Rh6BG044300
NAC Family

Probably inactive leucine-rich repeat receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0003453
Physical Location & Seq
Forward (+)
7071056 .. 7071391
336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG044300.1

Sequence Viewer

Length: 336 bp
ATGGCTTATCTTGTCATTTTTGTGCTCTTGTTATTGCTTAGTTGTAGGTTCAGCCATGGTGTTGAGAGTGATATAAACTGCTTGAGAAGTATAAAATCAACATTGGAGGACCCTTTAGGAATGTTAACCTCTTCATGGGATTTTAACAATGCCACCGAAGTATTCATCTGTAAGTTTCTGGGAATTGAGTGTTGGCACCCTGATGAGAGCAGAGTTTTAAACGTCAACCTTGCGGATTTGGGACTCAAAAGGCCAGTTTCCTCGTGGTGTAGTGAATTGTACAAGCTTAACAGGCTTAGATCTTTCGAGCAACAACCTCAGTTGACCTATTCCTGA

Protein Analysis

111

Amino Acids

12.78

Weight (kDa)

5.59

Isoelectric Point (pI)

59.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 22 - 65 9.5e-06 Leucine rich repeat N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 195
AciI CCGC 1 cut(s) 233
AfaI GTAC 1 cut(s) 281
AfiI CCNNNNNNNGG 1 cut(s) 135
AjuI GAANNNNNNNTTGG 2 cut(s) 175, 207
AluBI AGCT 1 cut(s) 286
AluI AGCT 1 cut(s) 286
Alw21I GWGCWC 1 cut(s) 27
AoxI GGCC 1 cut(s) 251
AspS9I GGNCC 1 cut(s) 109
AvaII GGWCC 1 cut(s) 109
BanI GGYRCC 1 cut(s) 195
BauI CACGAG 1 cut(s) 262
Bbv12I GWGCWC 1 cut(s) 27
BglII AGATCT 1 cut(s) 299
Bme18I GGWCC 1 cut(s) 109
BmgT120I GGNCC 1 cut(s) 109
BmiI GGNNCC 2 cut(s) 111, 197
BpuEI CTTGAG 1 cut(s) 103
BsaJI CCNNGG 1 cut(s) 55
Bsc4I CCNNNNNNNGG 1 cut(s) 135
Bse1I ACTGG 1 cut(s) 254
BseDI CCNNGG 1 cut(s) 55
BseLI CCNNNNNNNGG 1 cut(s) 135
BseMII CTCAG 1 cut(s) 332
BseNI ACTGG 1 cut(s) 254
BshFI GGCC 1 cut(s) 253
BshNI GGYRCC 1 cut(s) 195
BsiHKAI GWGCWC 1 cut(s) 27
BslFI GGGAC 1 cut(s) 255
BslI CCNNNNNNNGG 1 cut(s) 135
BsmFI GGGAC 1 cut(s) 255
BsnI GGCC 1 cut(s) 253
Bsp1286I GDGCHC 1 cut(s) 27
Bsp1407I TGTACA 1 cut(s) 279
Bsp143I GATC 1 cut(s) 299
Bsp19I CCATGG 1 cut(s) 55
BspACI CCGC 1 cut(s) 233
BspANI GGCC 1 cut(s) 253
BspCNI CTCAG 1 cut(s) 331
BspLI GGNNCC 2 cut(s) 111, 197
BspT107I GGYRCC 1 cut(s) 195
BsrGI TGTACA 1 cut(s) 279
BsrI ACTGG 1 cut(s) 254
BssECI CCNNGG 1 cut(s) 55
BssMI GATC 1 cut(s) 299
BssSI CACGAG 1 cut(s) 262
BssT1I CCWWGG 1 cut(s) 55
Bst2BI CACGAG 1 cut(s) 262
Bst6I CTCTTC 1 cut(s) 136
BstAUI TGTACA 1 cut(s) 279
BstDEI CTNAG 3 cut(s) 38, 296, 318
BstDSI CCRYGG 1 cut(s) 55
BstKTI GATC 1 cut(s) 302
BstMBI GATC 1 cut(s) 299
BstMWI GCNNNNNNNGC 1 cut(s) 292
BstX2I RGATCY 1 cut(s) 299
BstYI RGATCY 1 cut(s) 299
BsuRI GGCC 1 cut(s) 253
BtgI CCRYGG 1 cut(s) 55
Cfr13I GGNCC 1 cut(s) 109
Csp6I GTAC 1 cut(s) 280
CviAII CATG 2 cut(s) 56, 135
