Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003453

Physical Location & Seq

Genomic Coordinates Forward (+)

23719910 .. 23720596

Gene Structure 687 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012906

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGTTGTTGAGTGGACGAGATCTCTGCCTTGGAGTTGTTTTCTTGTTATTGCTTAGTTGTGGATTCAGTTCTGGCGGTGAGAGTGATATCAACTGCTTGAAAAGTATAAAAGCATCACTTGAGTTGGATATGTTAACCTCTTCATGGGATTTCAGCAACATCACCGAAGGTTCCATCTGTAGATTTCTGGGAGTGGAGTGTTGGCATCCTAATGAGAACAAAGTGCTGAATATCAACCTTTCGAATTTGGGACTCAAGGGCCAATTTCCTCGCGGCATAGCGAATTGTACAAGCTTAACAGGCTTAGATCTTTCGAGCAACAAGTTGAGCGGATCCATTCCCGCTGATATCAGTAGAATCATTCCATTCAGTACGTTGCTTGGCCTCTCGTATAACAACTTCTCCGGGACAATCCCAGCCAGTATTTCCAACTGCACTTATCTGAATGTCCTCAAGCTTGATCACAACCAGCTATCGGGTCAGATTCCCGGAGAAATTGGCCAACTTTCCAGGCTTAAAACATTCAGTGTGGCCAACAATCTTCTGCATGGGCCAGTCCCAGACTTCGTTGCGGCTTCGGTTACAGCGGACAGTTACGCAAACAATCCCGGACTCTGCGGCGGTCCTCTGAAGAGTTGCCGGTCATCCGTGGAGAAGTCGTTAAATTGTTCAAGTCCACCACACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010941 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0031348 GO:0033612 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0060548 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

229

Amino Acids

24.17

Weight (kDa)

6.4

Isoelectric Point (pI)

