Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003453

Physical Location & Seq

Genomic Coordinates Reverse (-)

18388619 .. 18389992

Gene Structure 1374 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G186400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGTCCAGTGGTTATAAAAAGCCAGGGAATTTCAGTGTCCTCTGGTTGCTGCTTAGTTGTGGTTTCAGCTTTGGTGTTGAGAGTGATATCAACTGCTTGAAAAGTATAAAAGCATCACTTGAGGACACTTTGGGGTACTTAAACTCTTGGGATTTCAACAACAACACTGAAGGCTTCATCTGCAACTTTCTTGGGGTCGAGTGTTGGCACCCTCACGAGAGTAGAGTTTTAAACATCAAGCTTTCGGATTTGGGACTGAAGGGCTCGTTTCCTCAAGGCGTAGCAAATTGCACAAGCCTAACAGGGTTAGATCTTTCAAGCAACCAGCTCAATGGACCTCTTCCTACTGATATCGATAAAATCATTACGTTCATTACGTCCCTTGATCTCTCATCTAACAGCTTCACAGGGCAAATCCCAATGAAGCTTTCCAATTGCAGCTATCTGAATGTGCTTAAGCTTGACAACAACAAGTTCTCGGGTATCATTCCTCCAGAGCTTGGCCAGCTTACTAGGATTAAAACATTTAGTGTGGCCAACAATCAGCTGTCTGGCCCAGTCCCAAACTTTAATAATACATCAATTGGACCTGAAAGCTATGCAAACAACACCGGACTCTGTGGAGGCCCTTTGAAGCATTGCCCGCCGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

218

Amino Acids

23.46

Weight (kDa)

5.87

Isoelectric Point (pI)

