Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006897.1

Orthogroup ID

OG0003453

Physical Location & Seq

Genomic Coordinates Forward (+)

19428 .. 20072

Gene Structure 645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006897.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

atgttaaactcttcatgggattttaacaataagaccgaaggtttcatctgtaactttctgggaatcgagtgttggcaccctcatgaaagcaaagttataaatatcaagcttggggatttgggactcaaaggccagtttcctcgaggcgttatgaattgtacaagcttaacaggcttagatatttcaagcaacggcctcagtggatcacttcccagtgatatccataaattgatgcctttcgttacgtcgcttgatctctcgtccaacagcttctcagggccaattccccggaatatctccaattgtacttttctcaatgtccttaaacttgagaacaacaagttcacaggtcagattcctgcagaacttggtcagctcagtaggcttaaaacatttagcgtggccaataatcaactgtctgggccagtccccaccctcgaccgtgtccttacaatcggagaggacagctatgcaaacaatcctggactttgtggcgctcctttggaaagttgccaggcagctgcaaagaacaagttgtcaaatgatttagtgagggttttcaagtcttacactgtagtcatgttgggagcactcggttttggtattggttttgtttcctctttttcttttttcgtctttcgatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

214

Amino Acids

23.16

Weight (kDa)

8.22

Isoelectric Point (pI)

