Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0003453

Physical Location & Seq

Genomic Coordinates Reverse (-)

43650183 .. 43651077

Gene Structure 895 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG248500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGTTGTTGACTGGACGAGATCTTTGCAATGTTTTTCTTGCGGGTGTTTTCTTGTTATTGCCTAGTTGTAGATTCATTTCTGGTGTCGAGAGTGATATCAACTGCTTGAGAAGTATAAAAGCATCACTGGAGGACCCTTTAGACATGTTAACCTCTTCATGGGATTTTAGCAATCCCACGGAAGGTTTCATCTGTAACTTTCAGGGAATCGAGTGTTGGCACCCTTATGAGAGCAGAGTTTTAAATATCAAGCTTGCGGATTTGGGACTCAAAGGCCAGTTTCCTCGCGGCTTAGTGAATTGTACAAGCTTAACAGGCTTAGATCTTTCGAGCAACAGCCTCAGTCGATCAATTCCCGGTGATATTCATAAATTGATCCCTTACGTTATGTCGCTTGATCTCTCATCCAACAGCTTCTCAGGGGAAATTCCGAATACAATCTCCAACTGTACTTTCCTGAATGTCCTTAAGCTTGACAACAACAAGTTGACGGGTCAGATTCCTCCAGAACTTGGTCGGCTCAGTAGGCTTAAAGTATTTAGCGTGGCCAACAATCAACTGTCTGGGCCAGTCCCCACCTTTGCAGCCGGAGCGGACAGCTATGCAAACAATAGGAGACTCTGCGGTGGTCCTTTGAAGAATTGCCCCTCATCATCTCAGAACAAGAATGATTTAGTGAGGGTTTTCAAGTCTTACACTGTAGTCATGTTGGGAGCACTCGGTTTTGTATATATACAACTCAAGAGAAAAGGGGGAGTGGGGGACTCGAACTTGATCTATCTGTCACTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010941 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0031348 GO:0033612 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0060548 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

264

Amino Acids

28.76

Weight (kDa)

8.35

Isoelectric Point (pI)

