Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003453

Physical Location & Seq

Genomic Coordinates Reverse (-)

45490723 .. 45492893

Gene Structure 2171 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25308

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGTTGTTGAGTGGACGAGATCTCTGCCTTGGGGTTGTTTTCTTGTCATTGCTTAGTTGTGGATTCAGTTCTGGCAGTGCGAGTGATATCAACTGCTTGAAAAGTATAAAAGCATCACTTGAGGACCCTTTGGATATGTTAACTTCATGGGATTTCAGCAACATCACCGAAGGTTCCATCTGTAGCTTTCTGGGAATCGAGTGTTGGCACCCTCATGAGAGCAAAGTTATAAATATCAAGCTTGGGGATTTGGGACTCAAAGGCCAGTTTCCTCGCGGCGTTATGAATTGTACAAGCTTAACAGGCTTAGATCTTTCGAGCAACAAGTTGAGCGGATCCATTCCTGCTGATATCAGTAGAATCATTCCATTCAGTACGTTGCTTGCCCTCTCGTATAACAACTTCTCCGGGACAATCCCAGCCAGTATTTCCAACTGCACTTATCTGAATGTCCTCAAGCTTGATCACAACCAGCTATCGGGTCAGATTCCCGGAGAAATTGGCCAACTTTCCAGGCTTAAAACATTCAGTGTGGCCAACAATCTTCTGCGTGGGCCAGTCCCAGACTTCGTTGTGGCTTCGGTTACAGCGGACAGTTATGCAAACAATCCCGGACTGTGCGGCGGTCCTCTGAAGAGTTGCCGGTCATCCGTGGAGAAGTCGTTAAATTGTTCAAGTCCACCACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010941 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0031348 GO:0033612 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0060548 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

229

Amino Acids

24.25

Weight (kDa)

6.27

Isoelectric Point (pI)