37.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003453)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04660 FvH4_2g17431
malus_domestica	MD05G1153200.v1.1 MD10G1147500.v1.1
prunus_persica	Prupe.8G186300_v2.0.a1 Prupe.8G186400_v2.0.a1 Prupe.8G186500_v2.0.a1 Prupe.8G186600_v2.0.a1
pyrus_communis	pycom05g14760 pycom10g12710 pycom10g12740
rosa_chinensis	RchiOBHm_Chr6g0281591 RchiOBHm_Chr6g0281611 RchiOBHm_Chr6g0282141
rosa_laevigata	RLG00000012906 RLG00000012907 RLG00000012959
rosa_multiflora	Rmu_sc0006897.1_g000004
rosa_roxburghii	Rroxscaffold_7G00186470
rosa_rugosa	Rorug06G0142000 Rorug06G0145600 Rorug06G0170000
rosa_samantha	Rh6AG047800 Rh6AG254400 Rh6AG258700 Rh6BG044300 Rh6BG257600 Rh6BG262000 Rh6BG262200 Rh6CG256700 Rh6CG261000 Rh6DG248500 Rh6DG248600 Rh6DG253000
rosa_wichuraiana	Rw6G022090 Rw6G022390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	98
AbsI	CCTCGAGG	1 cut(s)	141
AccB1I	GGYRCC	1 cut(s)	75
AclWI	GGATC	1 cut(s)	211
AcoI	YGGCCR	1 cut(s)	402
AfaI	GTAC	2 cut(s)	160, 307
AgsI	TTSAA	2 cut(s)	186, 562
AjnI	CCWGG	2 cut(s)	481, 513
AjuI	GAANNNNNNNTTGG	2 cut(s)	55, 87
AluBI	AGCT	6 cut(s)	109, 165, 270, 376, 468, 521
AluI	AGCT	6 cut(s)	109, 165, 270, 376, 468, 521
Alw21I	GWGCWC	1 cut(s)	592
AlwI	GGATC	1 cut(s)	211
Ama87I	CYCGRG	1 cut(s)	141
AoxI	GGCC	5 cut(s)	130, 193, 278, 402, 422
ApeKI	GCWGC	2 cut(s)	518, 521
AspLEI	GCGC	1 cut(s)	497
AspS9I	GGNCC	2 cut(s)	278, 422
AsuC2I	CCSGG	1 cut(s)	289
AvaI	CYCGRG	1 cut(s)	141
BalI	TGGCCA	1 cut(s)	404
BanI	GGYRCC	1 cut(s)	75
Bbv12I	GWGCWC	1 cut(s)	592
BbvI	GCAGC	2 cut(s)	508, 530
BceAI	ACGGC	1 cut(s)	208
BciT130I	CCWGG	2 cut(s)	483, 515
BcnI	CCSGG	1 cut(s)	289
BfmI	CTRYAG	2 cut(s)	360, 573
BfoI	RGCGCY	1 cut(s)	498
BisI	GCNGC	2 cut(s)	519, 522
BlsI	GCNGC	2 cut(s)	520, 523
Bme1390I	CCNGG	3 cut(s)	289, 483, 515
BmeT110I	CYCGRG	1 cut(s)	141
BmgT120I	GGNCC	2 cut(s)	278, 422
BmiI	GGNNCC	1 cut(s)	77
BmrFI	CCNGG	3 cut(s)	289, 483, 515
BmrI	ACTGGG	1 cut(s)	207
BmsI	GCATC	1 cut(s)	222
BmuI	ACTGGG	1 cut(s)	207
BpuEI	CTTGAG	1 cut(s)	350
BpuMI	CCSGG	1 cut(s)	289
BsaJI	CCNNGG	1 cut(s)	287
Bse1I	ACTGG	3 cut(s)	133, 213, 425
BseBI	CCWGG	2 cut(s)	483, 515
BseDI	CCNNGG	1 cut(s)	287
BseMII	CTCAG	3 cut(s)	211, 288, 391
BseNI	ACTGG	3 cut(s)	133, 213, 425
BseXI	GCAGC	2 cut(s)	508, 530
Bsh1285I	CGRYCG	1 cut(s)	442
BshFI	GGCC	5 cut(s)	132, 195, 280, 404, 424
BshNI	GGYRCC	1 cut(s)	75
BsiEI	CGRYCG	1 cut(s)	442
BsiHKAI	GWGCWC	1 cut(s)	592
BsiHKCI	CYCGRG	1 cut(s)	141
BsiSI	CCGG	1 cut(s)	289
BslFI	GGGAC	2 cut(s)	135, 413
