Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003453

Physical Location & Seq

Genomic Coordinates Reverse (-)

44921120 .. 44921725

Gene Structure 606 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25257

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGTTGTTGACTGGACGAGATCTTTGCAATGTTTTTCTTGCGGGTGTTTTCTTGTTATTGCTTAGTTGTAGATTCATTTCTGGTGTCGAGAGTGATATCAACTGCTTGAGAAGTATAAAAGCATCACTGGAGGACCCTTTAGGCATGTTAACCTCTTCATGGGATTTTAGCAATCCCACTGAAGGTTTCATCTGTAACTTTCTGGGAATCGAGTGTTGGCACCCTTATGAAAGCAAAGTTATAAATATCAAGCTTGGGGATTTGGGACTCAAAGGCCAGTTTCCTCGCGGCGTTGTGAATTGTACAAGCTTAACAGGCTTAGATCTTTCAAGCAACGGCCTCAGTGGATCACTTCCCAGTGATATCCTAAAATTGATCCCTTTCGTTACGTCGCTTGATCTCTCGTCCAACAGCTTCTCAGGGCCAATTCCCCGGAATATCTCCAATTGTACTTTTCTCAATGCCCTTAAACTTGTTGTTGTCAAGTTTACGGGTCAGATTCCTGCAGAACTGGTTCAGCTCAGTAGGCTTAAAATTAAACATTTAGCGTGGCCAACAATCAACTGTCTGGGTCAGTCCCCACCTTCAACGTTAAGGATGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010941 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0031348 GO:0033612 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0060548 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

201

Amino Acids

21.83

Weight (kDa)

8.13

Isoelectric Point (pI)