41.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	30 - 73	3.9e-06	Leucine rich repeat N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003453)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04660 FvH4_2g17431
malus_domestica	MD05G1153200.v1.1 MD10G1147500.v1.1
prunus_persica	Prupe.8G186300_v2.0.a1 Prupe.8G186400_v2.0.a1 Prupe.8G186500_v2.0.a1 Prupe.8G186600_v2.0.a1
pyrus_communis	pycom05g14760 pycom10g12710 pycom10g12740
rosa_chinensis	RchiOBHm_Chr6g0281591 RchiOBHm_Chr6g0281611 RchiOBHm_Chr6g0282141
rosa_laevigata	RLG00000012906 RLG00000012907 RLG00000012959
rosa_multiflora	Rmu_sc0006897.1_g000004
rosa_roxburghii	Rroxscaffold_7G00186470
rosa_rugosa	Rorug06G0142000 Rorug06G0145600 Rorug06G0170000
rosa_samantha	Rh6AG047800 Rh6AG254400 Rh6AG258700 Rh6BG044300 Rh6BG257600 Rh6BG262000 Rh6BG262200 Rh6CG256700 Rh6CG261000 Rh6DG248500 Rh6DG248600 Rh6DG253000
rosa_wichuraiana	Rw6G022090 Rw6G022390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	219
AccB7I	CCANNNNNTGG	1 cut(s)	512
AccBSI	CCGCTC	1 cut(s)	593
AccII	CGCG	1 cut(s)	288
AciI	CCGC	5 cut(s)	41, 257, 288, 593, 624
AclWI	GGATC	1 cut(s)	370
AcoI	YGGCCR	1 cut(s)	546
AcsI	RAATTY	1 cut(s)	426
AfaI	GTAC	2 cut(s)	304, 451
AfiI	CCNNNNNNNGG	3 cut(s)	159, 182, 512
AflII	CTTAAG	1 cut(s)	467
AflIII	ACRYGT	1 cut(s)	144
AgsI	TTSAA	2 cut(s)	637, 688
AjuI	GAANNNNNNNTTGG	4 cut(s)	199, 231, 437, 469
AluBI	AGCT	5 cut(s)	253, 309, 414, 472, 600
AluI	AGCT	5 cut(s)	253, 309, 414, 472, 600
Alw21I	GWGCWC	1 cut(s)	718
Alw26I	GTCTC	1 cut(s)	610
AlwI	GGATC	1 cut(s)	370
AoxI	GGCC	3 cut(s)	274, 546, 566
ApeKI	GCWGC	1 cut(s)	584
ApoI	RAATTY	1 cut(s)	426
ArsI	GACNNNNNNTTYG	1 cut(s)	38
AspS9I	GGNCC	3 cut(s)	133, 566, 629
AsuC2I	CCSGG	1 cut(s)	357
AsuHPI	GGTGA	1 cut(s)	371
AvaII	GGWCC	2 cut(s)	133, 629
BalI	TGGCCA	1 cut(s)	548
BanI	GGYRCC	1 cut(s)	219
Bbv12I	GWGCWC	1 cut(s)	718
BbvI	GCAGC	1 cut(s)	596
BcgI	CGANNNNNNTGC	2 cut(s)	6, 40
BcnI	CCSGG	1 cut(s)	357
BcoDI	GTCTC	1 cut(s)	610
BfaI	CTAG	1 cut(s)	63
BfmI	CTRYAG	1 cut(s)	699
BfrI	CTTAAG	1 cut(s)	467
BglII	AGATCT	2 cut(s)	19, 322
BisI	GCNGC	2 cut(s)	289, 585
BlsI	GCNGC	2 cut(s)	290, 586
Bme1390I	CCNGG	1 cut(s)	357
Bme18I	GGWCC	2 cut(s)	133, 629
BmgT120I	GGNCC	3 cut(s)	133, 566, 629
BmiI	GGNNCC	2 cut(s)	135, 221
BmrFI	CCNGG	1 cut(s)	357
BmsI	GCATC	1 cut(s)	131
BpmI	CTGGAG	2 cut(s)	149, 489
BpuEI	CTTGAG	2 cut(s)	127, 725
BpuMI	CCSGG	1 cut(s)	357
BsaJI	CCNNGG	1 cut(s)	177
Bsc4I	CCNNNNNNNGG	3 cut(s)	159, 182, 512
Bse1I	ACTGG	4 cut(s)	16, 132, 277, 569
Bse3DI	GCAATG	1 cut(s)	34
BseDI	CCNNGG	1 cut(s)	177
BseGI	GGATG	1 cut(s)	404
BseLI	CCNNNNNNNGG	3 cut(s)	159, 182, 512
BseMI	GCAATG	1 cut(s)	34
BseMII	CTCAG	4 cut(s)	355, 432, 535, 671
BseNI	ACTGG	4 cut(s)	16, 132, 277, 569
BseXI	GCAGC	1 cut(s)	596
Bsh1236I	CGCG	1 cut(s)	288
BshFI	GGCC	3 cut(s)	276, 548, 568
BshNI	GGYRCC	1 cut(s)	219
BsiHKAI	GWGCWC	1 cut(s)	718
BsiSI	CCGG	2 cut(s)	357, 588
BslFI	GGGAC	3 cut(s)	279, 557, 776
BslI	CCNNNNNNNGG	3 cut(s)	159, 182, 512
