Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003453

Physical Location & Seq

Genomic Coordinates Reverse (-)

25096921 .. 25097295

Gene Structure 375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0170000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGTGCAATCAAATGTCGTCTCAACACCAACAAAGAAGACTTCAAAGTCGCATAAAGTAAGAAAGTCGAAGTCTTCAAAGACCAAGGATAAGGCCTCTGTTTCAAATTCTGCTGCAAGTGTTAGTAAAAGGAAGAAAAAAGGGAAGAGAAATACACAAGATGAGGTAGATGATGGTTGTACTGGAGGCTTTAAGCTGCTCAAGCGTCACCGCATGACAATGGCCAAGATGACAACGGGTAGGATTCTGAAAAAGAGACTTATAGTTGAGTTTGATAAGAATGAGGATCCAATAGGGAAAAATGCAGATGCGTTACAGTCCTACATTGGTGTTTTGGCAAGAACCAATATCTCAATTTCAATAGTATCTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010941 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0031348 GO:0033612 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0060548 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

124

Amino Acids

13.64

Weight (kDa)

10.41

Isoelectric Point (pI)

40.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003453)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04660 FvH4_2g17431
malus_domestica	MD05G1153200.v1.1 MD10G1147500.v1.1
prunus_persica	Prupe.8G186300_v2.0.a1 Prupe.8G186400_v2.0.a1 Prupe.8G186500_v2.0.a1 Prupe.8G186600_v2.0.a1
pyrus_communis	pycom05g14760 pycom10g12710 pycom10g12740
rosa_chinensis	RchiOBHm_Chr6g0281591 RchiOBHm_Chr6g0281611 RchiOBHm_Chr6g0282141
rosa_laevigata	RLG00000012906 RLG00000012907 RLG00000012959
rosa_multiflora	Rmu_sc0006897.1_g000004
rosa_roxburghii	Rroxscaffold_7G00186470
rosa_rugosa	Rorug06G0142000 Rorug06G0145600 Rorug06G0170000
rosa_samantha	Rh6AG047800 Rh6AG254400 Rh6AG258700 Rh6BG044300 Rh6BG257600 Rh6BG262000 Rh6BG262200 Rh6CG256700 Rh6CG261000 Rh6DG248500 Rh6DG248600 Rh6DG253000
rosa_wichuraiana	Rw6G022090 Rw6G022390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	46
AciI	CCGC	1 cut(s)	211
AclWI	GGATC	2 cut(s)	281, 294
AcoI	YGGCCR	1 cut(s)	222
AcsI	RAATTY	1 cut(s)	106
AfaI	GTAC	1 cut(s)	181
AgsI	TTSAA	4 cut(s)	45, 78, 105, 360
AluBI	AGCT	1 cut(s)	196
AluI	AGCT	1 cut(s)	196
Alw26I	GTCTC	2 cut(s)	25, 250
AlwI	GGATC	2 cut(s)	281, 294
AoxI	GGCC	2 cut(s)	93, 222
ApeKI	GCWGC	2 cut(s)	113, 196
ApoI	RAATTY	1 cut(s)	106
AsuHPI	GGTGA	1 cut(s)	200
BalI	TGGCCA	1 cut(s)	224
BamHI	GGATCC	1 cut(s)	286
BbsI	GAAGAC	2 cut(s)	44, 66
BbvI	GCAGC	2 cut(s)	100, 183
BccI	CCATC	1 cut(s)	167
BcoDI	GTCTC	2 cut(s)	25, 250
BisI	GCNGC	2 cut(s)	114, 197
BlsI	GCNGC	2 cut(s)	115, 198
BmiI	GGNNCC	1 cut(s)	288
BmsI	GCATC	1 cut(s)	298
BpiI	GAAGAC	2 cut(s)	44, 66
BpmI	CTGGAG	1 cut(s)	204
BpuEI	CTTGAG	1 cut(s)	185
BsaJI	CCNNGG	1 cut(s)	84
Bse1I	ACTGG	1 cut(s)	187
BseDI	CCNNGG	1 cut(s)	84
BseNI	ACTGG	1 cut(s)	187
BseXI	GCAGC	2 cut(s)	100, 183
BshFI	GGCC	2 cut(s)	95, 224
BsmAI	GTCTC	2 cut(s)	25, 250
BsmBI	CGTCTC	1 cut(s)	25
BsnI	GGCC	2 cut(s)	95, 224
Bsp143I	GATC	1 cut(s)	286
BspACI	CCGC	1 cut(s)	211
BspANI	GGCC	2 cut(s)	95, 224
BspLI	GGNNCC	1 cut(s)	288
BspPI	GGATC	2 cut(s)	281, 294