40.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	30 - 73	1.4e-06	Leucine rich repeat N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003453)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04660 FvH4_2g17431
malus_domestica	MD05G1153200.v1.1 MD10G1147500.v1.1
prunus_persica	Prupe.8G186300_v2.0.a1 Prupe.8G186400_v2.0.a1 Prupe.8G186500_v2.0.a1 Prupe.8G186600_v2.0.a1
pyrus_communis	pycom05g14760 pycom10g12710 pycom10g12740
rosa_chinensis	RchiOBHm_Chr6g0281591 RchiOBHm_Chr6g0281611 RchiOBHm_Chr6g0282141
rosa_laevigata	RLG00000012906 RLG00000012907 RLG00000012959
rosa_multiflora	Rmu_sc0006897.1_g000004
rosa_roxburghii	Rroxscaffold_7G00186470
rosa_rugosa	Rorug06G0142000 Rorug06G0145600 Rorug06G0170000
rosa_samantha	Rh6AG047800 Rh6AG254400 Rh6AG258700 Rh6BG044300 Rh6BG257600 Rh6BG262000 Rh6BG262200 Rh6CG256700 Rh6CG261000 Rh6DG248500 Rh6DG248600 Rh6DG253000
rosa_wichuraiana	Rw6G022090 Rw6G022390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	242
AccB1I	GGYRCC	1 cut(s)	219
AccII	CGCG	1 cut(s)	288
AciI	CCGC	2 cut(s)	41, 288
AclI	AACGTT	1 cut(s)	590
AclWI	GGATC	2 cut(s)	355, 370
AcoI	YGGCCR	1 cut(s)	551
AcuI	CTGAAG	1 cut(s)	201
AfaI	GTAC	2 cut(s)	304, 451
AfiI	CCNNNNNNNGG	2 cut(s)	159, 182
AgsI	TTSAA	2 cut(s)	330, 588
AjuI	GAANNNNNNNTTGG	2 cut(s)	199, 231
AluBI	AGCT	4 cut(s)	253, 309, 414, 520
AluI	AGCT	4 cut(s)	253, 309, 414, 520
AlwI	GGATC	2 cut(s)	355, 370
AoxI	GGCC	4 cut(s)	274, 337, 422, 551
ArsI	GACNNNNNNTTYG	1 cut(s)	38
Asp700I	GAANNNNTTC	1 cut(s)	513
AspS9I	GGNCC	2 cut(s)	133, 422
AsuC2I	CCSGG	1 cut(s)	433
AvaII	GGWCC	1 cut(s)	133
BalI	TGGCCA	1 cut(s)	553
BanI	GGYRCC	1 cut(s)	219
BccI	CCATC	1 cut(s)	592
BceAI	ACGGC	1 cut(s)	352
BcgI	CGANNNNNNTGC	2 cut(s)	6, 40
BcnI	CCSGG	1 cut(s)	433
BfmI	CTRYAG	1 cut(s)	504
BglII	AGATCT	2 cut(s)	19, 322
BisI	GCNGC	1 cut(s)	289
BlsI	GCNGC	1 cut(s)	290
Bme1390I	CCNGG	1 cut(s)	433
Bme18I	GGWCC	1 cut(s)	133
BmgT120I	GGNCC	2 cut(s)	133, 422
BmiI	GGNNCC	2 cut(s)	135, 221
BmrFI	CCNGG	1 cut(s)	433
BmrI	ACTGGG	1 cut(s)	351
BmsI	GCATC	1 cut(s)	131
BmuI	ACTGGG	1 cut(s)	351
BpmI	CTGGAG	1 cut(s)	149
BpuEI	CTTGAG	1 cut(s)	127
BpuMI	CCSGG	1 cut(s)	433
BsaJI	CCNNGG	1 cut(s)	431
Bsc4I	CCNNNNNNNGG	2 cut(s)	159, 182
Bse1I	ACTGG	5 cut(s)	16, 132, 277, 357, 516
Bse3DI	GCAATG	1 cut(s)	34
BseDI	CCNNGG	1 cut(s)	431
BseGI	GGATG	1 cut(s)	603
BseLI	CCNNNNNNNGG	2 cut(s)	159, 182
BseMI	GCAATG	1 cut(s)	34
BseMII	CTCAG	3 cut(s)	355, 432, 535
BseNI	ACTGG	5 cut(s)	16, 132, 277, 357, 516
Bsh1236I	CGCG	1 cut(s)	288
BshFI	GGCC	4 cut(s)	276, 339, 424, 553
BshNI	GGYRCC	1 cut(s)	219
BsiSI	CCGG	1 cut(s)	433
