Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003453

Physical Location & Seq

Genomic Coordinates Reverse (-)

44438262 .. 44439174

Gene Structure 913 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG254400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGTTGTTGACTGGACGAGATCTTTGCAATGTTTTTCTTGCGGGTGTTTTCTTGTTATTGCTTAGTTGTAGATTCATTTCTGGTGTCGAGAGTGATATCAACTGCTTGAGAAGTATAAAAGCAACATTGGAGGACCCTTTAGGCATGTTAAACTCTTCATGGGATTTTAACAATAAGACCGAAGGTTTCATCTGTGACTTTCTGGGAATCGAGTGTTGGCACCCTCATGAAAGCAAAGTTATAAATATCGAGCTAGGGGATTTGGGACTCAAAGGCCAGTTTCCTCGCGGCGTTGTGAATTGTACAAGCTTAACAGGCTTAGATCTTTCAAGCAACGGCCTCAGTGGATCACTTCCCAGTGATATCCAAAAATTGATCCCTTTCATTACGTCGCTTGATCTCTCGTCCAACAGCTTCTCAGGGGAAATTCCGAATACCATCTCCAACTGTACTTTCCTGACTGTCCTTAAGCTTGACAACAATCAGTTCTCCGGTCAGATTCCTCAAGCAATTGGTCAGCTCAGTAGGCTTGGAACATTTAGCGTGGCCAACAATCGACTGTCTGGGCAAGTCCCCAACTTCAACAATGGTACAATCAATCCGGACAGCTATGCAAACAATAGGGGACTCCGCGGTGGTCCTTTCATGAAGAATTGCCAGTCATCATCTCAGAACAAGTCGTCAAATGATTTAGTGAGGGTTTTCAAGTCTTACAGTGTACTCATGTTGGGAGCACTCGGTTTTGTATATATACAACTCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010941 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0031348 GO:0033612 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0060548 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

254

Amino Acids

27.6

Weight (kDa)

6.7

Isoelectric Point (pI)

