Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003453

Physical Location & Seq

Genomic Coordinates Forward (+)

24330602 .. 24331387

Gene Structure 786 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012959

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGTTGTTGACTGGACGAGATCTTTGCAATGTTTTTCTTGCGGGTGTTTTCTTGTTATTGCTTAGTTGTAGATTCATTTCTGGTGGAGAGAGTGATATCAACTGCTTGAGAAGTATAAAAGCATCACTGGAGGACCCTTTAGACATGTTAACTTCTTCGTGGGATTTTAACAATCAGACCGACGGTTTTATCTGTAACTTTCTGGGAATCGAGTGTTGGCACCCTGATGAGAACAAAGTTGTAATGATCAAGCTTGCGGAGTTGGGATTCAAAGGCCAGTTTCCTCACGGAGTAAAGAATTGTACAAGCTTAACAGGCTTAGATCTTTCGAGCAACGACCTCAGTGGAACTATTCCTGATGATATCCATACATTGATCCCTTACGTTACGTGGCTTGATCTCTCGTCCAACAGCTTCTCAGGGGAAATTCCGCATACCATCTCCAACTGTACTTTCCTGAATGGCCTTAAGCTTGACAACAATCAGTTCTCCGGTCAGATTCCTCAAGGAATTGGTCAGCTCAGAAGGCTTTTCACATTTAGCGTGGCCAACAATCGACTGTCTGGGCCTGTCCCCACCTTCAACAGTAAGGATGGTACAATCGGAGCGGACAGCTATGCAAACAATCCTGGACTCTGCGGTGGTCCTTTGAAGAATTGCCCGTCATCATCTCAGAACAAGAATGATTTAGTGAGCGTTTTCAAGTCTTACACTGTAGTCATGTTGGGAGCACTCGGTTTTGGTATTGGTTTTGTTTTCTCTTTTTCTTTTGTCGTCTTTCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010941 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0031348 GO:0033612 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0060548 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

262

Amino Acids

28.36

Weight (kDa)

5.28

Isoelectric Point (pI)

