 Rh6CG256700 Rh6CG261000 Rh6DG248500 Rh6DG248600 Rh6DG253000
rosa_wichuraiana	Rw6G022090 Rw6G022390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	683
Acc36I	ACCTGC	1 cut(s)	683
AccB1I	GGYRCC	1 cut(s)	222
AclI	AACGTT	1 cut(s)	539
AclWI	GGATC	3 cut(s)	131, 144, 333
AcoI	YGGCCR	1 cut(s)	549
AfaI	GTAC	2 cut(s)	307, 454
AfiI	CCNNNNNNNGG	1 cut(s)	162
AflIII	ACRYGT	1 cut(s)	147
AjnI	CCWGG	3 cut(s)	434, 616, 648
AjuI	GAANNNNNNNTTGG	2 cut(s)	202, 234
AluBI	AGCT	7 cut(s)	256, 312, 353, 417, 523, 603, 656
AluI	AGCT	7 cut(s)	256, 312, 353, 417, 523, 603, 656
Alw21I	GWGCWC	2 cut(s)	54, 634
AlwI	GGATC	3 cut(s)	131, 144, 333
AoxI	GGCC	4 cut(s)	277, 425, 549, 569
ApeKI	GCWGC	6 cut(s)	125, 600, 653, 656, 689, 716
AspS9I	GGNCC	4 cut(s)	425, 569, 620, 787
AvaII	GGWCC	2 cut(s)	620, 787
BalI	TGGCCA	1 cut(s)	551
BamHI	GGATCC	1 cut(s)	136
BanI	GGYRCC	1 cut(s)	222
BauI	CACGAG	1 cut(s)	288
Bbv12I	GWGCWC	2 cut(s)	54, 634
BbvI	GCAGC	6 cut(s)	137, 612, 643, 665, 701, 728
BciT130I	CCWGG	3 cut(s)	436, 618, 650
BfmI	CTRYAG	1 cut(s)	507
BfuAI	ACCTGC	1 cut(s)	683
BisI	GCNGC	6 cut(s)	126, 601, 654, 657, 690, 717
BlsI	GCNGC	6 cut(s)	127, 602, 655, 658, 691, 718
Bme1390I	CCNGG	3 cut(s)	436, 618, 650
Bme18I	GGWCC	2 cut(s)	620, 787
BmgT120I	GGNCC	4 cut(s)	425, 569, 620, 787
BmiI	GGNNCC	3 cut(s)	138, 224, 789
BmrFI	CCNGG	3 cut(s)	436, 618, 650
BpuEI	CTTGAG	1 cut(s)	130
BsaJI	CCNNGG	2 cut(s)	82, 434
Bsc4I	CCNNNNNNNGG	1 cut(s)	162
BseBI	CCWGG	3 cut(s)	436, 618, 650
BseDI	CCNNGG	2 cut(s)	82, 434
BseLI	CCNNNNNNNGG	1 cut(s)	162
BseMII	CTCAG	3 cut(s)	358, 435, 538
BseXI	GCAGC	6 cut(s)	137, 612, 643, 665, 701, 728
BshFI	GGCC	4 cut(s)	279, 427, 551, 571
BshNI	GGYRCC	1 cut(s)	222
BsiHKAI	GWGCWC	2 cut(s)	54, 634
BslFI	GGGAC	1 cut(s)	282
BslI	CCNNNNNNNGG	1 cut(s)	162
BsmFI	GGGAC	1 cut(s)	282
BsmI	GAATGC	1 cut(s)	595
BsnI	GGCC	4 cut(s)	279, 427, 551, 571
Bsp1286I	GDGCHC	2 cut(s)	54, 634
Bsp1407I	TGTACA	1 cut(s)	305
Bsp143I	GATC	4 cut(s)	136, 325, 378, 400
Bsp19I	CCATGG	1 cut(s)	82
BspANI	GGCC	4 cut(s)	279, 427, 551, 571
BspCNI	CTCAG	3 cut(s)	357, 434, 537
BspLI	GGNNCC	3 cut(s)	138, 224, 789
BspMAI	CTGCAG	1 cut(s)	511
BspMI	ACCTGC	1 cut(s)	683
BspPI	GGATC	3 cut(s)	131, 144, 333
BspT107I	GGYRCC	1 cut(s)	222
BsrGI	TGTACA	1 cut(s)	305
BssECI	CCNNGG	2 cut(s)	82, 434
BssMI	GATC	4 cut(s)	136, 325, 378, 400
BssSI	CACGAG	1 cut(s)	288
BssT1I	CCWWGG	1 cut(s)	82
Bst2BI	CACGAG	1 cut(s)	288
Bst2UI	CCWGG	3 cut(s)	436, 618, 650
Bst4CI	ACNGT	2 cut(s)	564, 674
Bst6I	CTCTTC	2 cut(s)	163, 777
BstAPI	GCANNNNNTGC	1 cut(s)	713
BstAUI	TGTACA	1 cut(s)	305
