Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0003453

Physical Location & Seq

Genomic Coordinates Reverse (-)

16232215 .. 16232895

Gene Structure 681 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g12710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGATTTCTTAGTACGTGATACCTTGTTGAGCAAACAACATCTTCTTGGCAGCATTTTTATTTGTTGCCTCTTATTGCTTACTTGTAGTTTCAGCTTTGGTGTTGAGAGTGATATTAGCTGCCTCAAAAGCATAAAAGCCTCACTTGAAGATCCTTCAGGGTACTTAAGCCTTTCATGGGATTTTAGCAACACCACCGAAGGCTTCATCTGCAAATTTCTTGGAATCGAGTGCTGGCACCCAAACGAGAACAAAGTTTTGAACATCAAGCTTTCGGATTTGGGACTAAAAGGTCAGTTTCCTCGGGGCTTATCTAACTGCTCAAGCTTAACTGGCCTAGATCTGTCCGGCAACAAGCTCAGTGGACCTCTTCCTGAAGATATTGGTAGAATCCTTGCGTTTATTACGACTCTCGATCTCTCATCGAACAGCTTCTCGGGGAAAATCCCCCCGAGTCTTTCGAATTGTACCTATCTGAATGTGCTTAAGCTTGAAAACAATGAGTTCTCGGGTGAAATTCCTCAACAACTTGCCCAGCTCAAAAGGCTTAAAACATTTAGCGTGGCCAACAATAGACTATCCGGTCCAGTCCCAAATTTCGACGGTTCTGTTTCATTCGGACCGGAAAGCTACGCAGGCAACTCCGGACTCTGTGGAGGCCCGTTGAAGCCTTGCCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010941 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0031348 GO:0033612 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0060548 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

227

Amino Acids

24.41

Weight (kDa)

5.71

Isoelectric Point (pI)