39.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	27 - 69	1.7e-06	Leucine rich repeat N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003453)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04660 FvH4_2g17431
malus_domestica	MD05G1153200.v1.1 MD10G1147500.v1.1
prunus_persica	Prupe.8G186300_v2.0.a1 Prupe.8G186400_v2.0.a1 Prupe.8G186500_v2.0.a1 Prupe.8G186600_v2.0.a1
pyrus_communis	pycom05g14760 pycom10g12710 pycom10g12740
rosa_chinensis	RchiOBHm_Chr6g0281591 RchiOBHm_Chr6g0281611 RchiOBHm_Chr6g0282141
rosa_laevigata	RLG00000012906 RLG00000012907 RLG00000012959
rosa_multiflora	Rmu_sc0006897.1_g000004
rosa_roxburghii	Rroxscaffold_7G00186470
rosa_rugosa	Rorug06G0142000 Rorug06G0145600 Rorug06G0170000
rosa_samantha	Rh6AG047800 Rh6AG254400 Rh6AG258700 Rh6BG044300 Rh6BG257600 Rh6BG262000 Rh6BG262200 Rh6CG256700 Rh6CG261000 Rh6DG248500 Rh6DG248600 Rh6DG253000
rosa_wichuraiana	Rw6G022090 Rw6G022390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	230
AccB1I	GGYRCC	1 cut(s)	207
AccBSI	CCGCTC	1 cut(s)	333
AccII	CGCG	1 cut(s)	276
AciI	CCGC	5 cut(s)	276, 333, 590, 621, 624
AclWI	GGATC	2 cut(s)	330, 343
AcoI	YGGCCR	2 cut(s)	502, 534
AcuI	CTGAAG	1 cut(s)	653
AfaI	GTAC	2 cut(s)	292, 376
AfiI	CCNNNNNNNGG	1 cut(s)	478
AgsI	TTSAA	2 cut(s)	100, 675
AjnI	CCWGG	1 cut(s)	512
AjuI	GAANNNNNNNTTGG	2 cut(s)	187, 219
AluBI	AGCT	5 cut(s)	186, 241, 297, 460, 475
AluI	AGCT	5 cut(s)	186, 241, 297, 460, 475
AlwI	GGATC	2 cut(s)	330, 343
AoxI	GGCC	4 cut(s)	262, 502, 534, 554
AspS9I	GGNCC	3 cut(s)	124, 554, 626
AsuC2I	CCSGG	3 cut(s)	409, 492, 612
AsuHPI	GGTGA	1 cut(s)	157
AvaII	GGWCC	2 cut(s)	124, 626
BalI	TGGCCA	2 cut(s)	504, 536
BamHI	GGATCC	1 cut(s)	335
BanI	GGYRCC	1 cut(s)	207
BarI	GAAGNNNNNNTAC	2 cut(s)	386, 418
BccI	CCATC	1 cut(s)	185
BcgI	CGANNNNNNTGC	2 cut(s)	6, 40
BciT130I	CCWGG	1 cut(s)	514
BclI	TGATCA	1 cut(s)	463
BcnI	CCSGG	3 cut(s)	409, 492, 612
BfaI	CTAG	1 cut(s)	688
BfmI	CTRYAG	1 cut(s)	181
BglII	AGATCT	2 cut(s)	19, 310
BisI	GCNGC	2 cut(s)	277, 622
BlsI	GCNGC	2 cut(s)	278, 623
Bme1390I	CCNGG	4 cut(s)	409, 492, 514, 612
Bme18I	GGWCC	2 cut(s)	124, 626
BmgT120I	GGNCC	3 cut(s)	124, 554, 626
BmiI	GGNNCC	4 cut(s)	126, 175, 209, 337
BmrFI	CCNGG	4 cut(s)	409, 492, 514, 612
BmsI	GCATC	1 cut(s)	122
BpuEI	CTTGAG	2 cut(s)	140, 440
BpuMI	CCSGG	3 cut(s)	409, 492, 612
BsaJI	CCNNGG	2 cut(s)	28, 651
BsaXI	ACNNNNNCTCC	4 cut(s)	389, 419, 647, 677
Bsc4I	CCNNNNNNNGG	1 cut(s)	478
Bse118I	RCCGGY	1 cut(s)	642
Bse1I	ACTGG	3 cut(s)	265, 423, 557
Bse3DI	GCAATG	1 cut(s)	47
BseBI	CCWGG	1 cut(s)	514
BseDI	CCNNGG	2 cut(s)	28, 651
BseGI	GGATG	1 cut(s)	647
BseLI	CCNNNNNNNGG	1 cut(s)	478
BseMI	GCAATG	1 cut(s)	47
BseNI	ACTGG	3 cut(s)	265, 423, 557
BseYI	CCCAGC	1 cut(s)	418
BsgI	GTGCAG	1 cut(s)	421
Bsh1236I	CGCG	1 cut(s)	276
BshFI	GGCC	4 cut(s)	264, 504, 536, 556
BshNI	GGYRCC	1 cut(s)	207
BsiSI	CCGG	4 cut(s)	408, 492, 612, 643
BslFI	GGGAC	3 cut(s)	267, 424, 545
