Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0003453

Physical Location & Seq

Genomic Coordinates Reverse (-)

43389330 .. 43390855

Gene Structure 1526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG261000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGCTATTCAGCTTATTAAACATATAGCAATGCTGTTGAGTGGACGAGATCTCTGCCTTGAGGTTGTTTTCTTGTTATTGCTTAGTTGTGGATTCAGTTCTGGCGGTGAGAGTGATATCAACTGCTTGAAAAGTATAAAAGCATCACTTGAGGACCCTTTGGATATGTTAACCTCTTCATGGGATTTCAGCAACATCACCGAAGGTTCCATCTGTAGCTTTCTGGGAGTGGAGTGTTGGCATCCTAATGAGAGCAAAGTGCTGAATATCAACCTCTCGAATTTGGGACTCAAGGGAAAATTTCCTCGCGGCATAGCGAATTGTACAAGCTTGACAGGCTTAGATCTTTCGAGCAACAAGTTGAGCGGATCCATTCCTGCTGATATCAGTAGAATCATTCCATTCAGTACGTTGCTTACCCTCTCGTATAACAACTTCTCCGGTACAATCCCAGCTAGTATCTCCAACTGCACTTATCTGAATGTCCTCAAGCTTGATCACAACCAGCTATCGGGTCAGATTCCCGGAGAAATTGGCCAACTTTCCAGGCTTAAAACATTCAGTGTGGCCAACAATCTTCTGCGTGGGCCAGTCCCAGACTTCGTTGTGGCTTCGGTTACAGCGGACAGTTATGCAAACAATCCCGGACTGTGCGGCGGTCCTCTGAAGAGTTGCCGGTCATCCGTGGAGAAGTCGTTAAATTGTTCAAGTCCACCACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010941 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0031348 GO:0033612 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0060548 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

240

Amino Acids

25.54

Weight (kDa)

6.28

Isoelectric Point (pI)