BslFI	GGGAC	2 cut(s)	279, 562
BslI	CCNNNNNNNGG	2 cut(s)	159, 182
BsmFI	GGGAC	2 cut(s)	279, 562
BsnI	GGCC	4 cut(s)	276, 339, 424, 553
Bsp1407I	TGTACA	1 cut(s)	302
Bsp143I	GATC	5 cut(s)	19, 322, 347, 375, 397
BspACI	CCGC	2 cut(s)	41, 288
BspANI	GGCC	4 cut(s)	276, 339, 424, 553
BspCNI	CTCAG	3 cut(s)	354, 431, 534
BspFNI	CGCG	1 cut(s)	288
BspLI	GGNNCC	2 cut(s)	135, 221
BspMAI	CTGCAG	1 cut(s)	508
BspPI	GGATC	2 cut(s)	355, 370
BspT107I	GGYRCC	1 cut(s)	219
BsrDI	GCAATG	1 cut(s)	34
BsrGI	TGTACA	1 cut(s)	302
BsrI	ACTGG	5 cut(s)	16, 132, 277, 357, 516
BssECI	CCNNGG	1 cut(s)	431
BssMI	GATC	5 cut(s)	19, 322, 347, 375, 397
Bst4CI	ACNGT	1 cut(s)	566
Bst6I	CTCTTC	1 cut(s)	160
BstAUI	TGTACA	1 cut(s)	302
BstDEI	CTNAG	5 cut(s)	62, 319, 341, 418, 521
BstF5I	GGATG	1 cut(s)	603
BstFNI	CGCG	1 cut(s)	288
BstKTI	GATC	5 cut(s)	22, 325, 350, 378, 400
BstMBI	GATC	5 cut(s)	19, 322, 347, 375, 397
BstMWI	GCNNNNNNNGC	2 cut(s)	315, 526
BstNSI	RCATGY	1 cut(s)	148
BstSCI	CCNGG	1 cut(s)	431
BstSFI	CTRYAG	1 cut(s)	504
BstUI	CGCG	1 cut(s)	288
BstX2I	RGATCY	2 cut(s)	19, 322
BstYI	RGATCY	2 cut(s)	19, 322
BsuRI	GGCC	4 cut(s)	276, 339, 424, 553
BtsCI	GGATG	1 cut(s)	603
BtsIMutI	CAGTG	4 cut(s)	125, 177, 349, 364
Cfr13I	GGNCC	2 cut(s)	133, 422
Csp6I	GTAC	2 cut(s)	303, 450
CviAII	CATG	2 cut(s)	145, 159
CviQI	GTAC	2 cut(s)	303, 450
DdeI	CTNAG	5 cut(s)	62, 319, 341, 418, 521
DpnI	GATC	5 cut(s)	21, 324, 349, 377, 399
DpnII	GATC	5 cut(s)	19, 322, 347, 375, 397
EaeI	YGGCCR	1 cut(s)	551
Eam1104I	CTCTTC	1 cut(s)	160
EarI	CTCTTC	1 cut(s)	160
Eco32I	GATATC	2 cut(s)	97, 364
Eco47I	GGWCC	1 cut(s)	133
Eco57I	CTGAAG	1 cut(s)	201
EcoO109I	RGGNCCY	1 cut(s)	133
EcoRV	GATATC	2 cut(s)	97, 364
FaeI	CATG	2 cut(s)	148, 162
FaiI	YATR	6 cut(s)	116, 146, 160, 228, 242, 604
FaqI	GGGAC	2 cut(s)	279, 562
FatI	CATG	2 cut(s)	144, 158
FauI	CCCGC	1 cut(s)	34
Fnu4HI	GCNGC	1 cut(s)	289
Fsp4HI	GCNGC	1 cut(s)	289
GluI	GCNGC	1 cut(s)	289
GsuI	CTGGAG	1 cut(s)	149
HaeIII	GGCC	4 cut(s)	276, 339, 424, 553
HapII	CCGG	1 cut(s)	433
Hin1II	CATG	2 cut(s)	148, 162
HincII	GTYRAC	2 cut(s)	9, 150
HindII	GTYRAC	2 cut(s)	9, 150
HindIII	AAGCTT	2 cut(s)	251, 307
HinfI	GANTC	4 cut(s)	72, 207, 267, 499
HpaI	GTTAAC	1 cut(s)	150
HpaII	CCGG	1 cut(s)	433
Hpy166II	GTNNAC	3 cut(s)	9, 150, 489
Hpy188I	TCNGA	1 cut(s)	498
Hpy188III	TCNNGA	1 cut(s)	88
Hpy8I	GTNNAC	3 cut(s)	9, 150, 489
Hpy99I	CGWCG	1 cut(s)	394
HpyAV	CCTTC	2 cut(s)	176, 594
HpyCH4III	ACNGT	1 cut(s)	566
HpyCH4IV	ACGT	2 cut(s)	389, 590
HpyCH4V	TGCA	2 cut(s)	27, 506
HpyF10VI	GCNNNNNNNGC	2 cut(s)	315, 526
HpyF3I	CTNAG	5 cut(s)	62, 319, 341, 418, 521