33.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	36 - 79	7e-06	Leucine rich repeat N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003453)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04660 FvH4_2g17431
malus_domestica	MD05G1153200.v1.1 MD10G1147500.v1.1
prunus_persica	Prupe.8G186300_v2.0.a1 Prupe.8G186400_v2.0.a1 Prupe.8G186500_v2.0.a1 Prupe.8G186600_v2.0.a1
pyrus_communis	pycom05g14760 pycom10g12710 pycom10g12740
rosa_chinensis	RchiOBHm_Chr6g0281591 RchiOBHm_Chr6g0281611 RchiOBHm_Chr6g0282141
rosa_laevigata	RLG00000012906 RLG00000012907 RLG00000012959
rosa_multiflora	Rmu_sc0006897.1_g000004
rosa_roxburghii	Rroxscaffold_7G00186470
rosa_rugosa	Rorug06G0142000 Rorug06G0145600 Rorug06G0170000
rosa_samantha	Rh6AG047800 Rh6AG254400 Rh6AG258700 Rh6BG044300 Rh6BG257600 Rh6BG262000 Rh6BG262200 Rh6CG256700 Rh6CG261000 Rh6DG248500 Rh6DG248600 Rh6DG253000
rosa_wichuraiana	Rw6G022090 Rw6G022390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	291, 582
AccB1I	GGYRCC	1 cut(s)	237
AccIII	TCCGGA	1 cut(s)	644
AclWI	GGATC	1 cut(s)	146
AcoI	YGGCCR	1 cut(s)	564
AcsI	RAATTY	3 cut(s)	215, 516, 595
AcuI	CTGAAG	2 cut(s)	141, 396
AfaI	GTAC	3 cut(s)	15, 164, 469
AfiI	CCNNNNNNNGG	1 cut(s)	178
AflII	CTTAAG	2 cut(s)	166, 485
AgsI	TTSAA	4 cut(s)	149, 262, 494, 667
AluBI	AGCT	9 cut(s)	96, 120, 271, 327, 358, 432, 490, 538, 630
AluI	AGCT	9 cut(s)	96, 120, 271, 327, 358, 432, 490, 538, 630
AlwI	GGATC	1 cut(s)	146
Ama87I	CYCGRG	4 cut(s)	303, 436, 451, 508
Aor13HI	TCCGGA	1 cut(s)	644
AoxI	GGCC	3 cut(s)	334, 564, 658
ApeKI	GCWGC	2 cut(s)	51, 120
ApoI	RAATTY	3 cut(s)	215, 516, 595
Asp700I	GAANNNNTTC	1 cut(s)	431
AspS9I	GGNCC	4 cut(s)	365, 584, 620, 659
AsuHPI	GGTGA	1 cut(s)	524
AsuII	TTCGAA	1 cut(s)	461
AvaI	CYCGRG	4 cut(s)	303, 436, 451, 508
AvaII	GGWCC	3 cut(s)	365, 584, 620
BalI	TGGCCA	1 cut(s)	566
BanI	GGYRCC	1 cut(s)	237
BbvI	GCAGC	2 cut(s)	63, 107
BfaI	CTAG	1 cut(s)	338
BfrI	CTTAAG	2 cut(s)	166, 485
BglII	AGATCT	1 cut(s)	340
BisI	GCNGC	2 cut(s)	52, 121
BlsI	GCNGC	2 cut(s)	53, 122
Bme18I	GGWCC	3 cut(s)	365, 584, 620
BmeT110I	CYCGRG	4 cut(s)	303, 436, 451, 508
BmgT120I	GGNCC	4 cut(s)	365, 584, 620, 659
BmiI	GGNNCC	1 cut(s)	239
Bpu14I	TTCGAA	1 cut(s)	461
BpuEI	CTTGAG	1 cut(s)	307
BsaAI	YACGTR	1 cut(s)	17
BsaJI	CCNNGG	1 cut(s)	302
BsaWI	WCCGGW	3 cut(s)	581, 622, 644
Bsc4I	CCNNNNNNNGG	1 cut(s)	178
Bse1I	ACTGG	3 cut(s)	337, 587, 676
BseAI	TCCGGA	1 cut(s)	644
BseDI	CCNNGG	1 cut(s)	302
BseLI	CCNNNNNNNGG	1 cut(s)	178
BseMII	CTCAG	1 cut(s)	373
BseNI	ACTGG	3 cut(s)	337, 587, 676
