Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003453

Physical Location & Seq

Genomic Coordinates Forward (+)

20163057 .. 20165683

Gene Structure 2627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0142000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGCGGCAGTAGCAGTAGCAGCAGCGGTAGTTGGAGCTCCAACCCGGCTCCACCGCCTCCTCCACCACCCACCACCCTCCTTTTTCCTCAAACCCCTTCTCATCTCCACCACCGCCGTATCCAAACAACCCCAAATGCGACGCCCCAAACTTATCTCCACTTGTTTTCCTTTCATCCCCTCACGCCTCTTCTGCCACTCCCTTCCCGCCATCAAAGCCTCTCTGCAAGTAGAACAACCAACCCAAGAACTCGATGAGGAAGCTGAGAATGAAGATGAGAACTTGGATTCTGCTTCTTCTTCTTCTGTTCTCGGAAGTCTAGACGATGAAAATGGTGAGGAAGGTGAGACTGAAGCTGGGAAATTGGATACCAACGACGCTGCCCGAATGAATTTGGACCCTTCTACCGTTTTGAAGAGGAACCGGGTCGACCCGGTCGACCTTCCGACGCTTACGGTGAGAGAAAAGAAGGAATTGGCGTCGTATGCCAACAGCTTGGGGAAGAAGCTCAAGTCCCAGTTGGTGGGCAAGTCTGGTGTTACGGCCAATGTGGCTGCTTCTTTTGTAGAGAATCTTGAATCTAATGAGCTTCTCAAGGTTAAAATACATGGGACATGTCCAGAGGAGCTAGATGATACGGTGAAGCAATTGGAGGCTGCAACTGGTTCAGTTGTTGTCGGTCGGATTGGTAGAACAGTGATTCTTTACAGGCCAAGTCTCACCAAGCTGAAAGCTGAGGAGAAAAAAGAGCAGATGCGGAAGATTTTTTTGAAGCGAAAGCAGAGATATTCACGACCATCATCTATGGAATTTCAGAAAAAAGGAAGACCGAGGATGTTTGTGCGTGACAGCCGTGGAAGACCCAAGGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010941 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0031348 GO:0033612 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0060548 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

290

Amino Acids

32.08

Weight (kDa)

9.42

Isoelectric Point (pI)