BsmFI	GGGAC	2 cut(s)	135, 413
BsnI	GGCC	5 cut(s)	132, 195, 280, 404, 424
BsoBI	CYCGRG	1 cut(s)	141
Bsp1286I	GDGCHC	1 cut(s)	592
Bsp1407I	TGTACA	1 cut(s)	158
Bsp143I	GATC	2 cut(s)	203, 253
BspANI	GGCC	5 cut(s)	132, 195, 280, 404, 424
BspCNI	CTCAG	3 cut(s)	210, 287, 390
BspHI	TCATGA	1 cut(s)	82
BspLI	GGNNCC	1 cut(s)	77
BspMAI	CTGCAG	1 cut(s)	364
BspPI	GGATC	1 cut(s)	211
BspT107I	GGYRCC	1 cut(s)	75
BsrGI	TGTACA	1 cut(s)	158
BsrI	ACTGG	3 cut(s)	133, 213, 425
BssECI	CCNNGG	1 cut(s)	287
BssMI	GATC	2 cut(s)	203, 253
Bst2UI	CCWGG	2 cut(s)	483, 515
Bst4CI	ACNGT	3 cut(s)	417, 443, 574
Bst6I	CTCTTC	1 cut(s)	16
BstAUI	TGTACA	1 cut(s)	158
BstDEI	CTNAG	4 cut(s)	175, 197, 274, 377
BstH2I	RGCGCY	1 cut(s)	498
BstHHI	GCGC	1 cut(s)	497
BstKTI	GATC	2 cut(s)	206, 256
BstMBI	GATC	2 cut(s)	203, 253
BstMCI	CGRYCG	1 cut(s)	442
BstMWI	GCNNNNNNNGC	2 cut(s)	171, 382
BstNI	CCWGG	2 cut(s)	483, 515
BstSCI	CCNGG	3 cut(s)	287, 481, 513
BstSFI	CTRYAG	2 cut(s)	360, 573
BstV1I	GCAGC	2 cut(s)	508, 530
BsuRI	GGCC	5 cut(s)	132, 195, 280, 404, 424
BtsIMutI	CAGTG	3 cut(s)	205, 220, 570
CciI	TCATGA	1 cut(s)	82
CfoI	GCGC	1 cut(s)	497
Cfr13I	GGNCC	2 cut(s)	278, 422
Csp6I	GTAC	2 cut(s)	159, 306
CviAII	CATG	3 cut(s)	15, 83, 580
CviQI	GTAC	2 cut(s)	159, 306
DdeI	CTNAG	4 cut(s)	175, 197, 274, 377
DpnI	GATC	2 cut(s)	205, 255
DpnII	GATC	2 cut(s)	203, 253
EaeI	YGGCCR	1 cut(s)	402
Eam1104I	CTCTTC	1 cut(s)	16
EarI	CTCTTC	1 cut(s)	16
Eco32I	GATATC	1 cut(s)	220
Eco88I	CYCGRG	1 cut(s)	141
EcoRII	CCWGG	2 cut(s)	481, 513
EcoRV	GATATC	1 cut(s)	220
FaeI	CATG	3 cut(s)	18, 86, 583
FaiI	YATR	7 cut(s)	16, 84, 98, 152, 225, 471, 581
FaqI	GGGAC	2 cut(s)	135, 413
FatI	CATG	3 cut(s)	14, 82, 579
Fnu4HI	GCNGC	2 cut(s)	519, 522
Fsp4HI	GCNGC	2 cut(s)	519, 522
GlaI	GCGC	1 cut(s)	496
GluI	GCNGC	2 cut(s)	519, 522
HaeII	RGCGCY	1 cut(s)	498
HaeIII	GGCC	5 cut(s)	132, 195, 280, 404, 424
HapII	CCGG	1 cut(s)	289
HhaI	GCGC	1 cut(s)	497
Hin1II	CATG	3 cut(s)	18, 86, 583
Hin6I	GCGC	1 cut(s)	495
HinP1I	GCGC	1 cut(s)	495
HindIII	AAGCTT	2 cut(s)	107, 163
HinfI	GANTC	3 cut(s)	63, 123, 355
HpaII	CCGG	1 cut(s)	289
Hpy166II	GTNNAC	1 cut(s)	345
Hpy188I	TCNGA	2 cut(s)	354, 458
Hpy188III	TCNNGA	1 cut(s)	83
Hpy8I	GTNNAC	1 cut(s)	345
Hpy99I	CGWCG	1 cut(s)	250
HpyAV	CCTTC	1 cut(s)	32
HpyCH4III	ACNGT	3 cut(s)	417, 443, 574
HpyCH4IV	ACGT	1 cut(s)	245
HpyCH4V	TGCA	3 cut(s)	362, 473, 524
HpyF10VI	GCNNNNNNNGC	2 cut(s)	171, 382
HpyF3I	CTNAG	4 cut(s)	175, 197, 274, 377
HpySE526I	ACGT	1 cut(s)	245
Hsp92II	CATG	3 cut(s)	18, 86, 583
HspAI	GCGC	1 cut(s)	495
Kzo9I	GATC	2 cut(s)	203, 253