BseXI	GCAGC	2 cut(s)	63, 107
BseYI	CCCAGC	1 cut(s)	534
BshFI	GGCC	3 cut(s)	336, 566, 660
BshNI	GGYRCC	1 cut(s)	237
BsiHKCI	CYCGRG	4 cut(s)	303, 436, 451, 508
BsiSI	CCGG	4 cut(s)	348, 582, 623, 645
BslFI	GGGAC	2 cut(s)	297, 575
BslI	CCNNNNNNNGG	1 cut(s)	178
BsmFI	GGGAC	2 cut(s)	297, 575
BsnI	GGCC	3 cut(s)	336, 566, 660
BsoBI	CYCGRG	4 cut(s)	303, 436, 451, 508
Bsp119I	TTCGAA	1 cut(s)	461
Bsp13I	TCCGGA	1 cut(s)	644
Bsp143I	GATC	3 cut(s)	151, 340, 415
BspANI	GGCC	3 cut(s)	336, 566, 660
BspCNI	CTCAG	1 cut(s)	372
BspEI	TCCGGA	1 cut(s)	644
BspLI	GGNNCC	1 cut(s)	239
BspPI	GGATC	1 cut(s)	146
BspT104I	TTCGAA	1 cut(s)	461
BspT107I	GGYRCC	1 cut(s)	237
BspTI	CTTAAG	2 cut(s)	166, 485
BsrI	ACTGG	3 cut(s)	337, 587, 676
BssECI	CCNNGG	1 cut(s)	302
BssMI	GATC	3 cut(s)	151, 340, 415
Bst4CI	ACNGT	1 cut(s)	605
Bst6I	CTCTTC	1 cut(s)	375
BstAFI	CTTAAG	2 cut(s)	166, 485
BstBAI	YACGTR	1 cut(s)	17
BstBI	TTCGAA	1 cut(s)	461
BstC8I	GCNNGC	2 cut(s)	236, 637
BstDEI	CTNAG	2 cut(s)	10, 359
BstKTI	GATC	3 cut(s)	154, 343, 418
BstMBI	GATC	3 cut(s)	151, 340, 415
BstMWI	GCNNNNNNNGC	5 cut(s)	129, 210, 333, 544, 636
BstV1I	GCAGC	2 cut(s)	63, 107
BstX2I	RGATCY	2 cut(s)	151, 340
BstYI	RGATCY	2 cut(s)	151, 340
BsuRI	GGCC	3 cut(s)	336, 566, 660
BtsIMutI	CAGTG	1 cut(s)	367
Cac8I	GCNNGC	2 cut(s)	236, 637
Cfr13I	GGNCC	4 cut(s)	365, 584, 620, 659
CpoI	CGGWCCG	1 cut(s)	620
Csp6I	GTAC	3 cut(s)	14, 163, 468
CspCI	CAANNNNNGTGG	2 cut(s)	343, 378
CspI	CGGWCCG	1 cut(s)	620
CviAII	CATG	1 cut(s)	177
CviQI	GTAC	3 cut(s)	14, 163, 468
DdeI	CTNAG	2 cut(s)	10, 359
DpnI	GATC	3 cut(s)	153, 342, 417
DpnII	GATC	3 cut(s)	151, 340, 415
DrdI	GACNNNNNNGTC	2 cut(s)	291, 582
DseDI	GACNNNNNNGTC	2 cut(s)	291, 582
EaeI	YGGCCR	1 cut(s)	564
Eam1104I	CTCTTC	1 cut(s)	375
EarI	CTCTTC	1 cut(s)	375
Eco47I	GGWCC	3 cut(s)	365, 584, 620
Eco57I	CTGAAG	2 cut(s)	141, 396
Eco88I	CYCGRG	4 cut(s)	303, 436, 451, 508
FaeI	CATG	1 cut(s)	180
FaiI	YATR	2 cut(s)	134, 178
FalI	AAGNNNNNCTT	2 cut(s)	129, 161
FaqI	GGGAC	2 cut(s)	297, 575
FatI	CATG	1 cut(s)	176
Fnu4HI	GCNGC	2 cut(s)	52, 121
Fsp4HI	GCNGC	2 cut(s)	52, 121
FspBI	CTAG	1 cut(s)	338
GluI	GCNGC	2 cut(s)	52, 121
GsaI	CCCAGC	1 cut(s)	538
HaeIII	GGCC	3 cut(s)	336, 566, 660
HapII	CCGG	4 cut(s)	348, 582, 623, 645
Hin1II	CATG	1 cut(s)	180
HindIII	AAGCTT	3 cut(s)	269, 325, 488
HinfI	GANTC	5 cut(s)	225, 390, 409, 454, 648
HpaII	CCGG	4 cut(s)	348, 582, 623, 645
HphI	GGTGA	1 cut(s)	524
Hpy166II	GTNNAC	1 cut(s)	365
Hpy188I	TCNGA	3 cut(s)	277, 477, 620
Hpy188III	TCNNGA	3 cut(s)	374, 413, 645