28.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	31 - 73	5e-06	Leucine rich repeat N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003453)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04660 FvH4_2g17431
malus_domestica	MD05G1153200.v1.1 MD10G1147500.v1.1
prunus_persica	Prupe.8G186300_v2.0.a1 Prupe.8G186400_v2.0.a1 Prupe.8G186500_v2.0.a1 Prupe.8G186600_v2.0.a1
pyrus_communis	pycom05g14760 pycom10g12710 pycom10g12740
rosa_chinensis	RchiOBHm_Chr6g0281591 RchiOBHm_Chr6g0281611 RchiOBHm_Chr6g0282141
rosa_laevigata	RLG00000012906 RLG00000012907 RLG00000012959
rosa_multiflora	Rmu_sc0006897.1_g000004
rosa_roxburghii	Rroxscaffold_7G00186470
rosa_rugosa	Rorug06G0142000 Rorug06G0145600 Rorug06G0170000
rosa_samantha	Rh6AG047800 Rh6AG254400 Rh6AG258700 Rh6BG044300 Rh6BG257600 Rh6BG262000 Rh6BG262200 Rh6CG256700 Rh6CG261000 Rh6DG248500 Rh6DG248600 Rh6DG253000
rosa_wichuraiana	Rw6G022090 Rw6G022390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	219
AccBSI	CCGCTC	1 cut(s)	608
AciI	CCGC	5 cut(s)	41, 257, 431, 608, 639
AclWI	GGATC	1 cut(s)	370
AcoI	YGGCCR	1 cut(s)	546
AcsI	RAATTY	1 cut(s)	426
AfaI	GTAC	3 cut(s)	304, 451, 598
AflII	CTTAAG	1 cut(s)	467
AflIII	ACRYGT	1 cut(s)	144
AgsI	TTSAA	4 cut(s)	271, 583, 652, 703
AjnI	CCWGG	1 cut(s)	628
AjuI	GAANNNNNNNTTGG	4 cut(s)	199, 231, 437, 469
AluBI	AGCT	6 cut(s)	253, 309, 414, 472, 520, 615
AluI	AGCT	6 cut(s)	253, 309, 414, 472, 520, 615
Alw21I	GWGCWC	1 cut(s)	733
AlwI	GGATC	1 cut(s)	370
AoxI	GGCC	4 cut(s)	274, 463, 546, 566
ApoI	RAATTY	1 cut(s)	426
ArsI	GACNNNNNNTTYG	1 cut(s)	38
AspS9I	GGNCC	3 cut(s)	133, 566, 644
AvaII	GGWCC	2 cut(s)	133, 644
BalI	TGGCCA	1 cut(s)	548
BanI	GGYRCC	1 cut(s)	219
Bbv12I	GWGCWC	1 cut(s)	733
BccI	CCATC	2 cut(s)	446, 587
BcgI	CGANNNNNNTGC	2 cut(s)	6, 40
BciT130I	CCWGG	1 cut(s)	630
BclI	TGATCA	1 cut(s)	246
BfmI	CTRYAG	1 cut(s)	714
BfrI	CTTAAG	1 cut(s)	467
BglII	AGATCT	2 cut(s)	19, 322
Bme1390I	CCNGG	1 cut(s)	630
Bme18I	GGWCC	2 cut(s)	133, 644
BmgT120I	GGNCC	3 cut(s)	133, 566, 644
BmiI	GGNNCC	2 cut(s)	135, 221
BmrFI	CCNGG	1 cut(s)	630
BmsI	GCATC	1 cut(s)	131
BpmI	CTGGAG	1 cut(s)	149
BpuEI	CTTGAG	2 cut(s)	127, 489
BsaAI	YACGTR	1 cut(s)	390
BsaWI	WCCGGW	1 cut(s)	491
Bse1I	ACTGG	3 cut(s)	16, 132, 277
Bse3DI	GCAATG	1 cut(s)	34
BseBI	CCWGG	1 cut(s)	630
BseGI	GGATG	1 cut(s)	598
BseMI	GCAATG	1 cut(s)	34
BseMII	CTCAG	4 cut(s)	355, 432, 535, 686
BseNI	ACTGG	3 cut(s)	16, 132, 277
BshFI	GGCC	4 cut(s)	276, 465, 548, 568
BshNI	GGYRCC	1 cut(s)	219
BsiHKAI	GWGCWC	1 cut(s)	733
BsiSI	CCGG	1 cut(s)	492
BslFI	GGGAC	1 cut(s)	557
BsmFI	GGGAC	1 cut(s)	557
BsnI	GGCC	4 cut(s)	276, 465, 548, 568