36.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003453)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04660 FvH4_2g17431
malus_domestica	MD05G1153200.v1.1 MD10G1147500.v1.1
prunus_persica	Prupe.8G186300_v2.0.a1 Prupe.8G186400_v2.0.a1 Prupe.8G186500_v2.0.a1 Prupe.8G186600_v2.0.a1
pyrus_communis	pycom05g14760 pycom10g12710 pycom10g12740
rosa_chinensis	RchiOBHm_Chr6g0281591 RchiOBHm_Chr6g0281611 RchiOBHm_Chr6g0282141
rosa_laevigata	RLG00000012906 RLG00000012907 RLG00000012959
rosa_multiflora	Rmu_sc0006897.1_g000004
rosa_roxburghii	Rroxscaffold_7G00186470
rosa_rugosa	Rorug06G0142000 Rorug06G0145600 Rorug06G0170000
rosa_samantha	Rh6AG047800 Rh6AG254400 Rh6AG258700 Rh6BG044300 Rh6BG257600 Rh6BG262000 Rh6BG262200 Rh6CG256700 Rh6CG261000 Rh6DG248500 Rh6DG248600 Rh6DG253000
rosa_wichuraiana	Rw6G022090 Rw6G022390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	242
AccB1I	GGYRCC	1 cut(s)	219
AccII	CGCG	2 cut(s)	288, 633
AccIII	TCCGGA	1 cut(s)	601
AciI	CCGC	4 cut(s)	41, 288, 631, 633
AclWI	GGATC	2 cut(s)	355, 370
AcoI	YGGCCR	1 cut(s)	546
AcsI	RAATTY	1 cut(s)	426
AfaI	GTAC	4 cut(s)	304, 451, 592, 720
AflII	CTTAAG	1 cut(s)	467
AgsI	TTSAA	3 cut(s)	330, 583, 706
AjuI	GAANNNNNNNTTGG	4 cut(s)	199, 231, 437, 469
AluBI	AGCT	6 cut(s)	253, 309, 414, 472, 520, 609
AluI	AGCT	6 cut(s)	253, 309, 414, 472, 520, 609
Alw21I	GWGCWC	1 cut(s)	736
AlwI	GGATC	2 cut(s)	355, 370
Aor13HI	TCCGGA	1 cut(s)	601
AoxI	GGCC	3 cut(s)	274, 337, 546
ApoI	RAATTY	1 cut(s)	426
ArsI	GACNNNNNNTTYG	1 cut(s)	38
AspS9I	GGNCC	2 cut(s)	133, 638
AvaII	GGWCC	2 cut(s)	133, 638
BalI	TGGCCA	1 cut(s)	548
BanI	GGYRCC	1 cut(s)	219
Bbv12I	GWGCWC	1 cut(s)	736
BccI	CCATC	1 cut(s)	446
BceAI	ACGGC	1 cut(s)	352
BcgI	CGANNNNNNTGC	2 cut(s)	6, 40
BfaI	CTAG	1 cut(s)	254
BfrI	CTTAAG	1 cut(s)	467
BglII	AGATCT	2 cut(s)	19, 322
BisI	GCNGC	1 cut(s)	289
BlsI	GCNGC	1 cut(s)	290
Bme18I	GGWCC	2 cut(s)	133, 638
BmgT120I	GGNCC	2 cut(s)	133, 638
BmiI	GGNNCC	2 cut(s)	135, 221
BmrI	ACTGGG	1 cut(s)	351
BmuI	ACTGGG	1 cut(s)	351
BpuEI	CTTGAG	3 cut(s)	127, 489, 743
BsaJI	CCNNGG	1 cut(s)	631
BsaWI	WCCGGW	2 cut(s)	491, 601
Bse1I	ACTGG	4 cut(s)	16, 277, 357, 658
Bse3DI	GCAATG	1 cut(s)	34
BseAI	TCCGGA	1 cut(s)	601
BseDI	CCNNGG	1 cut(s)	631
BseMI	GCAATG	1 cut(s)	34
BseMII	CTCAG	4 cut(s)	355, 432, 535, 683
BseNI	ACTGG	4 cut(s)	16, 277, 357, 658
Bsh1236I	CGCG	2 cut(s)	288, 633
BshFI	GGCC	3 cut(s)	276, 339, 548
BshNI	GGYRCC	1 cut(s)	219
BsiHKAI	GWGCWC	1 cut(s)	736
BsiSI	CCGG	2 cut(s)	492, 602
BslFI	GGGAC	3 cut(s)	279, 557, 639
BsmFI	GGGAC	3 cut(s)	279, 557, 639
BsnI	GGCC	3 cut(s)	276, 339, 548
Bsp1286I	GDGCHC	1 cut(s)	736
Bsp13I	TCCGGA	1 cut(s)	601
Bsp1407I	TGTACA	1 cut(s)	302
Bsp143I	GATC	5 cut(s)	19, 322, 347, 375, 397