BsmAI	GTCTC	1 cut(s)	610
BsmFI	GGGAC	3 cut(s)	279, 557, 776
BsnI	GGCC	3 cut(s)	276, 548, 568
Bsp1286I	GDGCHC	1 cut(s)	718
Bsp1407I	TGTACA	1 cut(s)	302
Bsp143I	GATC	6 cut(s)	19, 322, 347, 375, 397, 774
BspACI	CCGC	5 cut(s)	41, 257, 288, 593, 624
BspANI	GGCC	3 cut(s)	276, 548, 568
BspCNI	CTCAG	4 cut(s)	354, 431, 534, 670
BspFNI	CGCG	1 cut(s)	288
BspLI	GGNNCC	2 cut(s)	135, 221
BspPI	GGATC	1 cut(s)	370
BspT107I	GGYRCC	1 cut(s)	219
BspTI	CTTAAG	1 cut(s)	467
BsrBI	CCGCTC	1 cut(s)	593
BsrDI	GCAATG	1 cut(s)	34
BsrGI	TGTACA	1 cut(s)	302
BsrI	ACTGG	4 cut(s)	16, 132, 277, 569
BssECI	CCNNGG	1 cut(s)	177
BssMI	GATC	6 cut(s)	19, 322, 347, 375, 397, 774
Bst4CI	ACNGT	3 cut(s)	449, 561, 700
Bst6I	CTCTTC	1 cut(s)	160
BstAFI	CTTAAG	1 cut(s)	467
BstAUI	TGTACA	1 cut(s)	302
BstC8I	GCNNGC	1 cut(s)	255
BstDEI	CTNAG	6 cut(s)	292, 319, 341, 418, 521, 657
BstDSI	CCRYGG	1 cut(s)	177
BstF5I	GGATG	1 cut(s)	404
BstFNI	CGCG	1 cut(s)	288
BstKTI	GATC	6 cut(s)	22, 325, 350, 378, 400, 777
BstMAI	GTCTC	1 cut(s)	610
BstMBI	GATC	6 cut(s)	19, 322, 347, 375, 397, 774
BstMWI	GCNNNNNNNGC	3 cut(s)	315, 526, 590
BstNSI	RCATGY	1 cut(s)	148
BstSCI	CCNGG	1 cut(s)	355
BstSFI	CTRYAG	1 cut(s)	699
BstUI	CGCG	1 cut(s)	288
BstV1I	GCAGC	1 cut(s)	596
BstX2I	RGATCY	2 cut(s)	19, 322
BstYI	RGATCY	2 cut(s)	19, 322
BsuRI	GGCC	3 cut(s)	276, 548, 568
BtgI	CCRYGG	1 cut(s)	177
BtsCI	GGATG	1 cut(s)	404
BtsIMutI	CAGTG	2 cut(s)	125, 696
Cac8I	GCNNGC	1 cut(s)	255
Cfr13I	GGNCC	3 cut(s)	133, 566, 629
Csp6I	GTAC	2 cut(s)	303, 450
CviAII	CATG	3 cut(s)	145, 159, 706
CviQI	GTAC	2 cut(s)	303, 450
DdeI	CTNAG	6 cut(s)	292, 319, 341, 418, 521, 657
DpnI	GATC	6 cut(s)	21, 324, 349, 377, 399, 776
DpnII	GATC	6 cut(s)	19, 322, 347, 375, 397, 774
DraI	TTTAAA	1 cut(s)	243
EaeI	YGGCCR	1 cut(s)	546
Eam1104I	CTCTTC	1 cut(s)	160
EarI	CTCTTC	1 cut(s)	160
Eco32I	GATATC	1 cut(s)	97
Eco47I	GGWCC	2 cut(s)	133, 629
EcoO109I	RGGNCCY	1 cut(s)	133
EcoRV	GATATC	1 cut(s)	97
FaeI	CATG	3 cut(s)	148, 162, 709
FaqI	GGGAC	3 cut(s)	279, 557, 776
FatI	CATG	3 cut(s)	144, 158, 705
FauI	CCCGC	1 cut(s)	34
Fnu4HI	GCNGC	2 cut(s)	289, 585
FokI	GGATG	1 cut(s)	391
Fsp4HI	GCNGC	2 cut(s)	289, 585
FspBI	CTAG	1 cut(s)	63
GluI	GCNGC	2 cut(s)	289, 585
GsuI	CTGGAG	2 cut(s)	149, 489
HaeIII	GGCC	3 cut(s)	276, 548, 568
HapII	CCGG	2 cut(s)	357, 588
Hin1II	CATG	3 cut(s)	148, 162, 709
HincII	GTYRAC	3 cut(s)	9, 150, 489
HindII	GTYRAC	3 cut(s)	9, 150, 489
HindIII	AAGCTT	3 cut(s)	251, 307, 470
HinfI	GANTC	6 cut(s)	72, 207, 267, 499, 618, 764
HpaI	GTTAAC	1 cut(s)	150
HpaII	CCGG	2 cut(s)	357, 588
HphI	GGTGA	1 cut(s)	371
Hpy166II	GTNNAC	3 cut(s)	9, 150, 489
Hpy188I	TCNGA	3 cut(s)	432, 498, 660
Hpy188III	TCNNGA	4 cut(s)	88, 457, 506, 742
Hpy8I	GTNNAC	3 cut(s)	9, 150, 489
HpyAV	CCTTC	1 cut(s)	176
HpyCH4III	ACNGT	3 cut(s)	449, 561, 700
HpyCH4IV	ACGT	1 cut(s)	384
HpyCH4V	TGCA	3 cut(s)	27, 584, 605
HpyF10VI	GCNNNNNNNGC	3 cut(s)	315, 526, 590
HpyF3I	CTNAG	6 cut(s)	292, 319, 341, 418, 521, 657
HpySE526I	ACGT	1 cut(s)	384
Hsp92II	CATG	3 cut(s)	148, 162, 709