Hpy8I	GTNNAC	1 cut(s)	365
Hpy99I	CGWCG	1 cut(s)	605
HpyAV	CCTTC	2 cut(s)	165, 194
HpyCH4III	ACNGT	1 cut(s)	605
HpyCH4IV	ACGT	1 cut(s)	16
HpyCH4V	TGCA	1 cut(s)	213
HpyF10VI	GCNNNNNNNGC	5 cut(s)	129, 210, 333, 544, 636
HpyF3I	CTNAG	2 cut(s)	10, 359
HpySE526I	ACGT	1 cut(s)	16
Hsp92II	CATG	1 cut(s)	180
Kpn2I	TCCGGA	1 cut(s)	644
Kzo9I	GATC	3 cut(s)	151, 340, 415
Lsp1109I	GCAGC	2 cut(s)	63, 107
MaeI	CTAG	1 cut(s)	338
MaeII	ACGT	1 cut(s)	16
MalI	GATC	3 cut(s)	153, 342, 417
MboI	GATC	3 cut(s)	151, 340, 415
MboII	GAAGA	4 cut(s)	35, 161, 362, 389
MflI	RGATCY	2 cut(s)	151, 340
MlsI	TGGCCA	1 cut(s)	566
MluCI	AATT	4 cut(s)	215, 463, 516, 595
MluNI	TGGCCA	1 cut(s)	566
MlyI	GAGTC	3 cut(s)	403, 463, 642
MnlI	CCTC	7 cut(s)	80, 134, 151, 312, 378, 531, 650
Mox20I	TGGCCA	1 cut(s)	566
MroI	TCCGGA	1 cut(s)	644
MroXI	GAANNNNTTC	1 cut(s)	431
MscI	TGGCCA	1 cut(s)	566
MseI	TTAA	4 cut(s)	167, 329, 486, 549
Msp20I	TGGCCA	1 cut(s)	566
MspCI	CTTAAG	2 cut(s)	166, 485
MspI	CCGG	4 cut(s)	348, 582, 623, 645
MwoI	GCNNNNNNNGC	5 cut(s)	129, 210, 333, 544, 636
NdeII	GATC	3 cut(s)	151, 340, 415
NlaIII	CATG	1 cut(s)	180
NlaIV	GGNNCC	1 cut(s)	239
NspV	TTCGAA	1 cut(s)	461
PdmI	GAANNNNTTC	1 cut(s)	431
PfeI	GAWTC	2 cut(s)	225, 390
PkrI	GCNGC	2 cut(s)	53, 122
PleI	GAGTC	3 cut(s)	403, 462, 642
PpsI	GAGTC	3 cut(s)	403, 462, 642
Ppu21I	YACGTR	1 cut(s)	17
PspFI	CCCAGC	1 cut(s)	534
PspN4I	GGNNCC	1 cut(s)	239
PspPI	GGNCC	4 cut(s)	365, 584, 620, 659
PsuI	RGATCY	2 cut(s)	151, 340
RsaI	GTAC	3 cut(s)	15, 164, 469
RsaNI	GTAC	3 cut(s)	14, 163, 468
Rsr2I	CGGWCCG	1 cut(s)	620
RsrII	CGGWCCG	1 cut(s)	620
SaqAI	TTAA	4 cut(s)	167, 329, 486, 549
SatI	GCNGC	2 cut(s)	52, 121
Sau3AI	GATC	3 cut(s)	151, 340, 415
Sau96I	GGNCC	4 cut(s)	365, 584, 620, 659
SchI	GAGTC	3 cut(s)	403, 463, 642
SfuI	TTCGAA	1 cut(s)	461
SinI	GGWCC	3 cut(s)	365, 584, 620
SmlI	CTYRAG	3 cut(s)	166, 322, 485
SmoI	CTYRAG	3 cut(s)	166, 322, 485
Sse9I	AATT	4 cut(s)	215, 463, 516, 595
SspMI	CTAG	1 cut(s)	338
TaaI	ACNGT	1 cut(s)	605
TaiI	ACGT	1 cut(s)	19
TaqI	TCGA	5 cut(s)	228, 414, 425, 461, 600
TasI	AATT	4 cut(s)	215, 463, 516, 595
TfiI	GAWTC	2 cut(s)	225, 390
Tru1I	TTAA	4 cut(s)	167, 329, 486, 549
Tru9I	TTAA	4 cut(s)	167, 329, 486, 549
TscAI	CASTG	1 cut(s)	367
TseI	GCWGC	2 cut(s)	51, 120
TspDTI	ATGAA	3 cut(s)	165, 196, 603
TspRI	CASTG	1 cut(s)	367
Vha464I	CTTAAG	2 cut(s)	166, 485
VpaK11BI	GGWCC	3 cut(s)	365, 584, 620
XapI	RAATTY	3 cut(s)	215, 516, 595
XmnI	GAANNNNTTC	1 cut(s)	431
XspI	CTAG	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.