40.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003453)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04660 FvH4_2g17431
malus_domestica	MD05G1153200.v1.1 MD10G1147500.v1.1
prunus_persica	Prupe.8G186300_v2.0.a1 Prupe.8G186400_v2.0.a1 Prupe.8G186500_v2.0.a1 Prupe.8G186600_v2.0.a1
pyrus_communis	pycom05g14760 pycom10g12710 pycom10g12740
rosa_chinensis	RchiOBHm_Chr6g0281591 RchiOBHm_Chr6g0281611 RchiOBHm_Chr6g0282141
rosa_laevigata	RLG00000012906 RLG00000012907 RLG00000012959
rosa_multiflora	Rmu_sc0006897.1_g000004
rosa_roxburghii	Rroxscaffold_7G00186470
rosa_rugosa	Rorug06G0142000 Rorug06G0145600 Rorug06G0170000
rosa_samantha	Rh6AG047800 Rh6AG254400 Rh6AG258700 Rh6BG044300 Rh6BG257600 Rh6BG262000 Rh6BG262200 Rh6CG256700 Rh6CG261000 Rh6DG248500 Rh6DG248600 Rh6DG253000
rosa_wichuraiana	Rw6G022090 Rw6G022390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	366
AccII	CGCG	1 cut(s)	309
AciI	CCGC	6 cut(s)	105, 309, 366, 623, 654, 657
AclWI	GGATC	2 cut(s)	363, 376
AcoI	YGGCCR	2 cut(s)	535, 567
AcsI	RAATTY	2 cut(s)	280, 299
AcuI	CTGAAG	1 cut(s)	686
AfaI	GTAC	3 cut(s)	325, 409, 445
AfiI	CCNNNNNNNGG	2 cut(s)	180, 511
AgsI	TTSAA	2 cut(s)	130, 708
AjnI	CCWGG	1 cut(s)	545
AluBI	AGCT	6 cut(s)	13, 219, 330, 455, 493, 508
AluI	AGCT	6 cut(s)	13, 219, 330, 455, 493, 508
AlwI	GGATC	2 cut(s)	363, 376
AoxI	GGCC	3 cut(s)	535, 567, 587
ApoI	RAATTY	2 cut(s)	280, 299
AspS9I	GGNCC	3 cut(s)	154, 587, 659
AsuC2I	CCSGG	2 cut(s)	525, 645
AsuHPI	GGTGA	2 cut(s)	119, 190
AvaII	GGWCC	2 cut(s)	154, 659
BalI	TGGCCA	2 cut(s)	537, 569
BamHI	GGATCC	1 cut(s)	368
BarI	GAAGNNNNNNTAC	2 cut(s)	419, 451
BccI	CCATC	1 cut(s)	218
BcgI	CGANNNNNNTGC	2 cut(s)	36, 70
BciT130I	CCWGG	1 cut(s)	547
BclI	TGATCA	1 cut(s)	496
BcnI	CCSGG	2 cut(s)	525, 645
BfaI	CTAG	2 cut(s)	456, 721
BfmI	CTRYAG	1 cut(s)	214
BglII	AGATCT	2 cut(s)	49, 343
BisI	GCNGC	2 cut(s)	310, 655
BlsI	GCNGC	2 cut(s)	311, 656
Bme1390I	CCNGG	3 cut(s)	525, 547, 645
Bme18I	GGWCC	2 cut(s)	154, 659
BmgT120I	GGNCC	3 cut(s)	154, 587, 659
BmiI	GGNNCC	3 cut(s)	156, 208, 370
BmrFI	CCNGG	3 cut(s)	525, 547, 645
BmsI	GCATC	2 cut(s)	152, 250
BpuEI	CTTGAG	4 cut(s)	80, 170, 275, 473
BpuMI	CCSGG	2 cut(s)	525, 645
BsaJI	CCNNGG	1 cut(s)	684
BsaWI	WCCGGW	1 cut(s)	440
BsaXI	ACNNNNNCTCC	4 cut(s)	422, 452, 680, 710
Bsc4I	CCNNNNNNNGG	2 cut(s)	180, 511
Bse118I	RCCGGY	1 cut(s)	675
Bse1I	ACTGG	1 cut(s)	590
Bse3DI	GCAATG	1 cut(s)	36
BseBI	CCWGG	1 cut(s)	547
BseDI	CCNNGG	1 cut(s)	684
BseGI	GGATG	2 cut(s)	241, 680
BseLI	CCNNNNNNNGG	2 cut(s)	180, 511
BseMI	GCAATG	1 cut(s)	36
BseNI	ACTGG	1 cut(s)	590
BseYI	CCCAGC	1 cut(s)	451
BsgI	GTGCAG	1 cut(s)	454
Bsh1236I	CGCG	1 cut(s)	309
BshFI	GGCC	3 cut(s)	537, 569, 589
BsiSI	CCGG	4 cut(s)	441, 525, 645, 676
BslFI	GGGAC	2 cut(s)	300, 578