30.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003453)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04660 FvH4_2g17431
malus_domestica	MD05G1153200.v1.1 MD10G1147500.v1.1
prunus_persica	Prupe.8G186300_v2.0.a1 Prupe.8G186400_v2.0.a1 Prupe.8G186500_v2.0.a1 Prupe.8G186600_v2.0.a1
pyrus_communis	pycom05g14760 pycom10g12710 pycom10g12740
rosa_chinensis	RchiOBHm_Chr6g0281591 RchiOBHm_Chr6g0281611 RchiOBHm_Chr6g0282141
rosa_laevigata	RLG00000012906 RLG00000012907 RLG00000012959
rosa_multiflora	Rmu_sc0006897.1_g000004
rosa_roxburghii	Rroxscaffold_7G00186470
rosa_rugosa	Rorug06G0142000 Rorug06G0145600 Rorug06G0170000
rosa_samantha	Rh6AG047800 Rh6AG254400 Rh6AG258700 Rh6BG044300 Rh6BG257600 Rh6BG262000 Rh6BG262200 Rh6CG256700 Rh6CG261000 Rh6DG248500 Rh6DG248600 Rh6DG253000
rosa_wichuraiana	Rw6G022090 Rw6G022390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	15
AccB1I	GGYRCC	1 cut(s)	207
AccB7I	CCANNNNNTGG	1 cut(s)	500
AciI	CCGC	1 cut(s)	644
AcoI	YGGCCR	2 cut(s)	502, 534
AcsI	RAATTY	1 cut(s)	28
AcuI	CTGAAG	2 cut(s)	189, 278
AfaI	GTAC	1 cut(s)	137
AfiI	CCNNNNNNNGG	1 cut(s)	500
AflII	CTTAAG	1 cut(s)	455
AgsI	TTSAA	4 cut(s)	100, 157, 318, 634
AjnI	CCWGG	1 cut(s)	22
AjuI	GAANNNNNNNTTGG	2 cut(s)	412, 444
Ama87I	CYCGRG	1 cut(s)	478
AoxI	GGCC	4 cut(s)	502, 534, 553, 625
ApeKI	GCWGC	2 cut(s)	49, 438
ApoI	RAATTY	1 cut(s)	28
AspS9I	GGNCC	4 cut(s)	335, 554, 587, 626
AvaI	CYCGRG	1 cut(s)	478
AvaII	GGWCC	2 cut(s)	335, 587
BalI	TGGCCA	2 cut(s)	504, 536
BanI	GGYRCC	1 cut(s)	207
BanII	GRGCYC	1 cut(s)	266
BauI	CACGAG	1 cut(s)	215
BbvI	GCAGC	2 cut(s)	36, 450
BciT130I	CCWGG	1 cut(s)	24
BfaI	CTAG	1 cut(s)	513
BfrI	CTTAAG	1 cut(s)	455
BglII	AGATCT	1 cut(s)	310
BisI	GCNGC	2 cut(s)	50, 439
BlsI	GCNGC	2 cut(s)	51, 440
Bme1390I	CCNGG	1 cut(s)	24
Bme18I	GGWCC	2 cut(s)	335, 587
BmeT110I	CYCGRG	1 cut(s)	478
BmgT120I	GGNCC	4 cut(s)	335, 554, 587, 626
BmiI	GGNNCC	1 cut(s)	209
BmrFI	CCNGG	1 cut(s)	24
BmrI	ACTGGG	1 cut(s)	551
BmsI	GCATC	1 cut(s)	122
BmuI	ACTGGG	1 cut(s)	551
BpmI	CTGGAG	1 cut(s)	477
BpuEI	CTTGAG	2 cut(s)	140, 258
Bsa29I	ATCGAT	1 cut(s)	354
BsaJI	CCNNGG	1 cut(s)	23
BsaWI	WCCGGW	1 cut(s)	611
Bsc4I	CCNNNNNNNGG	1 cut(s)	500
Bse118I	RCCGGY	1 cut(s)	646
Bse1I	ACTGG	2 cut(s)	6, 557
Bse3DI	GCAATG	1 cut(s)	637
BseBI	CCWGG	1 cut(s)	24
BseCI	ATCGAT	1 cut(s)	354
BseDI	CCNNGG	1 cut(s)	23
BseLI	CCNNNNNNNGG	1 cut(s)	500
BseMI	GCAATG	1 cut(s)	637
BseNI	ACTGG	2 cut(s)	6, 557
BseXI	GCAGC	2 cut(s)	36, 450