BstDEI	CTNAG	5 cut(s)	10, 65, 344, 421, 524
BstDSI	CCRYGG	1 cut(s)	82
BstKTI	GATC	4 cut(s)	139, 328, 381, 403
BstMBI	GATC	4 cut(s)	136, 325, 378, 400
BstMWI	GCNNNNNNNGC	3 cut(s)	318, 529, 713
BstNI	CCWGG	3 cut(s)	436, 618, 650
BstNSI	RCATGY	1 cut(s)	151
BstSCI	CCNGG	3 cut(s)	434, 616, 648
BstSFI	CTRYAG	1 cut(s)	507
BstV1I	GCAGC	6 cut(s)	137, 612, 643, 665, 701, 728
BstX2I	RGATCY	2 cut(s)	136, 325
BstYI	RGATCY	2 cut(s)	136, 325
BsuRI	GGCC	4 cut(s)	279, 427, 551, 571
BtgI	CCRYGG	1 cut(s)	82
BtgZI	GCGATG	1 cut(s)	378
BtsIMutI	CAGTG	2 cut(s)	352, 679
BveI	ACCTGC	1 cut(s)	683
Cfr13I	GGNCC	4 cut(s)	425, 569, 620, 787
Csp6I	GTAC	2 cut(s)	306, 453
CspCI	CAANNNNNGTGG	2 cut(s)	328, 363
CviAII	CATG	4 cut(s)	83, 148, 162, 754
CviQI	GTAC	2 cut(s)	306, 453
DdeI	CTNAG	5 cut(s)	10, 65, 344, 421, 524
DpnI	GATC	4 cut(s)	138, 327, 380, 402
DpnII	GATC	4 cut(s)	136, 325, 378, 400
DraI	TTTAAA	1 cut(s)	246
EaeI	YGGCCR	1 cut(s)	549
Eam1104I	CTCTTC	2 cut(s)	163, 777
EarI	CTCTTC	2 cut(s)	163, 777
Eco130I	CCWWGG	1 cut(s)	82
Eco47I	GGWCC	2 cut(s)	620, 787
EcoO109I	RGGNCCY	1 cut(s)	787
EcoRII	CCWGG	3 cut(s)	434, 616, 648
EcoT14I	CCWWGG	1 cut(s)	82
EcoT22I	ATGCAT	1 cut(s)	595
ErhI	CCWWGG	1 cut(s)	82
FaeI	CATG	4 cut(s)	86, 151, 165, 757
FaqI	GGGAC	1 cut(s)	282
FatI	CATG	4 cut(s)	82, 147, 161, 753
FauNDI	CATATG	1 cut(s)	595
Fnu4HI	GCNGC	6 cut(s)	126, 601, 654, 657, 690, 717
Fsp4HI	GCNGC	6 cut(s)	126, 601, 654, 657, 690, 717
GluI	GCNGC	6 cut(s)	126, 601, 654, 657, 690, 717
HaeIII	GGCC	4 cut(s)	279, 427, 551, 571
Hin1II	CATG	4 cut(s)	86, 151, 165, 757
HincII	GTYRAC	1 cut(s)	492
HindII	GTYRAC	1 cut(s)	492
HindIII	AAGCTT	2 cut(s)	254, 310
HinfI	GANTC	5 cut(s)	189, 210, 270, 502, 613
HpaI	GTTAAC	1 cut(s)	492
Hpy166II	GTNNAC	1 cut(s)	492
Hpy188I	TCNGA	2 cut(s)	448, 501
Hpy188III	TCNNGA	2 cut(s)	359, 586
Hpy8I	GTNNAC	1 cut(s)	492
HpyAV	CCTTC	3 cut(s)	179, 772, 788
HpyCH4III	ACNGT	2 cut(s)	564, 674
HpyCH4IV	ACGT	1 cut(s)	539
HpyCH4V	TGCA	6 cut(s)	509, 593, 659, 707, 716, 770
HpyF10VI	GCNNNNNNNGC	3 cut(s)	318, 529, 713
HpyF3I	CTNAG	5 cut(s)	10, 65, 344, 421, 524
HpySE526I	ACGT	1 cut(s)	539
Hsp92II	CATG	4 cut(s)	86, 151, 165, 757
KspAI	GTTAAC	1 cut(s)	492
Kzo9I	GATC	4 cut(s)	136, 325, 378, 400
LmnI	GCTCC	2 cut(s)	350, 637
Lsp1109I	GCAGC	6 cut(s)	137, 612, 643, 665, 701, 728
MaeII	ACGT	1 cut(s)	539
MaeIII	GTNAC	1 cut(s)	197
MalI	GATC	4 cut(s)	138, 327, 380, 402
MboI	GATC	4 cut(s)	136, 325, 378, 400
MboII	GAAGA	5 cut(s)	150, 739, 742, 787, 794
MflI	RGATCY	2 cut(s)	136, 325
MhlI	GDGCHC	2 cut(s)	54, 634
MlsI	TGGCCA	1 cut(s)	551