BslI	CCNNNNNNNGG	2 cut(s)	180, 511
BsmFI	GGGAC	2 cut(s)	300, 578
BsnI	GGCC	3 cut(s)	537, 569, 589
Bsp1407I	TGTACA	1 cut(s)	323
Bsp143I	GATC	4 cut(s)	49, 343, 368, 496
BspACI	CCGC	6 cut(s)	105, 309, 366, 623, 654, 657
BspANI	GGCC	3 cut(s)	537, 569, 589
BspFNI	CGCG	1 cut(s)	309
BspLI	GGNNCC	3 cut(s)	156, 208, 370
BspPI	GGATC	2 cut(s)	363, 376
BsrBI	CCGCTC	1 cut(s)	366
BsrDI	GCAATG	1 cut(s)	36
BsrFI	RCCGGY	1 cut(s)	675
BsrGI	TGTACA	1 cut(s)	323
BsrI	ACTGG	1 cut(s)	590
BssAI	RCCGGY	1 cut(s)	675
BssECI	CCNNGG	1 cut(s)	684
BssMI	GATC	4 cut(s)	49, 343, 368, 496
Bst2UI	CCWGG	1 cut(s)	547
Bst4CI	ACNGT	2 cut(s)	629, 651
Bst6I	CTCTTC	2 cut(s)	181, 662
BstAUI	TGTACA	1 cut(s)	323
BstDEI	CTNAG	2 cut(s)	83, 340
BstDSI	CCRYGG	1 cut(s)	684
BstF5I	GGATG	2 cut(s)	241, 680
BstFNI	CGCG	1 cut(s)	309
BstKTI	GATC	4 cut(s)	52, 346, 371, 499
BstMBI	GATC	4 cut(s)	49, 343, 368, 496
BstMWI	GCNNNNNNNGC	1 cut(s)	336
BstNI	CCWGG	1 cut(s)	547
BstSCI	CCNGG	3 cut(s)	523, 545, 643
BstSFI	CTRYAG	1 cut(s)	214
BstUI	CGCG	1 cut(s)	309
BstX2I	RGATCY	3 cut(s)	49, 343, 368
BstYI	RGATCY	3 cut(s)	49, 343, 368
BsuRI	GGCC	3 cut(s)	537, 569, 589
BtgI	CCRYGG	1 cut(s)	684
BtsCI	GGATG	2 cut(s)	241, 680
BtsIMutI	CAGTG	1 cut(s)	568
Cfr10I	RCCGGY	1 cut(s)	675
Cfr13I	GGNCC	3 cut(s)	154, 587, 659
Csp6I	GTAC	3 cut(s)	324, 408, 444
CviAII	CATG	1 cut(s)	180
CviQI	GTAC	3 cut(s)	324, 408, 444
DdeI	CTNAG	2 cut(s)	83, 340
DpnI	GATC	4 cut(s)	51, 345, 370, 498
DpnII	GATC	4 cut(s)	49, 343, 368, 496
EaeI	YGGCCR	2 cut(s)	535, 567
Eam1104I	CTCTTC	2 cut(s)	181, 662
EarI	CTCTTC	2 cut(s)	181, 662
Eco32I	GATATC	2 cut(s)	118, 385
Eco47I	GGWCC	2 cut(s)	154, 659
Eco57I	CTGAAG	1 cut(s)	686
EcoO109I	RGGNCCY	1 cut(s)	154
EcoRII	CCWGG	1 cut(s)	545
EcoRV	GATATC	2 cut(s)	118, 385
FaeI	CATG	1 cut(s)	183
FaiI	YATR	8 cut(s)	24, 26, 137, 167, 181, 314, 429, 633
FalI	AAGNNNNNCTT	2 cut(s)	132, 164
FaqI	GGGAC	2 cut(s)	300, 578
FatI	CATG	1 cut(s)	179
FbaI	TGATCA	1 cut(s)	496
Fnu4HI	GCNGC	2 cut(s)	310, 655
FokI	GGATG	2 cut(s)	228, 667
Fsp4HI	GCNGC	2 cut(s)	310, 655
FspBI	CTAG	2 cut(s)	456, 721
GluI	GCNGC	2 cut(s)	310, 655
GsaI	CCCAGC	1 cut(s)	455
HaeIII	GGCC	3 cut(s)	537, 569, 589
HapII	CCGG	4 cut(s)	441, 525, 645, 676
Hin1II	CATG	1 cut(s)	183
HincII	GTYRAC	1 cut(s)	171
HindII	GTYRAC	1 cut(s)	171
HindIII	AAGCTT	2 cut(s)	328, 491
HinfI	GANTC	4 cut(s)	93, 288, 393, 520
HpaI	GTTAAC	1 cut(s)	171
HpaII	CCGG	4 cut(s)	441, 525, 645, 676
HphI	GGTGA	2 cut(s)	119, 190
Hpy166II	GTNNAC	3 cut(s)	44, 171, 713
Hpy188I	TCNGA	3 cut(s)	480, 519, 666
Hpy188III	TCNNGA	1 cut(s)	277
Hpy8I	GTNNAC	3 cut(s)	44, 171, 713
HpyAV	CCTTC	1 cut(s)	197
HpyCH4III	ACNGT	2 cut(s)	629, 651
HpyCH4IV	ACGT	1 cut(s)	410
HpyCH4V	TGCA	2 cut(s)	471, 635
HpyF10VI	GCNNNNNNNGC	1 cut(s)	336