KspAI	GTTAAC	1 cut(s)	150
Kzo9I	GATC	6 cut(s)	19, 322, 347, 375, 397, 774
LmnI	GCTCC	2 cut(s)	590, 713
Lsp1109I	GCAGC	1 cut(s)	596
LweI	GCATC	1 cut(s)	131
MaeI	CTAG	1 cut(s)	63
MaeII	ACGT	1 cut(s)	384
MaeIII	GTNAC	2 cut(s)	194, 783
MalI	GATC	6 cut(s)	21, 324, 349, 377, 399, 776
MbiI	CCGCTC	1 cut(s)	593
MboI	GATC	6 cut(s)	19, 322, 347, 375, 397, 774
MboII	GAAGA	2 cut(s)	147, 649
MflI	RGATCY	2 cut(s)	19, 322
MhlI	GDGCHC	1 cut(s)	718
MlsI	TGGCCA	1 cut(s)	548
MluCI	AATT	5 cut(s)	298, 351, 371, 426, 640
MluNI	TGGCCA	1 cut(s)	548
MlyI	GAGTC	3 cut(s)	261, 612, 758
MmeI	TCCRAC	2 cut(s)	432, 468
MnlI	CCTC	7 cut(s)	124, 163, 294, 350, 513, 658, 672
Mox20I	TGGCCA	1 cut(s)	548
MscI	TGGCCA	1 cut(s)	548
MseI	TTAA	5 cut(s)	149, 242, 311, 468, 531
MslI	CAYNNNNRTG	1 cut(s)	225
Msp20I	TGGCCA	1 cut(s)	548
MspCI	CTTAAG	1 cut(s)	467
MspI	CCGG	2 cut(s)	357, 588
MspR9I	CCNGG	1 cut(s)	357
MvnI	CGCG	1 cut(s)	288
MwoI	GCNNNNNNNGC	3 cut(s)	315, 526, 590
NciI	CCSGG	1 cut(s)	357
NdeII	GATC	6 cut(s)	19, 322, 347, 375, 397, 774
NlaIII	CATG	3 cut(s)	148, 162, 709
NlaIV	GGNNCC	2 cut(s)	135, 221
NmuCI	GTSAC	1 cut(s)	783
NspI	RCATGY	1 cut(s)	148
PciI	ACATGT	1 cut(s)	144
PfeI	GAWTC	3 cut(s)	72, 207, 499
PflMI	CCANNNNNTGG	1 cut(s)	512
PkrI	GCNGC	2 cut(s)	290, 586
PleI	GAGTC	3 cut(s)	261, 612, 758
PpsI	GAGTC	3 cut(s)	261, 612, 758
PpuMI	RGGWCCY	1 cut(s)	133
PscI	ACATGT	1 cut(s)	144
Psp5II	RGGWCCY	1 cut(s)	133
PspN4I	GGNNCC	2 cut(s)	135, 221
PspPI	GGNCC	3 cut(s)	133, 566, 629
PspPPI	RGGWCCY	1 cut(s)	133
PsuI	RGATCY	2 cut(s)	19, 322
RsaI	GTAC	2 cut(s)	304, 451
RsaNI	GTAC	2 cut(s)	303, 450
RseI	CAYNNNNRTG	1 cut(s)	225
SaqAI	TTAA	5 cut(s)	149, 242, 311, 468, 531
SatI	GCNGC	2 cut(s)	289, 585
Sau3AI	GATC	6 cut(s)	19, 322, 347, 375, 397, 774
Sau96I	GGNCC	3 cut(s)	133, 566, 629
SchI	GAGTC	3 cut(s)	261, 612, 758
ScrFI	CCNGG	1 cut(s)	357
SduI	GDGCHC	1 cut(s)	718
SetI	ASST	9 cut(s)	155, 187, 255, 311, 387, 416, 474, 581, 602
SfaNI	GCATC	1 cut(s)	131
SfcI	CTRYAG	1 cut(s)	699
SinI	GGWCC	2 cut(s)	133, 629
SmiMI	CAYNNNNRTG	1 cut(s)	225
SmlI	CTYRAG	3 cut(s)	106, 467, 740
SmoI	CTYRAG	3 cut(s)	106, 467, 740
Sse9I	AATT	5 cut(s)	298, 351, 371, 426, 640
SsiI	CCGC	5 cut(s)	41, 257, 288, 593, 624
SspMI	CTAG	1 cut(s)	63
StyD4I	CCNGG	1 cut(s)	355
TaaI	ACNGT	3 cut(s)	449, 561, 700
TaiI	ACGT	1 cut(s)	387
TaqI	TCGA	5 cut(s)	87, 210, 329, 346, 767
TasI	AATT	5 cut(s)	298, 351, 371, 426, 640
TatI	WGTACW	2 cut(s)	302, 449
TauI	GCSGC	1 cut(s)	291
TfiI	GAWTC	3 cut(s)	72, 207, 499
Tru1I	TTAA	5 cut(s)	149, 242, 311, 468, 531
Tru9I	TTAA	5 cut(s)	149, 242, 311, 468, 531
TscAI	CASTG	2 cut(s)	132, 703
TseFI	GTSAC	1 cut(s)	783
TseI	GCWGC	1 cut(s)	584
Tsp45I	GTSAC	1 cut(s)	783
TspDTI	ATGAA	4 cut(s)	64, 147, 178, 356
TspGWI	ACGGA	1 cut(s)	194
TspRI	CASTG	2 cut(s)	132, 703
Van91I	CCANNNNNTGG	1 cut(s)	512
Vha464I	CTTAAG	1 cut(s)	467
VpaK11BI	GGWCC	2 cut(s)	133, 629
XapI	RAATTY	1 cut(s)	426
XceI	RCATGY	1 cut(s)	148
XspI	CTAG	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.