BslI	CCNNNNNNNGG	1 cut(s)	478
BsmFI	GGGAC	3 cut(s)	267, 424, 545
BsnI	GGCC	4 cut(s)	264, 504, 536, 556
Bsp1407I	TGTACA	1 cut(s)	290
Bsp143I	GATC	4 cut(s)	19, 310, 335, 463
BspACI	CCGC	5 cut(s)	276, 333, 590, 621, 624
BspANI	GGCC	4 cut(s)	264, 504, 536, 556
BspFNI	CGCG	1 cut(s)	276
BspHI	TCATGA	1 cut(s)	214
BspLI	GGNNCC	4 cut(s)	126, 175, 209, 337
BspPI	GGATC	2 cut(s)	330, 343
BspT107I	GGYRCC	1 cut(s)	207
BsrBI	CCGCTC	1 cut(s)	333
BsrDI	GCAATG	1 cut(s)	47
BsrFI	RCCGGY	1 cut(s)	642
BsrGI	TGTACA	1 cut(s)	290
BsrI	ACTGG	3 cut(s)	265, 423, 557
BssAI	RCCGGY	1 cut(s)	642
BssECI	CCNNGG	2 cut(s)	28, 651
BssMI	GATC	4 cut(s)	19, 310, 335, 463
BssT1I	CCWWGG	1 cut(s)	28
Bst2UI	CCWGG	1 cut(s)	514
Bst4CI	ACNGT	2 cut(s)	596, 618
Bst6I	CTCTTC	1 cut(s)	629
BstAUI	TGTACA	1 cut(s)	290
BstC8I	GCNNGC	1 cut(s)	384
BstDEI	CTNAG	2 cut(s)	53, 307
BstDSI	CCRYGG	1 cut(s)	651
BstF5I	GGATG	1 cut(s)	647
BstFNI	CGCG	1 cut(s)	276
BstKTI	GATC	4 cut(s)	22, 313, 338, 466
BstMBI	GATC	4 cut(s)	19, 310, 335, 463
BstMWI	GCNNNNNNNGC	1 cut(s)	303
BstNI	CCWGG	1 cut(s)	514
BstSCI	CCNGG	4 cut(s)	407, 490, 512, 610
BstSFI	CTRYAG	1 cut(s)	181
BstUI	CGCG	1 cut(s)	276
BstX2I	RGATCY	3 cut(s)	19, 310, 335
BstYI	RGATCY	3 cut(s)	19, 310, 335
BsuRI	GGCC	4 cut(s)	264, 504, 536, 556
BtgI	CCRYGG	1 cut(s)	651
BtsCI	GGATG	1 cut(s)	647
BtsI	GCAGTG	1 cut(s)	82
BtsIMutI	CAGTG	2 cut(s)	82, 535
Cac8I	GCNNGC	1 cut(s)	384
CciI	TCATGA	1 cut(s)	214
Cfr10I	RCCGGY	1 cut(s)	642
Cfr13I	GGNCC	3 cut(s)	124, 554, 626
Csp6I	GTAC	2 cut(s)	291, 375
CviAII	CATG	2 cut(s)	147, 215
CviQI	GTAC	2 cut(s)	291, 375
DdeI	CTNAG	2 cut(s)	53, 307
DpnI	GATC	4 cut(s)	21, 312, 337, 465
DpnII	GATC	4 cut(s)	19, 310, 335, 463
EaeI	YGGCCR	2 cut(s)	502, 534
Eam1104I	CTCTTC	1 cut(s)	629
EarI	CTCTTC	1 cut(s)	629
Eco130I	CCWWGG	1 cut(s)	28
Eco32I	GATATC	2 cut(s)	88, 352
Eco47I	GGWCC	2 cut(s)	124, 626
Eco57I	CTGAAG	1 cut(s)	653
EcoO109I	RGGNCCY	1 cut(s)	124
EcoRII	CCWGG	1 cut(s)	512
EcoRV	GATATC	2 cut(s)	88, 352
EcoT14I	CCWWGG	1 cut(s)	28
ErhI	CCWWGG	1 cut(s)	28
FaeI	CATG	2 cut(s)	150, 218
FaiI	YATR	8 cut(s)	107, 137, 148, 216, 230, 284, 396, 600
FalI	AAGNNNNNCTT	2 cut(s)	102, 134
FaqI	GGGAC	3 cut(s)	267, 424, 545
FatI	CATG	2 cut(s)	146, 214
FbaI	TGATCA	1 cut(s)	463
Fnu4HI	GCNGC	2 cut(s)	277, 622
FokI	GGATG	1 cut(s)	634
Fsp4HI	GCNGC	2 cut(s)	277, 622
FspBI	CTAG	1 cut(s)	688
GluI	GCNGC	2 cut(s)	277, 622
GsaI	CCCAGC	1 cut(s)	422
HaeIII	GGCC	4 cut(s)	264, 504, 536, 556
HapII	CCGG	4 cut(s)	408, 492, 612, 643
Hin1II	CATG	2 cut(s)	150, 218
HincII	GTYRAC	1 cut(s)	141
HindII	GTYRAC	1 cut(s)	141
HindIII	AAGCTT	3 cut(s)	239, 295, 458
HinfI	GANTC	5 cut(s)	63, 195, 255, 360, 487
HpaI	GTTAAC	1 cut(s)	141
HpaII	CCGG	4 cut(s)	408, 492, 612, 643
HphI	GGTGA	1 cut(s)	157
Hpy166II	GTNNAC	3 cut(s)	14, 141, 680
Hpy188I	TCNGA	3 cut(s)	447, 486, 633
Hpy188III	TCNNGA	1 cut(s)	215
Hpy8I	GTNNAC	3 cut(s)	14, 141, 680
HpyAV	CCTTC	1 cut(s)	164
HpyCH4III	ACNGT	2 cut(s)	596, 618