HpySE526I	ACGT	2 cut(s)	389, 590
Hsp92II	CATG	2 cut(s)	148, 162
KspAI	GTTAAC	1 cut(s)	150
Kzo9I	GATC	5 cut(s)	19, 322, 347, 375, 397
LweI	GCATC	1 cut(s)	131
MaeII	ACGT	2 cut(s)	389, 590
MaeIII	GTNAC	2 cut(s)	194, 385
MalI	GATC	5 cut(s)	21, 324, 349, 377, 399
MboI	GATC	5 cut(s)	19, 322, 347, 375, 397
MboII	GAAGA	1 cut(s)	147
MfeI	CAATTG	1 cut(s)	445
MflI	RGATCY	2 cut(s)	19, 322
MlsI	TGGCCA	1 cut(s)	553
MluCI	AATT	5 cut(s)	298, 371, 426, 445, 534
MluNI	TGGCCA	1 cut(s)	553
MlyI	GAGTC	1 cut(s)	261
MmeI	TCCRAC	1 cut(s)	432
MnlI	CCTC	4 cut(s)	124, 163, 294, 350
Mox20I	TGGCCA	1 cut(s)	553
MroXI	GAANNNNTTC	1 cut(s)	513
MscI	TGGCCA	1 cut(s)	553
MseI	TTAA	6 cut(s)	149, 311, 468, 531, 537, 593
MslI	CAYNNNNRTG	1 cut(s)	225
Msp20I	TGGCCA	1 cut(s)	553
MspI	CCGG	1 cut(s)	433
MspR9I	CCNGG	1 cut(s)	433
MunI	CAATTG	1 cut(s)	445
MvnI	CGCG	1 cut(s)	288
MwoI	GCNNNNNNNGC	2 cut(s)	315, 526
NciI	CCSGG	1 cut(s)	433
NdeII	GATC	5 cut(s)	19, 322, 347, 375, 397
NlaIII	CATG	2 cut(s)	148, 162
NlaIV	GGNNCC	2 cut(s)	135, 221
NspI	RCATGY	1 cut(s)	148
PdmI	GAANNNNTTC	1 cut(s)	513
PfeI	GAWTC	3 cut(s)	72, 207, 499
PkrI	GCNGC	1 cut(s)	290
PleI	GAGTC	1 cut(s)	261
PpsI	GAGTC	1 cut(s)	261
PpuMI	RGGWCCY	1 cut(s)	133
PsiI	TTATAA	1 cut(s)	242
Psp1406I	AACGTT	1 cut(s)	590
Psp5II	RGGWCCY	1 cut(s)	133
PspN4I	GGNNCC	2 cut(s)	135, 221
PspPI	GGNCC	2 cut(s)	133, 422
PspPPI	RGGWCCY	1 cut(s)	133
PstI	CTGCAG	1 cut(s)	508
PsuI	RGATCY	2 cut(s)	19, 322
RsaI	GTAC	2 cut(s)	304, 451
RsaNI	GTAC	2 cut(s)	303, 450
RseI	CAYNNNNRTG	1 cut(s)	225
SaqAI	TTAA	6 cut(s)	149, 311, 468, 531, 537, 593
SatI	GCNGC	1 cut(s)	289
Sau3AI	GATC	5 cut(s)	19, 322, 347, 375, 397
Sau96I	GGNCC	2 cut(s)	133, 422
SchI	GAGTC	1 cut(s)	261
ScrFI	CCNGG	1 cut(s)	433
SetI	ASST	9 cut(s)	155, 187, 255, 311, 392, 416, 522, 586, 593
SfaNI	GCATC	1 cut(s)	131
SfcI	CTRYAG	1 cut(s)	504
SinI	GGWCC	1 cut(s)	133
SmiMI	CAYNNNNRTG	1 cut(s)	225
SmlI	CTYRAG	1 cut(s)	106
SmoI	CTYRAG	1 cut(s)	106
Sse9I	AATT	5 cut(s)	298, 371, 426, 445, 534
SsiI	CCGC	2 cut(s)	41, 288
StyD4I	CCNGG	1 cut(s)	431
TaaI	ACNGT	1 cut(s)	566
TaiI	ACGT	2 cut(s)	392, 593
TaqI	TCGA	2 cut(s)	87, 210
TasI	AATT	5 cut(s)	298, 371, 426, 445, 534
TatI	WGTACW	2 cut(s)	302, 449
TauI	GCSGC	1 cut(s)	291
TfiI	GAWTC	3 cut(s)	72, 207, 499
Tru1I	TTAA	6 cut(s)	149, 311, 468, 531, 537, 593
Tru9I	TTAA	6 cut(s)	149, 311, 468, 531, 537, 593
TscAI	CASTG	4 cut(s)	132, 184, 349, 364
TspDTI	ATGAA	4 cut(s)	64, 147, 178, 243
TspRI	CASTG	4 cut(s)	132, 184, 349, 364
VpaK11BI	GGWCC	1 cut(s)	133
XceI	RCATGY	1 cut(s)	148
XmnI	GAANNNNTTC	1 cut(s)	513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.