Bsp1286I	GDGCHC	1 cut(s)	733
Bsp1407I	TGTACA	1 cut(s)	302
Bsp143I	GATC	5 cut(s)	19, 246, 322, 375, 397
BspACI	CCGC	5 cut(s)	41, 257, 431, 608, 639
BspANI	GGCC	4 cut(s)	276, 465, 548, 568
BspCNI	CTCAG	4 cut(s)	354, 431, 534, 685
BspLI	GGNNCC	2 cut(s)	135, 221
BspPI	GGATC	1 cut(s)	370
BspT107I	GGYRCC	1 cut(s)	219
BspTI	CTTAAG	1 cut(s)	467
BsrBI	CCGCTC	1 cut(s)	608
BsrDI	GCAATG	1 cut(s)	34
BsrGI	TGTACA	1 cut(s)	302
BsrI	ACTGG	3 cut(s)	16, 132, 277
BssMI	GATC	5 cut(s)	19, 246, 322, 375, 397
Bst2UI	CCWGG	1 cut(s)	630
Bst4CI	ACNGT	5 cut(s)	185, 449, 561, 587, 715
BstAFI	CTTAAG	1 cut(s)	467
BstAUI	TGTACA	1 cut(s)	302
BstBAI	YACGTR	1 cut(s)	390
BstC8I	GCNNGC	1 cut(s)	255
BstDEI	CTNAG	6 cut(s)	62, 319, 341, 418, 521, 672
BstF5I	GGATG	1 cut(s)	598
BstKTI	GATC	5 cut(s)	22, 249, 325, 378, 400
BstMBI	GATC	5 cut(s)	19, 246, 322, 375, 397
BstMWI	GCNNNNNNNGC	2 cut(s)	315, 526
BstNI	CCWGG	1 cut(s)	630
BstNSI	RCATGY	1 cut(s)	148
BstSCI	CCNGG	1 cut(s)	628
BstSFI	CTRYAG	1 cut(s)	714
BstX2I	RGATCY	2 cut(s)	19, 322
BstYI	RGATCY	2 cut(s)	19, 322
BsuRI	GGCC	4 cut(s)	276, 465, 548, 568
BtsCI	GGATG	1 cut(s)	598
BtsIMutI	CAGTG	3 cut(s)	125, 349, 711
Cac8I	GCNNGC	1 cut(s)	255
Cfr13I	GGNCC	3 cut(s)	133, 566, 644
Csp6I	GTAC	3 cut(s)	303, 450, 597
CviAII	CATG	2 cut(s)	145, 721
CviQI	GTAC	3 cut(s)	303, 450, 597
DdeI	CTNAG	6 cut(s)	62, 319, 341, 418, 521, 672
DpnI	GATC	5 cut(s)	21, 248, 324, 377, 399
DpnII	GATC	5 cut(s)	19, 246, 322, 375, 397
EaeI	YGGCCR	1 cut(s)	546
Eco32I	GATATC	2 cut(s)	97, 364
Eco47I	GGWCC	2 cut(s)	133, 644
EcoO109I	RGGNCCY	1 cut(s)	133
EcoRII	CCWGG	1 cut(s)	628
EcoRV	GATATC	2 cut(s)	97, 364
FaeI	CATG	2 cut(s)	148, 724
FaiI	YATR	6 cut(s)	116, 146, 369, 435, 618, 722
FaqI	GGGAC	1 cut(s)	557
FatI	CATG	2 cut(s)	144, 720
FauI	CCCGC	1 cut(s)	34
FbaI	TGATCA	1 cut(s)	246
FokI	GGATG	1 cut(s)	605
GsuI	CTGGAG	1 cut(s)	149
HaeIII	GGCC	4 cut(s)	276, 465, 548, 568
HapII	CCGG	1 cut(s)	492
Hin1II	CATG	2 cut(s)	148, 724
HincII	GTYRAC	2 cut(s)	9, 150
HindII	GTYRAC	2 cut(s)	9, 150
HindIII	AAGCTT	3 cut(s)	251, 307, 470
HinfI	GANTC	5 cut(s)	72, 207, 267, 499, 633
HpaI	GTTAAC	1 cut(s)	150
HpaII	CCGG	1 cut(s)	492
Hpy166II	GTNNAC	2 cut(s)	9, 150
Hpy188I	TCNGA	5 cut(s)	177, 498, 524, 605, 675
Hpy188III	TCNNGA	2 cut(s)	356, 457
Hpy8I	GTNNAC	2 cut(s)	9, 150
Hpy99I	CGWCG	1 cut(s)	185
HpyAV	CCTTC	2 cut(s)	519, 589
HpyCH4III	ACNGT	5 cut(s)	185, 449, 561, 587, 715
HpyCH4IV	ACGT	2 cut(s)	384, 389
HpyCH4V	TGCA	2 cut(s)	27, 620
HpyF10VI	GCNNNNNNNGC	2 cut(s)	315, 526
HpyF3I	CTNAG	6 cut(s)	62, 319, 341, 418, 521, 672
HpySE526I	ACGT	2 cut(s)	384, 389
Hsp92II	CATG	2 cut(s)	148, 724