CviJI RGCY 5 cut(s) 5, 54, 253, 286, 295
CviKI_1 RGCY 5 cut(s) 5, 54, 253, 286, 295
CviQI GTAC 1 cut(s) 280
DdeI CTNAG 3 cut(s) 38, 296, 318
DpnI GATC 1 cut(s) 301
DpnII GATC 1 cut(s) 299
DraI TTTAAA 1 cut(s) 219
Eam1104I CTCTTC 1 cut(s) 136
EarI CTCTTC 1 cut(s) 136
Eco130I CCWWGG 1 cut(s) 55
Eco47I GGWCC 1 cut(s) 109
EcoO109I RGGNCCY 1 cut(s) 109
EcoT14I CCWWGG 1 cut(s) 55
ErhI CCWWGG 1 cut(s) 55
FaeI CATG 2 cut(s) 59, 138
FaiI YATR 4 cut(s) 57, 74, 92, 136
FaqI GGGAC 1 cut(s) 255
FatI CATG 2 cut(s) 55, 134
HaeIII GGCC 1 cut(s) 253
Hin1II CATG 2 cut(s) 59, 138
HincII GTYRAC 3 cut(s) 126, 226, 324
HindII GTYRAC 3 cut(s) 126, 226, 324
HindIII AAGCTT 1 cut(s) 284
HinfI GANTC 1 cut(s) 243
HpaI GTTAAC 1 cut(s) 126
Hpy166II GTNNAC 3 cut(s) 126, 226, 324
Hpy188III TCNNGA 1 cut(s) 333
Hpy8I GTNNAC 3 cut(s) 126, 226, 324
HpyCH4IV ACGT 1 cut(s) 222
HpyF10VI GCNNNNNNNGC 1 cut(s) 292
HpyF3I CTNAG 3 cut(s) 38, 296, 318
HpySE526I ACGT 1 cut(s) 222
Hsp92II CATG 2 cut(s) 59, 138
KspAI GTTAAC 1 cut(s) 126
Kzo9I GATC 1 cut(s) 299
LpnPI CCDG 4 cut(s) 164, 213, 267, 277
MaeII ACGT 1 cut(s) 222
MalI GATC 1 cut(s) 301
MboI GATC 1 cut(s) 299
MboII GAAGA 1 cut(s) 123
MflI RGATCY 1 cut(s) 299
MhlI GDGCHC 1 cut(s) 27
MluCI AATT 2 cut(s) 183, 275
MlyI GAGTC 1 cut(s) 237
MnlI CCTC 4 cut(s) 100, 139, 271, 327
MseI TTAA 4 cut(s) 125, 144, 218, 288
MslI CAYNNNNRTG 2 cut(s) 20, 201
MwoI GCNNNNNNNGC 1 cut(s) 292
NcoI CCATGG 1 cut(s) 55
NdeII GATC 1 cut(s) 299
NlaIII CATG 2 cut(s) 59, 138
NlaIV GGNNCC 2 cut(s) 111, 197
PleI GAGTC 1 cut(s) 237
PpsI GAGTC 1 cut(s) 237
PpuMI RGGWCCY 1 cut(s) 109
Psp5II RGGWCCY 1 cut(s) 109
PspN4I GGNNCC 2 cut(s) 111, 197
PspPI GGNCC 1 cut(s) 109
PspPPI RGGWCCY 1 cut(s) 109
PsuI RGATCY 1 cut(s) 299
RsaI GTAC 1 cut(s) 281
RsaNI GTAC 1 cut(s) 280
RseI CAYNNNNRTG 2 cut(s) 20, 201
SaqAI TTAA 4 cut(s) 125, 144, 218, 288
Sau3AI GATC 1 cut(s) 299
Sau96I GGNCC 1 cut(s) 109
SchI GAGTC 1 cut(s) 237
SduI GDGCHC 1 cut(s) 27
SetI ASST 7 cut(s) 50, 131, 225, 231, 288, 319, 329
SinI GGWCC 1 cut(s) 109
SmiMI CAYNNNNRTG 2 cut(s) 20, 201
SmlI CTYRAG 1 cut(s) 82
SmoI CTYRAG 1 cut(s) 82
Sse9I AATT 2 cut(s) 183, 275
SsiI CCGC 1 cut(s) 233
StyI CCWWGG 1 cut(s) 55
TaiI ACGT 1 cut(s) 225
TaqI TCGA 1 cut(s) 306
TasI AATT 2 cut(s) 183, 275
TatI WGTACW 1 cut(s) 279
Tru1I TTAA 4 cut(s) 125, 144, 218, 288
Tru9I TTAA 4 cut(s) 125, 144, 218, 288
TspDTI ATGAA 2 cut(s) 123, 154
VpaK11BI GGWCC 1 cut(s) 109
XcmI CCANNNNNNNNNTGG 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.