LmnI	GCTCC	2 cut(s)	502, 587
Lsp1109I	GCAGC	2 cut(s)	508, 530
LweI	GCATC	1 cut(s)	222
MaeII	ACGT	1 cut(s)	245
MaeIII	GTNAC	2 cut(s)	50, 241
MalI	GATC	2 cut(s)	205, 255
MboI	GATC	2 cut(s)	203, 253
MboII	GAAGA	1 cut(s)	3
MfeI	CAATTG	1 cut(s)	301
MhlI	GDGCHC	1 cut(s)	592
MlsI	TGGCCA	1 cut(s)	404
MluCI	AATT	4 cut(s)	154, 227, 282, 301
MluNI	TGGCCA	1 cut(s)	404
MlyI	GAGTC	1 cut(s)	117
MmeI	TCCRAC	1 cut(s)	288
MnlI	CCTC	8 cut(s)	90, 137, 150, 206, 446, 454, 546, 628
Mox20I	TGGCCA	1 cut(s)	404
MscI	TGGCCA	1 cut(s)	404
MseI	TTAA	5 cut(s)	5, 24, 167, 324, 387
MslI	CAYNNNNRTG	1 cut(s)	81
Msp20I	TGGCCA	1 cut(s)	404
MspA1I	CMGCKG	1 cut(s)	521
MspI	CCGG	1 cut(s)	289
MspR9I	CCNGG	3 cut(s)	289, 483, 515
MunI	CAATTG	1 cut(s)	301
MvaI	CCWGG	2 cut(s)	483, 515
MwoI	GCNNNNNNNGC	2 cut(s)	171, 382
NciI	CCSGG	1 cut(s)	289
NdeII	GATC	2 cut(s)	203, 253
NlaIII	CATG	3 cut(s)	18, 86, 583
NlaIV	GGNNCC	1 cut(s)	77
PaeR7I	CTCGAG	1 cut(s)	141
PagI	TCATGA	1 cut(s)	82
PfeI	GAWTC	2 cut(s)	63, 355
PflFI	GACNNNGTC	1 cut(s)	443
PfoI	TCCNGGA	1 cut(s)	481
PkrI	GCNGC	2 cut(s)	520, 523
PleI	GAGTC	1 cut(s)	117
PpsI	GAGTC	1 cut(s)	117
PsiI	TTATAA	1 cut(s)	98
Psp6I	CCWGG	2 cut(s)	481, 513
PspGI	CCWGG	2 cut(s)	481, 513
PspN4I	GGNNCC	1 cut(s)	77
PspPI	GGNCC	2 cut(s)	278, 422
PspXI	VCTCGAGB	1 cut(s)	141
PstI	CTGCAG	1 cut(s)	364
PsyI	GACNNNGTC	1 cut(s)	443
PvuII	CAGCTG	1 cut(s)	521
RsaI	GTAC	2 cut(s)	160, 307
RsaNI	GTAC	2 cut(s)	159, 306
RseI	CAYNNNNRTG	1 cut(s)	81
SaqAI	TTAA	5 cut(s)	5, 24, 167, 324, 387
SatI	GCNGC	2 cut(s)	519, 522
Sau3AI	GATC	2 cut(s)	203, 253
Sau96I	GGNCC	2 cut(s)	278, 422
SchI	GAGTC	1 cut(s)	117
ScrFI	CCNGG	3 cut(s)	289, 483, 515
SduI	GDGCHC	1 cut(s)	592
SetI	ASST	9 cut(s)	43, 111, 167, 248, 272, 352, 378, 470, 523
SfaNI	GCATC	1 cut(s)	222
SfcI	CTRYAG	2 cut(s)	360, 573
Sfr274I	CTCGAG	1 cut(s)	141
SlaI	CTCGAG	1 cut(s)	141
SmiMI	CAYNNNNRTG	1 cut(s)	81
SmlI	CTYRAG	2 cut(s)	141, 329
SmoI	CTYRAG	2 cut(s)	141, 329
Sse9I	AATT	4 cut(s)	154, 227, 282, 301
StyD4I	CCNGG	3 cut(s)	287, 481, 513
TaaI	ACNGT	3 cut(s)	417, 443, 574
TaiI	ACGT	1 cut(s)	248
TaqI	TCGA	4 cut(s)	66, 142, 438, 640
TaqII	GACCGA	1 cut(s)	50
TasI	AATT	4 cut(s)	154, 227, 282, 301
TatI	WGTACW	2 cut(s)	158, 305
TfiI	GAWTC	2 cut(s)	63, 355
Tru1I	TTAA	5 cut(s)	5, 24, 167, 324, 387
Tru9I	TTAA	5 cut(s)	5, 24, 167, 324, 387
TscAI	CASTG	3 cut(s)	205, 220, 577
TseI	GCWGC	2 cut(s)	518, 521
TspDTI	ATGAA	3 cut(s)	34, 99, 167
TspRI	CASTG	3 cut(s)	205, 220, 577
Tth111I	GACNNNGTC	1 cut(s)	443
XhoI	CTCGAG	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.