HpyCH4IV	ACGT	1 cut(s)	377
HpyCH4V	TGCA	2 cut(s)	438, 602
HpyF10VI	GCNNNNNNNGC	1 cut(s)	303
HpyF3I	CTNAG	2 cut(s)	53, 307
HpySE526I	ACGT	1 cut(s)	377
Hsp92II	CATG	2 cut(s)	150, 218
Ksp22I	TGATCA	1 cut(s)	463
KspAI	GTTAAC	1 cut(s)	141
Kzo9I	GATC	4 cut(s)	19, 310, 335, 463
LweI	GCATC	1 cut(s)	122
MaeI	CTAG	1 cut(s)	688
MaeII	ACGT	1 cut(s)	377
MaeIII	GTNAC	1 cut(s)	583
MalI	GATC	4 cut(s)	21, 312, 337, 465
MbiI	CCGCTC	1 cut(s)	333
MboI	GATC	4 cut(s)	19, 310, 335, 463
MboII	GAAGA	2 cut(s)	536, 646
MflI	RGATCY	3 cut(s)	19, 310, 335
MlsI	TGGCCA	2 cut(s)	504, 536
MluCI	AATT	3 cut(s)	286, 498, 667
MluNI	TGGCCA	2 cut(s)	504, 536
MlyI	GAGTC	1 cut(s)	249
MmeI	TCCRAC	1 cut(s)	456
MnlI	CCTC	6 cut(s)	115, 222, 282, 398, 464, 639
Mox20I	TGGCCA	2 cut(s)	504, 536
MscI	TGGCCA	2 cut(s)	504, 536
MseI	TTAA	4 cut(s)	140, 299, 519, 665
MslI	CAYNNNNRTG	1 cut(s)	213
Msp20I	TGGCCA	2 cut(s)	504, 536
MspA1I	CMGCKG	1 cut(s)	590
MspI	CCGG	4 cut(s)	408, 492, 612, 643
MspR9I	CCNGG	4 cut(s)	409, 492, 514, 612
MvaI	CCWGG	1 cut(s)	514
MvnI	CGCG	1 cut(s)	276
MwoI	GCNNNNNNNGC	1 cut(s)	303
NciI	CCSGG	3 cut(s)	409, 492, 612
NdeII	GATC	4 cut(s)	19, 310, 335, 463
NlaIII	CATG	2 cut(s)	150, 218
NlaIV	GGNNCC	4 cut(s)	126, 175, 209, 337
PagI	TCATGA	1 cut(s)	214
PfeI	GAWTC	4 cut(s)	63, 195, 360, 487
PfoI	TCCNGGA	3 cut(s)	407, 490, 610
PkrI	GCNGC	2 cut(s)	278, 623
PleI	GAGTC	1 cut(s)	249
PpsI	GAGTC	1 cut(s)	249
PpuMI	RGGWCCY	1 cut(s)	124
PsiI	TTATAA	1 cut(s)	230
Psp5II	RGGWCCY	1 cut(s)	124
Psp6I	CCWGG	1 cut(s)	512
PspFI	CCCAGC	1 cut(s)	418
PspGI	CCWGG	1 cut(s)	512
PspN4I	GGNNCC	4 cut(s)	126, 175, 209, 337
PspPI	GGNCC	3 cut(s)	124, 554, 626
PspPPI	RGGWCCY	1 cut(s)	124
PsuI	RGATCY	3 cut(s)	19, 310, 335
RsaI	GTAC	2 cut(s)	292, 376
RsaNI	GTAC	2 cut(s)	291, 375
RseI	CAYNNNNRTG	1 cut(s)	213
SaqAI	TTAA	4 cut(s)	140, 299, 519, 665
SatI	GCNGC	2 cut(s)	277, 622
Sau3AI	GATC	4 cut(s)	19, 310, 335, 463
Sau96I	GGNCC	3 cut(s)	124, 554, 626
SchI	GAGTC	1 cut(s)	249
ScrFI	CCNGG	4 cut(s)	409, 492, 514, 612
SetI	ASST	7 cut(s)	175, 188, 243, 299, 380, 462, 477
SfaNI	GCATC	1 cut(s)	122
SfcI	CTRYAG	1 cut(s)	181
SinI	GGWCC	2 cut(s)	124, 626
SmiMI	CAYNNNNRTG	1 cut(s)	213
SmlI	CTYRAG	2 cut(s)	119, 455
SmoI	CTYRAG	2 cut(s)	119, 455
Sse9I	AATT	3 cut(s)	286, 498, 667
SsiI	CCGC	5 cut(s)	276, 333, 590, 621, 624
SspMI	CTAG	1 cut(s)	688
StyD4I	CCNGG	4 cut(s)	407, 490, 512, 610
StyI	CCWWGG	1 cut(s)	28
TaaI	ACNGT	2 cut(s)	596, 618
TaiI	ACGT	1 cut(s)	380
TaqI	TCGA	2 cut(s)	198, 317
TasI	AATT	3 cut(s)	286, 498, 667
TatI	WGTACW	1 cut(s)	290
TauI	GCSGC	2 cut(s)	279, 624
TfiI	GAWTC	4 cut(s)	63, 195, 360, 487
Tru1I	TTAA	4 cut(s)	140, 299, 519, 665
Tru9I	TTAA	4 cut(s)	140, 299, 519, 665
TscAI	CASTG	2 cut(s)	82, 535
TspDTI	ATGAA	2 cut(s)	135, 299
TspGWI	ACGGA	1 cut(s)	640
TspRI	CASTG	2 cut(s)	82, 535
VpaK11BI	GGWCC	2 cut(s)	124, 626
XspI	CTAG	1 cut(s)	688

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.