Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003453

Physical Location & Seq

Genomic Coordinates Reverse (-)

47096578 .. 47116587

Gene Structure 20010 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG257600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGACTGAGACAGCGGGCATTGTCAATTCGCACTCCGAAGAGTCCAAGTGGGGCACCACTAACAAAAGAGTACCAACTATGGCCACATTCATTTCTGGTGTCGAGAGTGATATCAACTGCTTGAGAAGTATAAAAGCATCACTGGAGGACCCTTTAGACATGTTAACCTCTTCATGGGATTTTAACAATGACACCGAAGGTTTCATCTGTAATTTTCTGGGAGTCGAGTGTTGGCACCCTTATGAAAGCAAAGTTATAAATATCAAGCTTGGGGATTTGGGACTCAAAGGCCAGTTTCCTCGCGGCGTTGTGAATTGTACAAGCTTAACAGGCTTAGATCTTTCAAGCAACGGCCTCAGTGGATCACTTCCCAGTGATATCCAAAAATTGATCCCTTTCATTACGTCGCTTGATCTCTCGTCCAACAGCTTCTCAGGGGAAATTCCGAATACCATCTCCAACTGTACTTTCCTGAATGTCCTTAAGCTTGACAACAATCAGTTCTCCGGTCAGATTCCTCAAGCAATTGGTCAGCTCAGTAGGCTTAGAACATTTAGCGTGGCCAACAATCGACTGTCTGGGCAAGTCCCCAACTTCAACAATGGCACAATCAATCCGGACAGCTATGCAAACAATAGGGGACTCTGCGGTGGTCCTTTCATGAAGAATTGCCTGTCATCATCTCAGAACAAGTCGTCAAATGATTTAGTGAGGACGAATTCGGATGCAAATGTAGGGATGAGGAGAATGGGAATTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010941 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0031348 GO:0033612 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0060548 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

253

Amino Acids

27.44

Weight (kDa)

5.47

Isoelectric Point (pI)