HpyF3I	CTNAG	2 cut(s)	83, 340
HpySE526I	ACGT	1 cut(s)	410
Hsp92II	CATG	1 cut(s)	183
Ksp22I	TGATCA	1 cut(s)	496
KspAI	GTTAAC	1 cut(s)	171
Kzo9I	GATC	4 cut(s)	49, 343, 368, 496
LweI	GCATC	2 cut(s)	152, 250
MaeI	CTAG	2 cut(s)	456, 721
MaeII	ACGT	1 cut(s)	410
MaeIII	GTNAC	1 cut(s)	616
MalI	GATC	4 cut(s)	51, 345, 370, 498
MbiI	CCGCTC	1 cut(s)	366
MboI	GATC	4 cut(s)	49, 343, 368, 496
MboII	GAAGA	3 cut(s)	168, 569, 679
MflI	RGATCY	3 cut(s)	49, 343, 368
MlsI	TGGCCA	2 cut(s)	537, 569
MluCI	AATT	5 cut(s)	280, 299, 319, 531, 700
MluNI	TGGCCA	2 cut(s)	537, 569
MlyI	GAGTC	1 cut(s)	282
MmeI	TCCRAC	1 cut(s)	489
MnlI	CCTC	8 cut(s)	55, 145, 184, 284, 315, 431, 497, 672
Mox20I	TGGCCA	2 cut(s)	537, 569
MscI	TGGCCA	2 cut(s)	537, 569
MseI	TTAA	4 cut(s)	18, 170, 552, 698
MslI	CAYNNNNRTG	1 cut(s)	246
Msp20I	TGGCCA	2 cut(s)	537, 569
MspA1I	CMGCKG	1 cut(s)	623
MspI	CCGG	4 cut(s)	441, 525, 645, 676
MspR9I	CCNGG	3 cut(s)	525, 547, 645
MvaI	CCWGG	1 cut(s)	547
MvnI	CGCG	1 cut(s)	309
MwoI	GCNNNNNNNGC	1 cut(s)	336
NciI	CCSGG	2 cut(s)	525, 645
NdeII	GATC	4 cut(s)	49, 343, 368, 496
NlaIII	CATG	1 cut(s)	183
NlaIV	GGNNCC	3 cut(s)	156, 208, 370
PfeI	GAWTC	3 cut(s)	93, 393, 520
PfoI	TCCNGGA	2 cut(s)	523, 643
PkrI	GCNGC	2 cut(s)	311, 656
PleI	GAGTC	1 cut(s)	282
PpsI	GAGTC	1 cut(s)	282
PpuMI	RGGWCCY	1 cut(s)	154
Psp5II	RGGWCCY	1 cut(s)	154
Psp6I	CCWGG	1 cut(s)	545
PspFI	CCCAGC	1 cut(s)	451
PspGI	CCWGG	1 cut(s)	545
PspN4I	GGNNCC	3 cut(s)	156, 208, 370
PspPI	GGNCC	3 cut(s)	154, 587, 659
PspPPI	RGGWCCY	1 cut(s)	154
PsuI	RGATCY	3 cut(s)	49, 343, 368
RsaI	GTAC	3 cut(s)	325, 409, 445
RsaNI	GTAC	3 cut(s)	324, 408, 444
RseI	CAYNNNNRTG	1 cut(s)	246
SaqAI	TTAA	4 cut(s)	18, 170, 552, 698
SatI	GCNGC	2 cut(s)	310, 655
Sau3AI	GATC	4 cut(s)	49, 343, 368, 496
Sau96I	GGNCC	3 cut(s)	154, 587, 659
SchI	GAGTC	1 cut(s)	282
ScrFI	CCNGG	3 cut(s)	525, 547, 645
SfaNI	GCATC	2 cut(s)	152, 250
SfcI	CTRYAG	1 cut(s)	214
SinI	GGWCC	2 cut(s)	154, 659
SmiMI	CAYNNNNRTG	1 cut(s)	246
SmlI	CTYRAG	4 cut(s)	59, 149, 290, 488
SmoI	CTYRAG	4 cut(s)	59, 149, 290, 488
Sse9I	AATT	5 cut(s)	280, 299, 319, 531, 700
SsiI	CCGC	6 cut(s)	105, 309, 366, 623, 654, 657
SspMI	CTAG	2 cut(s)	456, 721
StyD4I	CCNGG	3 cut(s)	523, 545, 643
TaaI	ACNGT	2 cut(s)	629, 651
TaiI	ACGT	1 cut(s)	413
TaqI	TCGA	2 cut(s)	278, 350
TasI	AATT	5 cut(s)	280, 299, 319, 531, 700
TatI	WGTACW	1 cut(s)	323
TauI	GCSGC	2 cut(s)	312, 657
TfiI	GAWTC	3 cut(s)	93, 393, 520
Tru1I	TTAA	4 cut(s)	18, 170, 552, 698
Tru9I	TTAA	4 cut(s)	18, 170, 552, 698
TscAI	CASTG	1 cut(s)	568
TspDTI	ATGAA	1 cut(s)	168
TspGWI	ACGGA	1 cut(s)	673
TspRI	CASTG	1 cut(s)	568
VpaK11BI	GGWCC	2 cut(s)	154, 659
XapI	RAATTY	2 cut(s)	280, 299
XspI	CTAG	2 cut(s)	456, 721

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.