BspACI	CCGC	4 cut(s)	41, 288, 631, 633
BspANI	GGCC	3 cut(s)	276, 339, 548
BspCNI	CTCAG	4 cut(s)	354, 431, 534, 682
BspEI	TCCGGA	1 cut(s)	601
BspFNI	CGCG	2 cut(s)	288, 633
BspHI	TCATGA	2 cut(s)	226, 645
BspLI	GGNNCC	2 cut(s)	135, 221
BspPI	GGATC	2 cut(s)	355, 370
BspT107I	GGYRCC	1 cut(s)	219
BspTI	CTTAAG	1 cut(s)	467
BsrDI	GCAATG	1 cut(s)	34
BsrGI	TGTACA	1 cut(s)	302
BsrI	ACTGG	4 cut(s)	16, 277, 357, 658
BssECI	CCNNGG	1 cut(s)	631
BssMI	GATC	5 cut(s)	19, 322, 347, 375, 397
Bst4CI	ACNGT	4 cut(s)	449, 463, 561, 716
Bst6I	CTCTTC	1 cut(s)	160
BstAFI	CTTAAG	1 cut(s)	467
BstAUI	TGTACA	1 cut(s)	302
BstDEI	CTNAG	6 cut(s)	62, 319, 341, 418, 521, 669
BstDSI	CCRYGG	1 cut(s)	631
BstFNI	CGCG	2 cut(s)	288, 633
BstKTI	GATC	5 cut(s)	22, 325, 350, 378, 400
BstMBI	GATC	5 cut(s)	19, 322, 347, 375, 397
BstMWI	GCNNNNNNNGC	2 cut(s)	315, 526
BstNSI	RCATGY	1 cut(s)	148
BstUI	CGCG	2 cut(s)	288, 633
BstX2I	RGATCY	2 cut(s)	19, 322
BstYI	RGATCY	2 cut(s)	19, 322
BsuRI	GGCC	3 cut(s)	276, 339, 548
BtgI	CCRYGG	1 cut(s)	631
BtsIMutI	CAGTG	3 cut(s)	349, 364, 721
CciI	TCATGA	2 cut(s)	226, 645
Cfr13I	GGNCC	2 cut(s)	133, 638
Cfr42I	CCGCGG	1 cut(s)	634
Csp6I	GTAC	4 cut(s)	303, 450, 591, 719
CviAII	CATG	5 cut(s)	145, 159, 227, 646, 724
CviQI	GTAC	4 cut(s)	303, 450, 591, 719
DdeI	CTNAG	6 cut(s)	62, 319, 341, 418, 521, 669
DpnI	GATC	5 cut(s)	21, 324, 349, 377, 399
DpnII	GATC	5 cut(s)	19, 322, 347, 375, 397
EaeI	YGGCCR	1 cut(s)	546
Eam1104I	CTCTTC	1 cut(s)	160
EarI	CTCTTC	1 cut(s)	160
Eco32I	GATATC	2 cut(s)	97, 364
Eco47I	GGWCC	2 cut(s)	133, 638
EcoO109I	RGGNCCY	1 cut(s)	133
EcoRV	GATATC	2 cut(s)	97, 364
FaeI	CATG	5 cut(s)	148, 162, 230, 649, 727
FaqI	GGGAC	3 cut(s)	279, 557, 639
FatI	CATG	5 cut(s)	144, 158, 226, 645, 723
FauI	CCCGC	1 cut(s)	34
Fnu4HI	GCNGC	1 cut(s)	289
Fsp4HI	GCNGC	1 cut(s)	289
FspBI	CTAG	1 cut(s)	254
GluI	GCNGC	1 cut(s)	289
HaeIII	GGCC	3 cut(s)	276, 339, 548
HapII	CCGG	2 cut(s)	492, 602
Hin1II	CATG	5 cut(s)	148, 162, 230, 649, 727
HincII	GTYRAC	1 cut(s)	9
HindII	GTYRAC	1 cut(s)	9
HindIII	AAGCTT	2 cut(s)	307, 470
HinfI	GANTC	5 cut(s)	72, 207, 267, 499, 627
HpaII	CCGG	2 cut(s)	492, 602
Hpy166II	GTNNAC	2 cut(s)	9, 719
Hpy188I	TCNGA	3 cut(s)	432, 498, 672
Hpy188III	TCNNGA	5 cut(s)	88, 227, 457, 602, 646
Hpy8I	GTNNAC	2 cut(s)	9, 719
Hpy99I	CGWCG	1 cut(s)	394
HpyAV	CCTTC	1 cut(s)	176
HpyCH4III	ACNGT	4 cut(s)	449, 463, 561, 716
HpyCH4IV	ACGT	1 cut(s)	389
HpyCH4V	TGCA	2 cut(s)	27, 614
HpyF10VI	GCNNNNNNNGC	2 cut(s)	315, 526
HpyF3I	CTNAG	6 cut(s)	62, 319, 341, 418, 521, 669
HpySE526I	ACGT	1 cut(s)	389
Hsp92II	CATG	5 cut(s)	148, 162, 230, 649, 727
Kpn2I	TCCGGA	1 cut(s)	601
KspI	CCGCGG	1 cut(s)	634
Kzo9I	GATC	5 cut(s)	19, 322, 347, 375, 397
LmnI	GCTCC	1 cut(s)	731