37.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRS1_YhbY	PF01985	151 - 237	3e-19	CRS1 / YhbY (CRM) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003453)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04660 FvH4_2g17431
malus_domestica	MD05G1153200.v1.1 MD10G1147500.v1.1
prunus_persica	Prupe.8G186300_v2.0.a1 Prupe.8G186400_v2.0.a1 Prupe.8G186500_v2.0.a1 Prupe.8G186600_v2.0.a1
pyrus_communis	pycom05g14760 pycom10g12710 pycom10g12740
rosa_chinensis	RchiOBHm_Chr6g0281591 RchiOBHm_Chr6g0281611 RchiOBHm_Chr6g0282141
rosa_laevigata	RLG00000012906 RLG00000012907 RLG00000012959
rosa_multiflora	Rmu_sc0006897.1_g000004
rosa_roxburghii	Rroxscaffold_7G00186470
rosa_rugosa	Rorug06G0142000 Rorug06G0145600 Rorug06G0170000
rosa_samantha	Rh6AG047800 Rh6AG254400 Rh6AG258700 Rh6BG044300 Rh6BG257600 Rh6BG262000 Rh6BG262200 Rh6CG256700 Rh6CG261000 Rh6DG248500 Rh6DG248600 Rh6DG253000
rosa_wichuraiana	Rw6G022090 Rw6G022390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	523
AccI	GTMKAC	2 cut(s)	429, 438
AciI	CCGC	6 cut(s)	5, 26, 55, 114, 207, 757
AcoI	YGGCCR	1 cut(s)	543
AcsI	RAATTY	2 cut(s)	391, 809
AcuI	CTGAAG	1 cut(s)	372
AcyI	GRCGYC	2 cut(s)	142, 479
AfiI	CCNNNNNNNGG	1 cut(s)	523
AflIII	ACRYGT	1 cut(s)	614
AgsI	TTSAA	3 cut(s)	415, 578, 772
AhdI	GACNNNNNGTC	1 cut(s)	866
AluBI	AGCT	9 cut(s)	38, 263, 356, 495, 508, 589, 628, 727, 734
AluI	AGCT	9 cut(s)	38, 263, 356, 495, 508, 589, 628, 727, 734
Alw21I	GWGCWC	1 cut(s)	40
Alw26I	GTCTC	2 cut(s)	341, 722
AoxI	GGCC	2 cut(s)	543, 710
ApeKI	GCWGC	5 cut(s)	20, 23, 380, 554, 656
ApoI	RAATTY	2 cut(s)	391, 809
AspS9I	GGNCC	1 cut(s)	397
AsuC2I	CCSGG	3 cut(s)	46, 425, 434
AsuHPI	GGTGA	5 cut(s)	347, 356, 469, 652, 712
AvaII	GGWCC	1 cut(s)	397
BaeI	ACNNNNGTAYC	2 cut(s)	102, 135
BanII	GRGCYC	1 cut(s)	40
BbsI	GAAGAC	2 cut(s)	832, 865
Bbv12I	GWGCWC	1 cut(s)	40
BbvCI	CCTCAGC	1 cut(s)	735
BbvI	GCAGC	5 cut(s)	32, 35, 367, 541, 643
BccI	CCATC	2 cut(s)	218, 805
BceAI	ACGGC	3 cut(s)	101, 558, 837
BciVI	GTATCC	2 cut(s)	130, 361
BcnI	CCSGG	3 cut(s)	46, 425, 434
BcoDI	GTCTC	2 cut(s)	341, 722
BfaI	CTAG	3 cut(s)	320, 629, 871
BfuI	GTATCC	2 cut(s)	130, 361
BglI	GCCNNNNNGGC	1 cut(s)	551
BisI	GCNGC	6 cut(s)	6, 21, 24, 381, 555, 657
BlsI	GCNGC	6 cut(s)	7, 22, 25, 382, 556, 658
Bme1390I	CCNGG	3 cut(s)	46, 425, 434
Bme18I	GGWCC	1 cut(s)	397
BmeRI	GACNNNNNGTC	1 cut(s)	866
BmgT120I	GGNCC	1 cut(s)	397
BmiI	GGNNCC	3 cut(s)	50, 399, 422
BmrFI	CCNGG	3 cut(s)	46, 425, 434
BmrI	ACTGGG	1 cut(s)	511
BmsI	GCATC	1 cut(s)	744
BmuI	ACTGGG	1 cut(s)	511
BpiI	GAAGAC	2 cut(s)	832, 865
Bpu10I	CCTNAGC	1 cut(s)	735
BpuEI	CTTGAG	2 cut(s)	494, 578
BpuMI	CCSGG	3 cut(s)	46, 425, 434
BsaHI	GRCGYC	2 cut(s)	142, 479
BsaJI	CCNNGG	3 cut(s)	830, 853, 864
Bsc4I	CCNNNNNNNGG	1 cut(s)	523
Bse1I	ACTGG	2 cut(s)	517, 667
BseDI	CCNNGG	3 cut(s)	830, 853, 864
BseGI	GGATG	2 cut(s)	174, 840