38.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	35 - 78	1.7e-06	Leucine rich repeat N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003453)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04660 FvH4_2g17431
malus_domestica	MD05G1153200.v1.1 MD10G1147500.v1.1
prunus_persica	Prupe.8G186300_v2.0.a1 Prupe.8G186400_v2.0.a1 Prupe.8G186500_v2.0.a1 Prupe.8G186600_v2.0.a1
pyrus_communis	pycom05g14760 pycom10g12710 pycom10g12740
rosa_chinensis	RchiOBHm_Chr6g0281591 RchiOBHm_Chr6g0281611 RchiOBHm_Chr6g0282141
rosa_laevigata	RLG00000012906 RLG00000012907 RLG00000012959
rosa_multiflora	Rmu_sc0006897.1_g000004
rosa_roxburghii	Rroxscaffold_7G00186470
rosa_rugosa	Rorug06G0142000 Rorug06G0145600 Rorug06G0170000
rosa_samantha	Rh6AG047800 Rh6AG254400 Rh6AG258700 Rh6BG044300 Rh6BG257600 Rh6BG262000 Rh6BG262200 Rh6CG256700 Rh6CG261000 Rh6DG248500 Rh6DG248600 Rh6DG253000
rosa_wichuraiana	Rw6G022090 Rw6G022390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	257
AccB1I	GGYRCC	2 cut(s)	53, 234
AccII	CGCG	1 cut(s)	303
AccIII	TCCGGA	1 cut(s)	616
AciI	CCGC	3 cut(s)	14, 303, 648
AclWI	GGATC	2 cut(s)	370, 385
AcoI	YGGCCR	2 cut(s)	81, 561
AcsI	RAATTY	2 cut(s)	441, 718
AfaI	GTAC	3 cut(s)	72, 319, 466
AfiI	CCNNNNNNNGG	1 cut(s)	174
AflII	CTTAAG	1 cut(s)	482
AflIII	ACRYGT	1 cut(s)	159
AgsI	TTSAA	2 cut(s)	345, 598
AjuI	GAANNNNNNNTTGG	2 cut(s)	452, 484
AluBI	AGCT	6 cut(s)	268, 324, 429, 487, 535, 624
AluI	AGCT	6 cut(s)	268, 324, 429, 487, 535, 624
Alw26I	GTCTC	1 cut(s)	2
AlwI	GGATC	2 cut(s)	370, 385
Aor13HI	TCCGGA	1 cut(s)	616
AoxI	GGCC	4 cut(s)	81, 289, 352, 561
ApoI	RAATTY	2 cut(s)	441, 718
AspS9I	GGNCC	2 cut(s)	148, 653
AvaII	GGWCC	2 cut(s)	148, 653
BaeGI	GKGCMC	1 cut(s)	56
BalI	TGGCCA	2 cut(s)	83, 563
BanI	GGYRCC	2 cut(s)	53, 234
BccI	CCATC	1 cut(s)	461
BceAI	ACGGC	1 cut(s)	367
BcoDI	GTCTC	1 cut(s)	2
BfrI	CTTAAG	1 cut(s)	482
BglII	AGATCT	1 cut(s)	337
BisI	GCNGC	1 cut(s)	304
BlsI	GCNGC	1 cut(s)	305
Bme18I	GGWCC	2 cut(s)	148, 653
BmgT120I	GGNCC	2 cut(s)	148, 653
BmiI	GGNNCC	3 cut(s)	55, 150, 236
BmrI	ACTGGG	1 cut(s)	366
BmsI	GCATC	2 cut(s)	146, 715
BmuI	ACTGGG	1 cut(s)	366
BpmI	CTGGAG	1 cut(s)	164
BpuEI	CTTGAG	2 cut(s)	142, 504
BsaWI	WCCGGW	2 cut(s)	506, 616
Bsc4I	CCNNNNNNNGG	1 cut(s)	174
Bse1I	ACTGG	3 cut(s)	147, 292, 372
BseAI	TCCGGA	1 cut(s)	616
BseGI	GGATG	2 cut(s)	730, 744
BseLI	CCNNNNNNNGG	1 cut(s)	174
BseMII	CTCAG	4 cut(s)	370, 447, 550, 698
BseNI	ACTGG	3 cut(s)	147, 292, 372
BseRI	GAGGAG	1 cut(s)	757
BseSI	GKGCMC	1 cut(s)	56
Bsh1236I	CGCG	1 cut(s)	303
BshFI	GGCC	4 cut(s)	83, 291, 354, 563
BshNI	GGYRCC	2 cut(s)	53, 234
BsiSI	CCGG	2 cut(s)	507, 617
BslFI	GGGAC	3 cut(s)	294, 572, 654
BslI	CCNNNNNNNGG	1 cut(s)	174
BsmAI	GTCTC	1 cut(s)	2
BsmFI	GGGAC	3 cut(s)	294, 572, 654