38.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003453)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04660 FvH4_2g17431
malus_domestica	MD05G1153200.v1.1 MD10G1147500.v1.1
prunus_persica	Prupe.8G186300_v2.0.a1 Prupe.8G186400_v2.0.a1 Prupe.8G186500_v2.0.a1 Prupe.8G186600_v2.0.a1
pyrus_communis	pycom05g14760 pycom10g12710 pycom10g12740
rosa_chinensis	RchiOBHm_Chr6g0281591 RchiOBHm_Chr6g0281611 RchiOBHm_Chr6g0282141
rosa_laevigata	RLG00000012906 RLG00000012907 RLG00000012959
rosa_multiflora	Rmu_sc0006897.1_g000004
rosa_roxburghii	Rroxscaffold_7G00186470
rosa_rugosa	Rorug06G0142000 Rorug06G0145600 Rorug06G0170000
rosa_samantha	Rh6AG047800 Rh6AG254400 Rh6AG258700 Rh6BG044300 Rh6BG257600 Rh6BG262000 Rh6BG262200 Rh6CG256700 Rh6CG261000 Rh6DG248500 Rh6DG248600 Rh6DG253000
rosa_wichuraiana	Rw6G022090 Rw6G022390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	330
AccII	CGCG	1 cut(s)	273
AciI	CCGC	8 cut(s)	75, 273, 330, 342, 572, 587, 618, 621
AclWI	GGATC	2 cut(s)	327, 340
AcoI	YGGCCR	2 cut(s)	499, 531
AcsI	RAATTY	1 cut(s)	244
AcuI	CTGAAG	1 cut(s)	650
AfaI	GTAC	2 cut(s)	289, 373
AfiI	CCNNNNNNNGG	2 cut(s)	144, 475
AgsI	TTSAA	2 cut(s)	100, 672
AjnI	CCWGG	1 cut(s)	509
AluBI	AGCT	3 cut(s)	294, 457, 472
AluI	AGCT	3 cut(s)	294, 457, 472
AlwI	GGATC	2 cut(s)	327, 340
AoxI	GGCC	5 cut(s)	259, 382, 499, 531, 551
ApoI	RAATTY	1 cut(s)	244
AspS9I	GGNCC	3 cut(s)	259, 551, 623
AsuC2I	CCSGG	3 cut(s)	406, 489, 609
AsuHPI	GGTGA	2 cut(s)	89, 154
AsuII	TTCGAA	1 cut(s)	242
AvaII	GGWCC	1 cut(s)	623
BalI	TGGCCA	2 cut(s)	501, 533
BamHI	GGATCC	1 cut(s)	332
BarI	GAAGNNNNNNTAC	2 cut(s)	383, 415
BccI	CCATC	1 cut(s)	182
BcgI	CGANNNNNNTGC	2 cut(s)	6, 40
BciT130I	CCWGG	1 cut(s)	511
BclI	TGATCA	1 cut(s)	460
BcnI	CCSGG	3 cut(s)	406, 489, 609
BfaI	CTAG	1 cut(s)	685
BfmI	CTRYAG	1 cut(s)	178
BglII	AGATCT	2 cut(s)	19, 307
BisI	GCNGC	3 cut(s)	274, 573, 619
BlsI	GCNGC	3 cut(s)	275, 574, 620
Bme1390I	CCNGG	4 cut(s)	406, 489, 511, 609
Bme18I	GGWCC	1 cut(s)	623
BmgT120I	GGNCC	3 cut(s)	259, 551, 623
BmiI	GGNNCC	2 cut(s)	172, 334
BmrFI	CCNGG	4 cut(s)	406, 489, 511, 609
BmsI	GCATC	2 cut(s)	122, 214
Bpu14I	TTCGAA	1 cut(s)	242
BpuEI	CTTGAG	3 cut(s)	140, 239, 437
BpuMI	CCSGG	3 cut(s)	406, 489, 609
BsaJI	CCNNGG	2 cut(s)	28, 648
BsaXI	ACNNNNNCTCC	4 cut(s)	386, 416, 644, 674
Bsc4I	CCNNNNNNNGG	2 cut(s)	144, 475
Bse118I	RCCGGY	1 cut(s)	639
Bse1I	ACTGG	2 cut(s)	420, 554
BseBI	CCWGG	1 cut(s)	511
BseDI	CCNNGG	2 cut(s)	28, 648
BseGI	GGATG	2 cut(s)	205, 644
BseLI	CCNNNNNNNGG	2 cut(s)	144, 475
BseNI	ACTGG	2 cut(s)	420, 554
BseYI	CCCAGC	1 cut(s)	415
BsgI	GTGCAG	1 cut(s)	418
Bsh1236I	CGCG	1 cut(s)	273
BshFI	GGCC	5 cut(s)	261, 384, 501, 533, 553
BsiSI	CCGG	4 cut(s)	405, 489, 609, 640
BslFI	GGGAC	3 cut(s)	264, 421, 542
BslI	CCNNNNNNNGG	2 cut(s)	144, 475
BsmFI	GGGAC	3 cut(s)	264, 421, 542