BseLI	CCNNNNNNNGG	1 cut(s)	523
BseMII	CTCAG	2 cut(s)	255, 726
BseNI	ACTGG	2 cut(s)	517, 667
BseRI	GAGGAG	3 cut(s)	50, 638, 752
BseXI	GCAGC	5 cut(s)	32, 35, 367, 541, 643
BseYI	CCCAGC	1 cut(s)	356
Bsh1285I	CGRYCG	2 cut(s)	438, 682
BshFI	GGCC	2 cut(s)	545, 712
BsiEI	CGRYCG	2 cut(s)	438, 682
BsiHKAI	GWGCWC	1 cut(s)	40
BsiSI	CCGG	3 cut(s)	46, 424, 434
BslFI	GGGAC	2 cut(s)	499, 625
BslI	CCNNNNNNNGG	1 cut(s)	523
BsmAI	GTCTC	2 cut(s)	341, 722
BsmFI	GGGAC	2 cut(s)	499, 625
BsnI	GGCC	2 cut(s)	545, 712
Bsp1286I	GDGCHC	1 cut(s)	40
BspACI	CCGC	6 cut(s)	5, 26, 55, 114, 207, 757
BspANI	GGCC	2 cut(s)	545, 712
BspCNI	CTCAG	2 cut(s)	256, 727
BspLI	GGNNCC	3 cut(s)	50, 399, 422
BsrI	ACTGG	2 cut(s)	517, 667
BssECI	CCNNGG	3 cut(s)	830, 853, 864
BssNI	GRCGYC	2 cut(s)	142, 479
BssT1I	CCWWGG	1 cut(s)	864
Bst4CI	ACNGT	4 cut(s)	409, 457, 640, 697
Bst6I	CTCTTC	2 cut(s)	194, 410
BstACI	GRCGYC	2 cut(s)	142, 479
BstDEI	CTNAG	2 cut(s)	264, 735
BstDSI	CCRYGG	1 cut(s)	853
BstF5I	GGATG	2 cut(s)	174, 840
BstMAI	GTCTC	2 cut(s)	341, 722
BstMCI	CGRYCG	2 cut(s)	438, 682
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 20, 192, 215, 485, 551
BstNSI	RCATGY	1 cut(s)	618
BstSCI	CCNGG	3 cut(s)	44, 423, 432
BstV1I	GCAGC	5 cut(s)	32, 35, 367, 541, 643
BstV2I	GAAGAC	2 cut(s)	832, 865
BstXI	CCANNNNNNTGG	1 cut(s)	496
BsuI	GTATCC	2 cut(s)	130, 361
BsuRI	GGCC	2 cut(s)	545, 712
BtgI	CCRYGG	1 cut(s)	853
BtsCI	GGATG	2 cut(s)	174, 840
BtsIMutI	CAGTG	1 cut(s)	702
Cfr13I	GGNCC	1 cut(s)	397
CseI	GACGC	4 cut(s)	150, 386, 457, 468
CviAII	CATG	2 cut(s)	608, 615
DdeI	CTNAG	2 cut(s)	264, 735
DriI	GACNNNNNGTC	1 cut(s)	866
EaeI	YGGCCR	1 cut(s)	543
Eam1104I	CTCTTC	2 cut(s)	194, 410
Eam1105I	GACNNNNNGTC	1 cut(s)	866
EarI	CTCTTC	2 cut(s)	194, 410
Ecl136II	GAGCTC	1 cut(s)	38
Eco130I	CCWWGG	1 cut(s)	864
Eco24I	GRGCYC	1 cut(s)	40
Eco47I	GGWCC	1 cut(s)	397
Eco53kI	GAGCTC	1 cut(s)	38
Eco57I	CTGAAG	1 cut(s)	372
EcoICRI	GAGCTC	1 cut(s)	38
EcoT14I	CCWWGG	1 cut(s)	864
EcoT38I	GRGCYC	1 cut(s)	40
ErhI	CCWWGG	1 cut(s)	864
FaeI	CATG	2 cut(s)	611, 618
FaiI	YATR	4 cut(s)	486, 609, 616, 806
FaqI	GGGAC	2 cut(s)	499, 625
FatI	CATG	2 cut(s)	607, 614
FauI	CCCGC	1 cut(s)	214
FblI	GTMKAC	2 cut(s)	429, 438
Fnu4HI	GCNGC	6 cut(s)	6, 21, 24, 381, 555, 657
FokI	GGATG	2 cut(s)	161, 847
FriOI	GRGCYC	1 cut(s)	40
Fsp4HI	GCNGC	6 cut(s)	6, 21, 24, 381, 555, 657
FspBI	CTAG	3 cut(s)	320, 629, 871
GluI	GCNGC	6 cut(s)	6, 21, 24, 381, 555, 657
GsaI	CCCAGC	1 cut(s)	360
HaeIII	GGCC	2 cut(s)	545, 712
HapII	CCGG	3 cut(s)	46, 424, 434
HgaI	GACGC	4 cut(s)	150, 386, 457, 468
Hin1I	GRCGYC	2 cut(s)	142, 479
Hin1II	CATG	2 cut(s)	611, 618
HincII	GTYRAC	2 cut(s)	430, 439
HindII	GTYRAC	2 cut(s)	430, 439
HinfI	GANTC	4 cut(s)	287, 571, 578, 700
HpaII	CCGG	3 cut(s)	46, 424, 434
HphI	GGTGA	5 cut(s)	347, 356, 469, 652, 712
Hpy166II	GTNNAC	2 cut(s)	430, 439