BsnI	GGCC	4 cut(s)	83, 291, 354, 563
Bsp1286I	GDGCHC	1 cut(s)	56
Bsp13I	TCCGGA	1 cut(s)	616
Bsp1407I	TGTACA	1 cut(s)	317
Bsp143I	GATC	4 cut(s)	337, 362, 390, 412
BspACI	CCGC	3 cut(s)	14, 303, 648
BspANI	GGCC	4 cut(s)	83, 291, 354, 563
BspCNI	CTCAG	4 cut(s)	369, 446, 549, 697
BspEI	TCCGGA	1 cut(s)	616
BspFNI	CGCG	1 cut(s)	303
BspHI	TCATGA	1 cut(s)	660
BspLI	GGNNCC	3 cut(s)	55, 150, 236
BspPI	GGATC	2 cut(s)	370, 385
BspT107I	GGYRCC	2 cut(s)	53, 234
BspTI	CTTAAG	1 cut(s)	482
BsrGI	TGTACA	1 cut(s)	317
BsrI	ACTGG	3 cut(s)	147, 292, 372
BssMI	GATC	4 cut(s)	337, 362, 390, 412
Bst4CI	ACNGT	2 cut(s)	464, 576
Bst6I	CTCTTC	2 cut(s)	33, 175
BstAFI	CTTAAG	1 cut(s)	482
BstAUI	TGTACA	1 cut(s)	317
BstC8I	GCNNGC	1 cut(s)	16
BstDEI	CTNAG	7 cut(s)	6, 334, 356, 433, 536, 545, 684
BstF5I	GGATG	2 cut(s)	730, 744
BstFNI	CGCG	1 cut(s)	303
BstKTI	GATC	4 cut(s)	340, 365, 393, 415
BstMAI	GTCTC	1 cut(s)	2
BstMBI	GATC	4 cut(s)	337, 362, 390, 412
BstMWI	GCNNNNNNNGC	2 cut(s)	330, 541
BstNSI	RCATGY	1 cut(s)	163
BstSLI	GKGCMC	1 cut(s)	56
BstUI	CGCG	1 cut(s)	303
BstX2I	RGATCY	1 cut(s)	337
BstYI	RGATCY	1 cut(s)	337
BsuRI	GGCC	4 cut(s)	83, 291, 354, 563
BtsCI	GGATG	2 cut(s)	730, 744
BtsIMutI	CAGTG	3 cut(s)	140, 364, 379
Cac8I	GCNNGC	1 cut(s)	16
CciI	TCATGA	1 cut(s)	660
Cfr13I	GGNCC	2 cut(s)	148, 653
Csp6I	GTAC	3 cut(s)	71, 318, 465
CviAII	CATG	3 cut(s)	160, 174, 661
CviQI	GTAC	3 cut(s)	71, 318, 465
DdeI	CTNAG	7 cut(s)	6, 334, 356, 433, 536, 545, 684
DpnI	GATC	4 cut(s)	339, 364, 392, 414
DpnII	GATC	4 cut(s)	337, 362, 390, 412
EaeI	YGGCCR	2 cut(s)	81, 561
Eam1104I	CTCTTC	2 cut(s)	33, 175
EarI	CTCTTC	2 cut(s)	33, 175
Eco32I	GATATC	2 cut(s)	112, 379
Eco47I	GGWCC	2 cut(s)	148, 653
EcoO109I	RGGNCCY	1 cut(s)	148
EcoRI	GAATTC	1 cut(s)	718
EcoRV	GATATC	2 cut(s)	112, 379
FaeI	CATG	3 cut(s)	163, 177, 664
FaiI	YATR	8 cut(s)	80, 131, 161, 175, 243, 257, 627, 662
FaqI	GGGAC	3 cut(s)	294, 572, 654
FatI	CATG	3 cut(s)	159, 173, 660
FauI	CCCGC	1 cut(s)	7
Fnu4HI	GCNGC	1 cut(s)	304
FokI	GGATG	2 cut(s)	737, 751
Fsp4HI	GCNGC	1 cut(s)	304
GluI	GCNGC	1 cut(s)	304
GsuI	CTGGAG	1 cut(s)	164
HaeIII	GGCC	4 cut(s)	83, 291, 354, 563
HapII	CCGG	2 cut(s)	507, 617
Hin1II	CATG	3 cut(s)	163, 177, 664
HincII	GTYRAC	1 cut(s)	165
HindII	GTYRAC	1 cut(s)	165
HindIII	AAGCTT	3 cut(s)	266, 322, 485
HinfI	GANTC	5 cut(s)	41, 222, 282, 514, 642
HpaI	GTTAAC	1 cut(s)	165
HpaII	CCGG	2 cut(s)	507, 617
Hpy166II	GTNNAC	1 cut(s)	165
Hpy188I	TCNGA	5 cut(s)	37, 447, 513, 687, 724
Hpy188III	TCNNGA	4 cut(s)	103, 472, 617, 661
Hpy8I	GTNNAC	1 cut(s)	165
Hpy99I	CGWCG	1 cut(s)	409
HpyAV	CCTTC	1 cut(s)	191
HpyCH4III	ACNGT	2 cut(s)	464, 576
HpyCH4IV	ACGT	1 cut(s)	404
HpyCH4V	TGCA	2 cut(s)	629, 728
HpyF10VI	GCNNNNNNNGC	2 cut(s)	330, 541
HpyF3I	CTNAG	7 cut(s)	6, 334, 356, 433, 536, 545, 684