BsrI	ACTGG	1 cut(s)	187
BssECI	CCNNGG	1 cut(s)	84
BssMI	GATC	1 cut(s)	286
BssT1I	CCWWGG	1 cut(s)	84
Bst4CI	ACNGT	1 cut(s)	318
Bst6I	CTCTTC	1 cut(s)	140
BstKTI	GATC	1 cut(s)	289
BstMAI	GTCTC	2 cut(s)	25, 250
BstMBI	GATC	1 cut(s)	286
BstMWI	GCNNNNNNNGC	1 cut(s)	202
BstV1I	GCAGC	2 cut(s)	100, 183
BstV2I	GAAGAC	2 cut(s)	44, 66
BstX2I	RGATCY	1 cut(s)	286
BstYI	RGATCY	1 cut(s)	286
BsuRI	GGCC	2 cut(s)	95, 224
CseI	GACGC	1 cut(s)	194
Csp6I	GTAC	1 cut(s)	180
CviAII	CATG	1 cut(s)	214
CviJI	RGCY	4 cut(s)	95, 189, 196, 224
CviKI_1	RGCY	4 cut(s)	95, 189, 196, 224
CviQI	GTAC	1 cut(s)	180
DpnI	GATC	1 cut(s)	288
DpnII	GATC	1 cut(s)	286
DrdI	GACNNNNNNGTC	1 cut(s)	46
DseDI	GACNNNNNNGTC	1 cut(s)	46
EaeI	YGGCCR	1 cut(s)	222
Eam1104I	CTCTTC	1 cut(s)	140
EarI	CTCTTC	1 cut(s)	140
Eco130I	CCWWGG	1 cut(s)	84
Eco147I	AGGCCT	1 cut(s)	95
EcoT14I	CCWWGG	1 cut(s)	84
ErhI	CCWWGG	1 cut(s)	84
Esp3I	CGTCTC	1 cut(s)	25
FaeI	CATG	1 cut(s)	217
FaiI	YATR	3 cut(s)	54, 215, 263
FatI	CATG	1 cut(s)	213
Fnu4HI	GCNGC	2 cut(s)	114, 197
Fsp4HI	GCNGC	2 cut(s)	114, 197
GluI	GCNGC	2 cut(s)	114, 197
GsuI	CTGGAG	1 cut(s)	204
HaeIII	GGCC	2 cut(s)	95, 224
HgaI	GACGC	1 cut(s)	194
Hin1II	CATG	1 cut(s)	217
HinfI	GANTC	1 cut(s)	244
HphI	GGTGA	1 cut(s)	200
Hpy188I	TCNGA	1 cut(s)	249
HpyCH4III	ACNGT	1 cut(s)	318
HpyCH4V	TGCA	3 cut(s)	7, 116, 305
HpyF10VI	GCNNNNNNNGC	1 cut(s)	202
Hsp92II	CATG	1 cut(s)	217
Kzo9I	GATC	1 cut(s)	286
LpnPI	CCDG	1 cut(s)	168
Lsp1109I	GCAGC	2 cut(s)	100, 183
LweI	GCATC	1 cut(s)	298
MaeIII	GTNAC	2 cut(s)	206, 312
MalI	GATC	1 cut(s)	288
MboI	GATC	1 cut(s)	286
MboII	GAAGA	4 cut(s)	49, 66, 145, 157
MflI	RGATCY	1 cut(s)	286
MlsI	TGGCCA	1 cut(s)	224
MluCI	AATT	2 cut(s)	106, 354
MluNI	TGGCCA	1 cut(s)	224
MnlI	CCTC	4 cut(s)	106, 157, 179, 277
Mox20I	TGGCCA	1 cut(s)	224
MscI	TGGCCA	1 cut(s)	224
MseI	TTAA	2 cut(s)	192, 373
MslI	CAYNNNNRTG	1 cut(s)	218
Msp20I	TGGCCA	1 cut(s)	224
MwoI	GCNNNNNNNGC	1 cut(s)	202
NdeII	GATC	1 cut(s)	286
NlaIII	CATG	1 cut(s)	217
NlaIV	GGNNCC	1 cut(s)	288
NmuCI	GTSAC	1 cut(s)	206
PceI	AGGCCT	1 cut(s)	95
PfeI	GAWTC	1 cut(s)	244
PkrI	GCNGC	2 cut(s)	115, 198
PspN4I	GGNNCC	1 cut(s)	288
PsuI	RGATCY	1 cut(s)	286
RsaI	GTAC	1 cut(s)	181
RsaNI	GTAC	1 cut(s)	180
RseI	CAYNNNNRTG	1 cut(s)	218
SaqAI	TTAA	2 cut(s)	192, 373
SatI	GCNGC	2 cut(s)	114, 197
Sau3AI	GATC	1 cut(s)	286
SetI	ASST	2 cut(s)	168, 198
SfaNI	GCATC	1 cut(s)	298
SgeI	CNNG	9 cut(s)	97, 129, 170, 195, 214, 226, 238, 249, 351
SmiMI	CAYNNNNRTG	1 cut(s)	218
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
Sse9I	AATT	2 cut(s)	106, 354
SseBI	AGGCCT	1 cut(s)	95
SsiI	CCGC	1 cut(s)	211
StuI	AGGCCT	1 cut(s)	95
StyI	CCWWGG	1 cut(s)	84
TaaI	ACNGT	1 cut(s)	318
TaqI	TCGA	1 cut(s)	68
TasI	AATT	2 cut(s)	106, 354
TatI	WGTACW	1 cut(s)	179
TfiI	GAWTC	1 cut(s)	244
Tru1I	TTAA	2 cut(s)	192, 373
Tru9I	TTAA	2 cut(s)	192, 373
TseFI	GTSAC	1 cut(s)	206
TseI	GCWGC	2 cut(s)	113, 196
Tsp45I	GTSAC	1 cut(s)	206
XapI	RAATTY	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.