Ksp22I	TGATCA	1 cut(s)	246
KspAI	GTTAAC	1 cut(s)	150
Kzo9I	GATC	5 cut(s)	19, 246, 322, 375, 397
LmnI	GCTCC	2 cut(s)	605, 728
LweI	GCATC	1 cut(s)	131
MaeII	ACGT	2 cut(s)	384, 389
MaeIII	GTNAC	2 cut(s)	194, 385
MalI	GATC	5 cut(s)	21, 248, 324, 377, 399
MbiI	CCGCTC	1 cut(s)	608
MboI	GATC	5 cut(s)	19, 246, 322, 375, 397
MboII	GAAGA	2 cut(s)	147, 664
MflI	RGATCY	2 cut(s)	19, 322
MhlI	GDGCHC	1 cut(s)	733
MlsI	TGGCCA	1 cut(s)	548
MluCI	AATT	4 cut(s)	298, 426, 510, 655
MluNI	TGGCCA	1 cut(s)	548
MlyI	GAGTC	1 cut(s)	627
MmeI	TCCRAC	2 cut(s)	432, 468
MnlI	CCTC	4 cut(s)	124, 294, 350, 513
Mox20I	TGGCCA	1 cut(s)	548
MscI	TGGCCA	1 cut(s)	548
MseI	TTAA	4 cut(s)	149, 168, 311, 468
MslI	CAYNNNNRTG	1 cut(s)	225
Msp20I	TGGCCA	1 cut(s)	548
MspCI	CTTAAG	1 cut(s)	467
MspI	CCGG	1 cut(s)	492
MspR9I	CCNGG	1 cut(s)	630
MvaI	CCWGG	1 cut(s)	630
MwoI	GCNNNNNNNGC	2 cut(s)	315, 526
NdeII	GATC	5 cut(s)	19, 246, 322, 375, 397
NlaIII	CATG	2 cut(s)	148, 724
NlaIV	GGNNCC	2 cut(s)	135, 221
NspI	RCATGY	1 cut(s)	148
PciI	ACATGT	1 cut(s)	144
PfeI	GAWTC	4 cut(s)	72, 207, 267, 499
PfoI	TCCNGGA	1 cut(s)	628
PleI	GAGTC	1 cut(s)	627
PpsI	GAGTC	1 cut(s)	627
Ppu21I	YACGTR	1 cut(s)	390
PpuMI	RGGWCCY	1 cut(s)	133
PscI	ACATGT	1 cut(s)	144
Psp5II	RGGWCCY	1 cut(s)	133
Psp6I	CCWGG	1 cut(s)	628
PspGI	CCWGG	1 cut(s)	628
PspN4I	GGNNCC	2 cut(s)	135, 221
PspPI	GGNCC	3 cut(s)	133, 566, 644
PspPPI	RGGWCCY	1 cut(s)	133
PsuI	RGATCY	2 cut(s)	19, 322
RsaI	GTAC	3 cut(s)	304, 451, 598
RsaNI	GTAC	3 cut(s)	303, 450, 597
RseI	CAYNNNNRTG	1 cut(s)	225
SaqAI	TTAA	4 cut(s)	149, 168, 311, 468
Sau3AI	GATC	5 cut(s)	19, 246, 322, 375, 397
Sau96I	GGNCC	3 cut(s)	133, 566, 644
SchI	GAGTC	1 cut(s)	627
ScrFI	CCNGG	1 cut(s)	630
SduI	GDGCHC	1 cut(s)	733
SfaNI	GCATC	1 cut(s)	131
SfcI	CTRYAG	1 cut(s)	714
SinI	GGWCC	2 cut(s)	133, 644
SmiMI	CAYNNNNRTG	1 cut(s)	225
SmlI	CTYRAG	3 cut(s)	106, 467, 504
SmoI	CTYRAG	3 cut(s)	106, 467, 504
Sse9I	AATT	4 cut(s)	298, 426, 510, 655
SsiI	CCGC	5 cut(s)	41, 257, 431, 608, 639
StyD4I	CCNGG	1 cut(s)	628
TaaI	ACNGT	5 cut(s)	185, 449, 561, 587, 715
TaiI	ACGT	2 cut(s)	387, 392
TaqI	TCGA	4 cut(s)	210, 329, 556, 781
TaqII	GACCGA	1 cut(s)	194
TasI	AATT	4 cut(s)	298, 426, 510, 655
TatI	WGTACW	2 cut(s)	302, 449
TfiI	GAWTC	4 cut(s)	72, 207, 267, 499
Tru1I	TTAA	4 cut(s)	149, 168, 311, 468
Tru9I	TTAA	4 cut(s)	149, 168, 311, 468
TscAI	CASTG	3 cut(s)	132, 349, 718
TspDTI	ATGAA	1 cut(s)	64
TspGWI	ACGGA	1 cut(s)	303
TspRI	CASTG	3 cut(s)	132, 349, 718
Vha464I	CTTAAG	1 cut(s)	467
VpaK11BI	GGWCC	2 cut(s)	133, 644
XapI	RAATTY	1 cut(s)	426
XceI	RCATGY	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.