BshFI	GGCC	4 cut(s)	504, 536, 555, 627
BshNI	GGYRCC	1 cut(s)	207
BshVI	ATCGAT	1 cut(s)	354
BsiHKCI	CYCGRG	1 cut(s)	478
BsiSI	CCGG	2 cut(s)	612, 647
BslFI	GGGAC	3 cut(s)	267, 364, 545
BslI	CCNNNNNNNGG	1 cut(s)	500
BsmFI	GGGAC	3 cut(s)	267, 364, 545
BsnI	GGCC	4 cut(s)	504, 536, 555, 627
BsoBI	CYCGRG	1 cut(s)	478
Bsp1286I	GDGCHC	1 cut(s)	266
Bsp143I	GATC	2 cut(s)	310, 385
BspACI	CCGC	1 cut(s)	644
BspANI	GGCC	4 cut(s)	504, 536, 555, 627
BspDI	ATCGAT	1 cut(s)	354
BspLI	GGNNCC	1 cut(s)	209
BspT107I	GGYRCC	1 cut(s)	207
BspTI	CTTAAG	1 cut(s)	455
BsrDI	GCAATG	1 cut(s)	637
BsrFI	RCCGGY	1 cut(s)	646
BsrI	ACTGG	2 cut(s)	6, 557
BssAI	RCCGGY	1 cut(s)	646
BssECI	CCNNGG	1 cut(s)	23
BssMI	GATC	2 cut(s)	310, 385
BssSI	CACGAG	1 cut(s)	215
Bst2BI	CACGAG	1 cut(s)	215
Bst2UI	CCWGG	1 cut(s)	24
Bst6I	CTCTTC	1 cut(s)	345
BstAFI	CTTAAG	1 cut(s)	455
BstC8I	GCNNGC	2 cut(s)	506, 644
BstDEI	CTNAG	1 cut(s)	53
BstKTI	GATC	2 cut(s)	313, 388
BstMBI	GATC	2 cut(s)	310, 385
BstMWI	GCNNNNNNNGC	3 cut(s)	180, 505, 643
BstNI	CCWGG	1 cut(s)	24
BstSCI	CCNGG	1 cut(s)	22
BstV1I	GCAGC	2 cut(s)	36, 450
BstX2I	RGATCY	1 cut(s)	310
BstXI	CCANNNNNNTGG	1 cut(s)	332
BstYI	RGATCY	1 cut(s)	310
Bsu15I	ATCGAT	1 cut(s)	354
BsuRI	GGCC	4 cut(s)	504, 536, 555, 627
BsuTUI	ATCGAT	1 cut(s)	354
BtsIMutI	CAGTG	3 cut(s)	13, 40, 165
Cac8I	GCNNGC	2 cut(s)	506, 644
Cfr10I	RCCGGY	1 cut(s)	646
Cfr13I	GGNCC	4 cut(s)	335, 554, 587, 626
ClaI	ATCGAT	1 cut(s)	354
Csp6I	GTAC	1 cut(s)	136
CviQI	GTAC	1 cut(s)	136
DdeI	CTNAG	1 cut(s)	53
DpnI	GATC	2 cut(s)	312, 387
DpnII	GATC	2 cut(s)	310, 385
DraI	TTTAAA	1 cut(s)	231
EaeI	YGGCCR	2 cut(s)	502, 534
Eam1104I	CTCTTC	1 cut(s)	345
EarI	CTCTTC	1 cut(s)	345
Eco24I	GRGCYC	1 cut(s)	266
Eco32I	GATATC	2 cut(s)	88, 352
Eco47I	GGWCC	2 cut(s)	335, 587
Eco57I	CTGAAG	2 cut(s)	189, 278
Eco88I	CYCGRG	1 cut(s)	478
EcoO109I	RGGNCCY	1 cut(s)	626
EcoRII	CCWGG	1 cut(s)	22
EcoRV	GATATC	2 cut(s)	88, 352
EcoT38I	GRGCYC	1 cut(s)	266
FaiI	YATR	3 cut(s)	15, 107, 600
FalI	AAGNNNNNCTT	2 cut(s)	102, 134
FaqI	GGGAC	3 cut(s)	267, 364, 545
FauI	CCCGC	1 cut(s)	651
Fnu4HI	GCNGC	2 cut(s)	50, 439
FriOI	GRGCYC	1 cut(s)	266
Fsp4HI	GCNGC	2 cut(s)	50, 439
FspBI	CTAG	1 cut(s)	513
GluI	GCNGC	2 cut(s)	50, 439
GsuI	CTGGAG	1 cut(s)	477
HaeIII	GGCC	4 cut(s)	504, 536, 555, 627
HapII	CCGG	2 cut(s)	612, 647
HindIII	AAGCTT	3 cut(s)	239, 425, 458
HinfI	GANTC	1 cut(s)	615
HpaII	CCGG	2 cut(s)	612, 647
Hpy188I	TCNGA	2 cut(s)	247, 447
Hpy188III	TCNNGA	2 cut(s)	215, 494