BsnI	GGCC	5 cut(s)	261, 384, 501, 533, 553
Bsp119I	TTCGAA	1 cut(s)	242
Bsp1407I	TGTACA	1 cut(s)	287
Bsp143I	GATC	4 cut(s)	19, 307, 332, 460
BspACI	CCGC	8 cut(s)	75, 273, 330, 342, 572, 587, 618, 621
BspANI	GGCC	5 cut(s)	261, 384, 501, 533, 553
BspFNI	CGCG	1 cut(s)	273
BspLI	GGNNCC	2 cut(s)	172, 334
BspPI	GGATC	2 cut(s)	327, 340
BspT104I	TTCGAA	1 cut(s)	242
BsrBI	CCGCTC	1 cut(s)	330
BsrFI	RCCGGY	1 cut(s)	639
BsrGI	TGTACA	1 cut(s)	287
BsrI	ACTGG	2 cut(s)	420, 554
BssAI	RCCGGY	1 cut(s)	639
BssECI	CCNNGG	2 cut(s)	28, 648
BssMI	GATC	4 cut(s)	19, 307, 332, 460
BssT1I	CCWWGG	1 cut(s)	28
Bst2UI	CCWGG	1 cut(s)	511
Bst4CI	ACNGT	1 cut(s)	593
Bst6I	CTCTTC	2 cut(s)	145, 626
BstAUI	TGTACA	1 cut(s)	287
BstBI	TTCGAA	1 cut(s)	242
BstDEI	CTNAG	2 cut(s)	53, 304
BstDSI	CCRYGG	1 cut(s)	648
BstF5I	GGATG	2 cut(s)	205, 644
BstFNI	CGCG	1 cut(s)	273
BstKTI	GATC	4 cut(s)	22, 310, 335, 463
BstMBI	GATC	4 cut(s)	19, 307, 332, 460
BstMWI	GCNNNNNNNGC	1 cut(s)	300
BstNI	CCWGG	1 cut(s)	511
BstSCI	CCNGG	4 cut(s)	404, 487, 509, 607
BstSFI	CTRYAG	1 cut(s)	178
BstUI	CGCG	1 cut(s)	273
BstX2I	RGATCY	3 cut(s)	19, 307, 332
BstYI	RGATCY	3 cut(s)	19, 307, 332
BsuRI	GGCC	5 cut(s)	261, 384, 501, 533, 553
BtgI	CCRYGG	1 cut(s)	648
BtsCI	GGATG	2 cut(s)	205, 644
BtsIMutI	CAGTG	1 cut(s)	532
Cfr10I	RCCGGY	1 cut(s)	639
Cfr13I	GGNCC	3 cut(s)	259, 551, 623
Csp6I	GTAC	2 cut(s)	288, 372
CviAII	CATG	2 cut(s)	144, 548
CviQI	GTAC	2 cut(s)	288, 372
DdeI	CTNAG	2 cut(s)	53, 304
DpnI	GATC	4 cut(s)	21, 309, 334, 462
DpnII	GATC	4 cut(s)	19, 307, 332, 460
EaeI	YGGCCR	2 cut(s)	499, 531
Eam1104I	CTCTTC	2 cut(s)	145, 626
EarI	CTCTTC	2 cut(s)	145, 626
Eco130I	CCWWGG	1 cut(s)	28
Eco32I	GATATC	2 cut(s)	88, 349
Eco47I	GGWCC	1 cut(s)	623
Eco57I	CTGAAG	1 cut(s)	650
EcoRII	CCWGG	1 cut(s)	509
EcoRV	GATATC	2 cut(s)	88, 349
EcoT14I	CCWWGG	1 cut(s)	28
ErhI	CCWWGG	1 cut(s)	28
FaeI	CATG	2 cut(s)	147, 551
FaiI	YATR	6 cut(s)	107, 131, 145, 278, 393, 549
FalI	AAGNNNNNCTT	2 cut(s)	102, 134
FaqI	GGGAC	3 cut(s)	264, 421, 542
FatI	CATG	2 cut(s)	143, 547
FauI	CCCGC	1 cut(s)	349
FbaI	TGATCA	1 cut(s)	460
Fnu4HI	GCNGC	3 cut(s)	274, 573, 619
FokI	GGATG	2 cut(s)	192, 631
Fsp4HI	GCNGC	3 cut(s)	274, 573, 619
FspBI	CTAG	1 cut(s)	685
GluI	GCNGC	3 cut(s)	274, 573, 619
GsaI	CCCAGC	1 cut(s)	419
HaeIII	GGCC	5 cut(s)	261, 384, 501, 533, 553
HapII	CCGG	4 cut(s)	405, 489, 609, 640
Hin1II	CATG	2 cut(s)	147, 551
HincII	GTYRAC	1 cut(s)	135
HindII	GTYRAC	1 cut(s)	135
HindIII	AAGCTT	2 cut(s)	292, 455
HinfI	GANTC	5 cut(s)	63, 252, 357, 484, 612
HpaI	GTTAAC	1 cut(s)	135
HpaII	CCGG	4 cut(s)	405, 489, 609, 640
HphI	GGTGA	2 cut(s)	89, 154
Hpy166II	GTNNAC	3 cut(s)	14, 135, 677
Hpy188I	TCNGA	3 cut(s)	444, 483, 630
Hpy8I	GTNNAC	3 cut(s)	14, 135, 677
HpyAV	CCTTC	1 cut(s)	161
HpyCH4III	ACNGT	1 cut(s)	593
HpyCH4IV	ACGT	1 cut(s)	374
HpyCH4V	TGCA	2 cut(s)	435, 547