Hpy188I	TCNGA	4 cut(s)	314, 447, 684, 816
Hpy188III	TCNNGA	4 cut(s)	320, 575, 620, 792
Hpy8I	GTNNAC	2 cut(s)	430, 439
Hpy99I	CGWCG	4 cut(s)	144, 380, 451, 484
HpyAV	CCTTC	6 cut(s)	107, 212, 335, 411, 452, 463
HpyCH4III	ACNGT	4 cut(s)	409, 457, 640, 697
HpyCH4V	TGCA	2 cut(s)	226, 659
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 20, 192, 215, 485, 551
HpyF3I	CTNAG	2 cut(s)	264, 735
Hsp92I	GRCGYC	2 cut(s)	142, 479
Hsp92II	CATG	2 cut(s)	611, 618
LmnI	GCTCC	4 cut(s)	35, 43, 54, 625
LpnPI	CCDG	9 cut(s)	59, 342, 437, 447, 519, 530, 633, 648, 694
Lsp1109I	GCAGC	5 cut(s)	32, 35, 367, 541, 643
LweI	GCATC	1 cut(s)	744
MaeI	CTAG	3 cut(s)	320, 629, 871
MaeIII	GTNAC	2 cut(s)	538, 845
MfeI	CAATTG	1 cut(s)	647
MhlI	GDGCHC	1 cut(s)	40
MluCI	AATT	5 cut(s)	362, 391, 473, 647, 809
MmeI	TCCRAC	4 cut(s)	13, 65, 470, 662
MseI	TTAA	1 cut(s)	600
MspA1I	CMGCKG	1 cut(s)	26
MspI	CCGG	3 cut(s)	46, 424, 434
MspR9I	CCNGG	3 cut(s)	46, 425, 434
MunI	CAATTG	1 cut(s)	647
MwoI	GCNNNNNNNGC	6 cut(s)	11, 20, 192, 215, 485, 551
NciI	CCSGG	3 cut(s)	46, 425, 434
NlaIII	CATG	2 cut(s)	611, 618
NlaIV	GGNNCC	3 cut(s)	50, 399, 422
NmuCI	GTSAC	1 cut(s)	845
NspI	RCATGY	1 cut(s)	618
PciI	ACATGT	1 cut(s)	614
PcsI	WCGNNNNNNNCGW	1 cut(s)	435
PfeI	GAWTC	4 cut(s)	287, 571, 578, 700
PflFI	GACNNNGTC	1 cut(s)	434
PflMI	CCANNNNNTGG	1 cut(s)	523
PkrI	GCNGC	6 cut(s)	7, 22, 25, 382, 556, 658
PscI	ACATGT	1 cut(s)	614
Psp124BI	GAGCTC	1 cut(s)	40
PspFI	CCCAGC	1 cut(s)	356
PspN4I	GGNNCC	3 cut(s)	50, 399, 422
PspPI	GGNCC	1 cut(s)	397
PsyI	GACNNNGTC	1 cut(s)	434
SacI	GAGCTC	1 cut(s)	40
SalI	GTCGAC	2 cut(s)	428, 437
SaqAI	TTAA	1 cut(s)	600
SatI	GCNGC	6 cut(s)	6, 21, 24, 381, 555, 657
Sau96I	GGNCC	1 cut(s)	397
ScrFI	CCNGG	3 cut(s)	46, 425, 434
SduI	GDGCHC	1 cut(s)	40
SfaNI	GCATC	1 cut(s)	744
SinI	GGWCC	1 cut(s)	397
SmlI	CTYRAG	2 cut(s)	509, 593
SmoI	CTYRAG	2 cut(s)	509, 593
Sse9I	AATT	5 cut(s)	362, 391, 473, 647, 809
SsiI	CCGC	6 cut(s)	5, 26, 55, 114, 207, 757
SspMI	CTAG	3 cut(s)	320, 629, 871
SstI	GAGCTC	1 cut(s)	40
StyD4I	CCNGG	3 cut(s)	44, 423, 432
StyI	CCWWGG	1 cut(s)	864
TaaI	ACNGT	4 cut(s)	409, 457, 640, 697
TaqI	TCGA	3 cut(s)	252, 429, 438
TaqII	GACCGA	2 cut(s)	668, 844
TasI	AATT	5 cut(s)	362, 391, 473, 647, 809
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	4 cut(s)	287, 571, 578, 700
Tru1I	TTAA	1 cut(s)	600
Tru9I	TTAA	1 cut(s)	600
TscAI	CASTG	1 cut(s)	702
TseFI	GTSAC	1 cut(s)	845
TseI	GCWGC	5 cut(s)	20, 23, 380, 554, 656
Tsp45I	GTSAC	1 cut(s)	845
TspDTI	ATGAA	4 cut(s)	163, 285, 342, 404
TspRI	CASTG	1 cut(s)	702
Tth111I	GACNNNGTC	1 cut(s)	434
Van91I	CCANNNNNTGG	1 cut(s)	523
VpaK11BI	GGWCC	1 cut(s)	397
XapI	RAATTY	2 cut(s)	391, 809
XbaI	TCTAGA	1 cut(s)	319
XceI	RCATGY	1 cut(s)	618
XmiI	GTMKAC	2 cut(s)	429, 438
XspI	CTAG	3 cut(s)	320, 629, 871

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.