MluCI	AATT	2 cut(s)	301, 429
MluNI	TGGCCA	1 cut(s)	551
MlyI	GAGTC	1 cut(s)	264
MmeI	TCCRAC	1 cut(s)	435
MnlI	CCTC	7 cut(s)	26, 127, 166, 297, 353, 470, 778
Mox20I	TGGCCA	1 cut(s)	551
Mph1103I	ATGCAT	1 cut(s)	595
MscI	TGGCCA	1 cut(s)	551
MseI	TTAA	6 cut(s)	171, 245, 314, 471, 491, 534
MslI	CAYNNNNRTG	3 cut(s)	47, 228, 462
Msp20I	TGGCCA	1 cut(s)	551
MspA1I	CMGCKG	1 cut(s)	656
MspR9I	CCNGG	3 cut(s)	436, 618, 650
Mva1269I	GAATGC	1 cut(s)	595
MvaI	CCWGG	3 cut(s)	436, 618, 650
MwoI	GCNNNNNNNGC	3 cut(s)	318, 529, 713
NcoI	CCATGG	1 cut(s)	82
NdeI	CATATG	1 cut(s)	595
NdeII	GATC	4 cut(s)	136, 325, 378, 400
NlaIII	CATG	4 cut(s)	86, 151, 165, 757
NlaIV	GGNNCC	3 cut(s)	138, 224, 789
NsiI	ATGCAT	1 cut(s)	595
NspI	RCATGY	1 cut(s)	151
PaqCI	CACCTGC	1 cut(s)	683
PciI	ACATGT	1 cut(s)	147
PctI	GAATGC	1 cut(s)	595
PfeI	GAWTC	4 cut(s)	189, 210, 502, 613
PfoI	TCCNGGA	1 cut(s)	616
PkrI	GCNGC	6 cut(s)	127, 602, 655, 658, 691, 718
PleI	GAGTC	1 cut(s)	264
PpsI	GAGTC	1 cut(s)	264
PpuMI	RGGWCCY	1 cut(s)	787
PscI	ACATGT	1 cut(s)	147
Psp1406I	AACGTT	1 cut(s)	539
Psp5II	RGGWCCY	1 cut(s)	787
Psp6I	CCWGG	3 cut(s)	434, 616, 648
PspGI	CCWGG	3 cut(s)	434, 616, 648
PspN4I	GGNNCC	3 cut(s)	138, 224, 789
PspPI	GGNCC	4 cut(s)	425, 569, 620, 787
PspPPI	RGGWCCY	1 cut(s)	787
PstI	CTGCAG	1 cut(s)	511
PsuI	RGATCY	2 cut(s)	136, 325
PvuII	CAGCTG	1 cut(s)	656
RsaI	GTAC	2 cut(s)	307, 454
RsaNI	GTAC	2 cut(s)	306, 453
RseI	CAYNNNNRTG	3 cut(s)	47, 228, 462
SaqAI	TTAA	6 cut(s)	171, 245, 314, 471, 491, 534
SatI	GCNGC	6 cut(s)	126, 601, 654, 657, 690, 717
Sau3AI	GATC	4 cut(s)	136, 325, 378, 400
Sau96I	GGNCC	4 cut(s)	425, 569, 620, 787
SchI	GAGTC	1 cut(s)	264
ScrFI	CCNGG	3 cut(s)	436, 618, 650
SduI	GDGCHC	2 cut(s)	54, 634
SfcI	CTRYAG	1 cut(s)	507
SinI	GGWCC	2 cut(s)	620, 787
SmiMI	CAYNNNNRTG	3 cut(s)	47, 228, 462
SmlI	CTYRAG	1 cut(s)	109
SmoI	CTYRAG	1 cut(s)	109
Sse9I	AATT	2 cut(s)	301, 429
SspI	AATATT	1 cut(s)	723
StyD4I	CCNGG	3 cut(s)	434, 616, 648
StyI	CCWWGG	1 cut(s)	82
TaaI	ACNGT	2 cut(s)	564, 674
TaiI	ACGT	1 cut(s)	542
TaqI	TCGA	2 cut(s)	213, 332
TasI	AATT	2 cut(s)	301, 429
TatI	WGTACW	1 cut(s)	305
TfiI	GAWTC	4 cut(s)	189, 210, 502, 613
Tru1I	TTAA	6 cut(s)	171, 245, 314, 471, 491, 534
Tru9I	TTAA	6 cut(s)	171, 245, 314, 471, 491, 534
TscAI	CASTG	2 cut(s)	352, 679
TseI	GCWGC	6 cut(s)	125, 600, 653, 656, 689, 716
TspDTI	ATGAA	4 cut(s)	150, 181, 621, 742
TspRI	CASTG	2 cut(s)	352, 679
VpaK11BI	GGWCC	2 cut(s)	620, 787
XceI	RCATGY	1 cut(s)	151
XcmI	CCANNNNNNNNNTGG	1 cut(s)	287
Zsp2I	ATGCAT	1 cut(s)	595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.