MaeI	CTAG	1 cut(s)	254
MaeII	ACGT	1 cut(s)	389
MaeIII	GTNAC	1 cut(s)	194
MalI	GATC	5 cut(s)	21, 324, 349, 377, 399
MboI	GATC	5 cut(s)	19, 322, 347, 375, 397
MboII	GAAGA	2 cut(s)	147, 661
MfeI	CAATTG	1 cut(s)	510
MflI	RGATCY	2 cut(s)	19, 322
MhlI	GDGCHC	1 cut(s)	736
MlsI	TGGCCA	1 cut(s)	548
MluCI	AATT	5 cut(s)	298, 371, 426, 510, 652
MluNI	TGGCCA	1 cut(s)	548
MlyI	GAGTC	2 cut(s)	261, 621
MmeI	TCCRAC	2 cut(s)	432, 468
MnlI	CCTC	6 cut(s)	124, 234, 294, 350, 513, 690
Mox20I	TGGCCA	1 cut(s)	548
MroI	TCCGGA	1 cut(s)	601
MscI	TGGCCA	1 cut(s)	548
MseI	TTAA	4 cut(s)	149, 168, 311, 468
MslI	CAYNNNNRTG	1 cut(s)	225
Msp20I	TGGCCA	1 cut(s)	548
MspA1I	CMGCKG	1 cut(s)	633
MspCI	CTTAAG	1 cut(s)	467
MspI	CCGG	2 cut(s)	492, 602
MunI	CAATTG	1 cut(s)	510
MvnI	CGCG	2 cut(s)	288, 633
MwoI	GCNNNNNNNGC	2 cut(s)	315, 526
NdeII	GATC	5 cut(s)	19, 322, 347, 375, 397
NlaIII	CATG	5 cut(s)	148, 162, 230, 649, 727
NlaIV	GGNNCC	2 cut(s)	135, 221
NmuCI	GTSAC	1 cut(s)	194
NspI	RCATGY	1 cut(s)	148
PagI	TCATGA	2 cut(s)	226, 645
PfeI	GAWTC	3 cut(s)	72, 207, 499
PkrI	GCNGC	1 cut(s)	290
PleI	GAGTC	2 cut(s)	261, 621
PpsI	GAGTC	2 cut(s)	261, 621
PpuMI	RGGWCCY	1 cut(s)	133
PsiI	TTATAA	1 cut(s)	242
Psp5II	RGGWCCY	1 cut(s)	133
PspN4I	GGNNCC	2 cut(s)	135, 221
PspPI	GGNCC	2 cut(s)	133, 638
PspPPI	RGGWCCY	1 cut(s)	133
PsuI	RGATCY	2 cut(s)	19, 322
RsaI	GTAC	4 cut(s)	304, 451, 592, 720
RsaNI	GTAC	4 cut(s)	303, 450, 591, 719
RseI	CAYNNNNRTG	1 cut(s)	225
SacII	CCGCGG	1 cut(s)	634
SaqAI	TTAA	4 cut(s)	149, 168, 311, 468
SatI	GCNGC	1 cut(s)	289
Sau3AI	GATC	5 cut(s)	19, 322, 347, 375, 397
Sau96I	GGNCC	2 cut(s)	133, 638
SchI	GAGTC	2 cut(s)	261, 621
SduI	GDGCHC	1 cut(s)	736
SetI	ASST	8 cut(s)	187, 255, 311, 392, 416, 474, 522, 611
Sfr303I	CCGCGG	1 cut(s)	634
SgrBI	CCGCGG	1 cut(s)	634
SinI	GGWCC	2 cut(s)	133, 638
SmiMI	CAYNNNNRTG	1 cut(s)	225
SmlI	CTYRAG	4 cut(s)	106, 467, 504, 758
SmoI	CTYRAG	4 cut(s)	106, 467, 504, 758
Sse9I	AATT	5 cut(s)	298, 371, 426, 510, 652
SsiI	CCGC	4 cut(s)	41, 288, 631, 633
SspMI	CTAG	1 cut(s)	254
TaaI	ACNGT	4 cut(s)	449, 463, 561, 716
TaiI	ACGT	1 cut(s)	392
TaqI	TCGA	4 cut(s)	87, 210, 249, 556
TaqII	GACCGA	1 cut(s)	194
TasI	AATT	5 cut(s)	298, 371, 426, 510, 652
TatI	WGTACW	3 cut(s)	302, 449, 718
TauI	GCSGC	1 cut(s)	291
TfiI	GAWTC	3 cut(s)	72, 207, 499
Tru1I	TTAA	4 cut(s)	149, 168, 311, 468
Tru9I	TTAA	4 cut(s)	149, 168, 311, 468
TscAI	CASTG	3 cut(s)	349, 364, 721
TseFI	GTSAC	1 cut(s)	194
Tsp45I	GTSAC	1 cut(s)	194
TspDTI	ATGAA	7 cut(s)	64, 147, 178, 243, 373, 634, 662
TspRI	CASTG	3 cut(s)	349, 364, 721
Vha464I	CTTAAG	1 cut(s)	467
VpaK11BI	GGWCC	2 cut(s)	133, 638
XapI	RAATTY	1 cut(s)	426
XceI	RCATGY	1 cut(s)	148
XspI	CTAG	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.