HpyF10VI	GCNNNNNNNGC	1 cut(s)	300
HpyF3I	CTNAG	2 cut(s)	53, 304
HpySE526I	ACGT	1 cut(s)	374
Hsp92II	CATG	2 cut(s)	147, 551
Ksp22I	TGATCA	1 cut(s)	460
KspAI	GTTAAC	1 cut(s)	135
Kzo9I	GATC	4 cut(s)	19, 307, 332, 460
LweI	GCATC	2 cut(s)	122, 214
MaeI	CTAG	1 cut(s)	685
MaeII	ACGT	1 cut(s)	374
MaeIII	GTNAC	2 cut(s)	580, 593
MalI	GATC	4 cut(s)	21, 309, 334, 462
MbiI	CCGCTC	1 cut(s)	330
MboI	GATC	4 cut(s)	19, 307, 332, 460
MboII	GAAGA	3 cut(s)	132, 533, 643
MflI	RGATCY	3 cut(s)	19, 307, 332
MlsI	TGGCCA	2 cut(s)	501, 533
MluCI	AATT	5 cut(s)	244, 263, 283, 495, 664
MluNI	TGGCCA	2 cut(s)	501, 533
MlyI	GAGTC	2 cut(s)	246, 606
MmeI	TCCRAC	2 cut(s)	105, 453
MnlI	CCTC	5 cut(s)	148, 279, 395, 461, 636
Mox20I	TGGCCA	2 cut(s)	501, 533
MscI	TGGCCA	2 cut(s)	501, 533
MseI	TTAA	4 cut(s)	134, 296, 516, 662
MslI	CAYNNNNRTG	1 cut(s)	210
Msp20I	TGGCCA	2 cut(s)	501, 533
MspA1I	CMGCKG	2 cut(s)	344, 587
MspI	CCGG	4 cut(s)	405, 489, 609, 640
MspR9I	CCNGG	4 cut(s)	406, 489, 511, 609
MvaI	CCWGG	1 cut(s)	511
MvnI	CGCG	1 cut(s)	273
MwoI	GCNNNNNNNGC	1 cut(s)	300
NciI	CCSGG	3 cut(s)	406, 489, 609
NdeII	GATC	4 cut(s)	19, 307, 332, 460
NlaIII	CATG	2 cut(s)	147, 551
NlaIV	GGNNCC	2 cut(s)	172, 334
NspV	TTCGAA	1 cut(s)	242
PfeI	GAWTC	3 cut(s)	63, 357, 484
PfoI	TCCNGGA	3 cut(s)	404, 487, 607
PkrI	GCNGC	3 cut(s)	275, 574, 620
PleI	GAGTC	2 cut(s)	246, 606
PpsI	GAGTC	2 cut(s)	246, 606
Psp6I	CCWGG	1 cut(s)	509
PspFI	CCCAGC	1 cut(s)	415
PspGI	CCWGG	1 cut(s)	509
PspN4I	GGNNCC	2 cut(s)	172, 334
PspPI	GGNCC	3 cut(s)	259, 551, 623
PsuI	RGATCY	3 cut(s)	19, 307, 332
RsaI	GTAC	2 cut(s)	289, 373
RsaNI	GTAC	2 cut(s)	288, 372
RseI	CAYNNNNRTG	1 cut(s)	210
SaqAI	TTAA	4 cut(s)	134, 296, 516, 662
SatI	GCNGC	3 cut(s)	274, 573, 619
Sau3AI	GATC	4 cut(s)	19, 307, 332, 460
Sau96I	GGNCC	3 cut(s)	259, 551, 623
SchI	GAGTC	2 cut(s)	246, 606
ScrFI	CCNGG	4 cut(s)	406, 489, 511, 609
SetI	ASST	7 cut(s)	140, 172, 240, 296, 377, 459, 474
SfaNI	GCATC	2 cut(s)	122, 214
SfcI	CTRYAG	1 cut(s)	178
SfuI	TTCGAA	1 cut(s)	242
SinI	GGWCC	1 cut(s)	623
SmiMI	CAYNNNNRTG	1 cut(s)	210
SmlI	CTYRAG	3 cut(s)	119, 254, 452
SmoI	CTYRAG	3 cut(s)	119, 254, 452
Sse9I	AATT	5 cut(s)	244, 263, 283, 495, 664
SsiI	CCGC	8 cut(s)	75, 273, 330, 342, 572, 587, 618, 621
SspMI	CTAG	1 cut(s)	685
StyD4I	CCNGG	4 cut(s)	404, 487, 509, 607
StyI	CCWWGG	1 cut(s)	28
TaaI	ACNGT	1 cut(s)	593
TaiI	ACGT	1 cut(s)	377
TaqI	TCGA	2 cut(s)	242, 314
TasI	AATT	5 cut(s)	244, 263, 283, 495, 664
TatI	WGTACW	1 cut(s)	287
TauI	GCSGC	3 cut(s)	276, 575, 621
TfiI	GAWTC	3 cut(s)	63, 357, 484
Tru1I	TTAA	4 cut(s)	134, 296, 516, 662
Tru9I	TTAA	4 cut(s)	134, 296, 516, 662
TscAI	CASTG	1 cut(s)	532
TspDTI	ATGAA	1 cut(s)	132
TspGWI	ACGGA	1 cut(s)	637
TspRI	CASTG	1 cut(s)	532
VpaK11BI	GGWCC	1 cut(s)	623
XapI	RAATTY	1 cut(s)	244
XspI	CTAG	1 cut(s)	685

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.