HpyAV	CCTTC	2 cut(s)	164, 253
HpyCH4IV	ACGT	2 cut(s)	368, 377
HpyCH4V	TGCA	4 cut(s)	183, 291, 438, 602
HpyF10VI	GCNNNNNNNGC	3 cut(s)	180, 505, 643
HpyF3I	CTNAG	1 cut(s)	53
HpySE526I	ACGT	2 cut(s)	368, 377
Kzo9I	GATC	2 cut(s)	310, 385
Lsp1109I	GCAGC	2 cut(s)	36, 450
LweI	GCATC	1 cut(s)	122
MaeI	CTAG	1 cut(s)	513
MaeII	ACGT	2 cut(s)	368, 377
MalI	GATC	2 cut(s)	312, 387
MboI	GATC	2 cut(s)	310, 385
MboII	GAAGA	1 cut(s)	332
MfeI	CAATTG	2 cut(s)	433, 582
MflI	RGATCY	1 cut(s)	310
MhlI	GDGCHC	1 cut(s)	266
MlsI	TGGCCA	2 cut(s)	504, 536
MluCI	AATT	4 cut(s)	28, 286, 433, 582
MluNI	TGGCCA	2 cut(s)	504, 536
MlyI	GAGTC	1 cut(s)	609
MnlI	CCTC	7 cut(s)	50, 115, 222, 282, 348, 501, 617
Mox20I	TGGCCA	2 cut(s)	504, 536
MscI	TGGCCA	2 cut(s)	504, 536
MseI	TTAA	6 cut(s)	140, 230, 456, 519, 570, 652
Msp20I	TGGCCA	2 cut(s)	504, 536
MspA1I	CMGCKG	1 cut(s)	547
MspCI	CTTAAG	1 cut(s)	455
MspI	CCGG	2 cut(s)	612, 647
MspR9I	CCNGG	1 cut(s)	24
MunI	CAATTG	2 cut(s)	433, 582
MvaI	CCWGG	1 cut(s)	24
MwoI	GCNNNNNNNGC	3 cut(s)	180, 505, 643
NdeII	GATC	2 cut(s)	310, 385
NlaIV	GGNNCC	1 cut(s)	209
PcsI	WCGNNNNNNNCGW	1 cut(s)	374
PflMI	CCANNNNNTGG	1 cut(s)	500
PkrI	GCNGC	2 cut(s)	51, 440
PleI	GAGTC	1 cut(s)	609
PpsI	GAGTC	1 cut(s)	609
PsiI	TTATAA	1 cut(s)	15
Psp6I	CCWGG	1 cut(s)	22
PspGI	CCWGG	1 cut(s)	22
PspN4I	GGNNCC	1 cut(s)	209
PspPI	GGNCC	4 cut(s)	335, 554, 587, 626
PsuI	RGATCY	1 cut(s)	310
PvuII	CAGCTG	1 cut(s)	547
RsaI	GTAC	1 cut(s)	137
RsaNI	GTAC	1 cut(s)	136
SaqAI	TTAA	6 cut(s)	140, 230, 456, 519, 570, 652
SatI	GCNGC	2 cut(s)	50, 439
Sau3AI	GATC	2 cut(s)	310, 385
Sau96I	GGNCC	4 cut(s)	335, 554, 587, 626
SchI	GAGTC	1 cut(s)	609
ScrFI	CCNGG	1 cut(s)	24
SduI	GDGCHC	1 cut(s)	266
SfaNI	GCATC	1 cut(s)	122
SinI	GGWCC	2 cut(s)	335, 587
SmlI	CTYRAG	3 cut(s)	119, 273, 455
SmoI	CTYRAG	3 cut(s)	119, 273, 455
Sse9I	AATT	4 cut(s)	28, 286, 433, 582
SsiI	CCGC	1 cut(s)	644
SspMI	CTAG	1 cut(s)	513
StyD4I	CCNGG	1 cut(s)	22
TaiI	ACGT	2 cut(s)	371, 380
TaqI	TCGA	2 cut(s)	198, 354
TasI	AATT	4 cut(s)	28, 286, 433, 582
Tru1I	TTAA	6 cut(s)	140, 230, 456, 519, 570, 652
Tru9I	TTAA	6 cut(s)	140, 230, 456, 519, 570, 652
TscAI	CASTG	3 cut(s)	13, 40, 172
TseI	GCWGC	2 cut(s)	49, 438
TspDTI	ATGAA	3 cut(s)	166, 361, 437
TspRI	CASTG	3 cut(s)	13, 40, 172
Van91I	CCANNNNNTGG	1 cut(s)	500
Vha464I	CTTAAG	1 cut(s)	455
VpaK11BI	GGWCC	2 cut(s)	335, 587
XapI	RAATTY	1 cut(s)	28
XspI	CTAG	1 cut(s)	513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.