HpySE526I	ACGT	1 cut(s)	404
Hsp92II	CATG	3 cut(s)	163, 177, 664
Kpn2I	TCCGGA	1 cut(s)	616
KspAI	GTTAAC	1 cut(s)	165
Kzo9I	GATC	4 cut(s)	337, 362, 390, 412
LweI	GCATC	2 cut(s)	146, 715
MaeII	ACGT	1 cut(s)	404
MalI	GATC	4 cut(s)	339, 364, 392, 414
MboI	GATC	4 cut(s)	337, 362, 390, 412
MboII	GAAGA	3 cut(s)	50, 162, 676
MfeI	CAATTG	1 cut(s)	525
MflI	RGATCY	1 cut(s)	337
MhlI	GDGCHC	1 cut(s)	56
MlsI	TGGCCA	2 cut(s)	83, 563
MluCI	AATT	9 cut(s)	25, 211, 313, 386, 441, 525, 667, 718, 753
MluNI	TGGCCA	2 cut(s)	83, 563
MlyI	GAGTC	4 cut(s)	50, 231, 276, 636
MmeI	TCCRAC	2 cut(s)	447, 483
MnlI	CCTC	7 cut(s)	139, 178, 309, 365, 528, 705, 735
Mox20I	TGGCCA	2 cut(s)	83, 563
MroI	TCCGGA	1 cut(s)	616
MscI	TGGCCA	2 cut(s)	83, 563
MseI	TTAA	4 cut(s)	164, 183, 326, 483
MslI	CAYNNNNRTG	1 cut(s)	240
Msp20I	TGGCCA	2 cut(s)	83, 563
MspA1I	CMGCKG	1 cut(s)	14
MspCI	CTTAAG	1 cut(s)	482
MspI	CCGG	2 cut(s)	507, 617
MunI	CAATTG	1 cut(s)	525
MvnI	CGCG	1 cut(s)	303
MwoI	GCNNNNNNNGC	2 cut(s)	330, 541
NdeII	GATC	4 cut(s)	337, 362, 390, 412
NlaIII	CATG	3 cut(s)	163, 177, 664
NlaIV	GGNNCC	3 cut(s)	55, 150, 236
NspI	RCATGY	1 cut(s)	163
PagI	TCATGA	1 cut(s)	660
PciI	ACATGT	1 cut(s)	159
PfeI	GAWTC	1 cut(s)	514
PkrI	GCNGC	1 cut(s)	305
PleI	GAGTC	4 cut(s)	49, 230, 276, 636
PpsI	GAGTC	4 cut(s)	49, 230, 276, 636
PpuMI	RGGWCCY	1 cut(s)	148
PscI	ACATGT	1 cut(s)	159
PsiI	TTATAA	1 cut(s)	257
Psp5II	RGGWCCY	1 cut(s)	148
PspN4I	GGNNCC	3 cut(s)	55, 150, 236
PspPI	GGNCC	2 cut(s)	148, 653
PspPPI	RGGWCCY	1 cut(s)	148
PsuI	RGATCY	1 cut(s)	337
RsaI	GTAC	3 cut(s)	72, 319, 466
RsaNI	GTAC	3 cut(s)	71, 318, 465
RseI	CAYNNNNRTG	1 cut(s)	240
SaqAI	TTAA	4 cut(s)	164, 183, 326, 483
SatI	GCNGC	1 cut(s)	304
Sau3AI	GATC	4 cut(s)	337, 362, 390, 412
Sau96I	GGNCC	2 cut(s)	148, 653
SchI	GAGTC	4 cut(s)	50, 231, 276, 636
SduI	GDGCHC	1 cut(s)	56
SetI	ASST	9 cut(s)	170, 202, 270, 326, 407, 431, 489, 537, 626
SfaNI	GCATC	2 cut(s)	146, 715
SinI	GGWCC	2 cut(s)	148, 653
SmiMI	CAYNNNNRTG	1 cut(s)	240
SmlI	CTYRAG	3 cut(s)	121, 482, 519
SmoI	CTYRAG	3 cut(s)	121, 482, 519
Sse9I	AATT	9 cut(s)	25, 211, 313, 386, 441, 525, 667, 718, 753
SsiI	CCGC	3 cut(s)	14, 303, 648
TaaI	ACNGT	2 cut(s)	464, 576
TaiI	ACGT	1 cut(s)	407
TaqI	TCGA	3 cut(s)	102, 225, 571
TasI	AATT	9 cut(s)	25, 211, 313, 386, 441, 525, 667, 718, 753
TatI	WGTACW	2 cut(s)	317, 464
TauI	GCSGC	1 cut(s)	306
TfiI	GAWTC	1 cut(s)	514
Tru1I	TTAA	4 cut(s)	164, 183, 326, 483
Tru9I	TTAA	4 cut(s)	164, 183, 326, 483
TscAI	CASTG	3 cut(s)	147, 364, 379
TspDTI	ATGAA	7 cut(s)	79, 162, 193, 258, 388, 649, 677
TspRI	CASTG	3 cut(s)	147, 364, 379
Vha464I	CTTAAG	1 cut(s)	482
VpaK11BI	GGWCC	2 cut(s)	148, 653
XapI	RAATTY	2 cut(s)	441, 718
XceI	RCATGY	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.