Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003453

Physical Location & Seq

Genomic Coordinates Reverse (-)

18394148 .. 18395038

Gene Structure 891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G186600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGTTTGTTAGCAGTGTCCTCTGGTTGTTGCTGCTTAGTTGTAGCTTCAGCTTTGGCGTTGAGAGCGATATCAACTGCTTGAAAAGTATAAAAGCATCACTTGAGGACACTTTAGGTTACTTAAACTCTTCATGGGATTTCAACAACAACACTGAAGGCTTCATCTGCAACTTTCTCGGGATCGAGTGTTGGCACCCTCACGAGAGCAAGGTTCTGAACATCAAGCTTTCGGAGTTGGGACTAAAAGGTCAGTTCCCTCGGGGCGTAGAAAATTGTACAAGCTTAACAGGTTTAGATCTTTCAGGCAACATGCTCAGTGGACCTCTTCCTCATGATATCGATAAAATTCTTACGTGGGTTACGTCTCTTGATCTCTCTTCCAACAGCTTCTCAGGGCTGATCCCCGCGACACTTTCCAATTGCAGCTATATGAATGTGCTCAAGCTTGATAACAACCAGTTCTCGGGTAACATTCCGGCAGAAGTTAACCAGCTAACTAGGCTTAAAACTTTTAGTGTGGCCAACAATCTTCTGTCGGGCCAAGTGCCACCATTCGGTGAGAATATTGCTTCAATTAGAAGGGACAGTTATGCCAACAATCCTGGACTTTGTGGATACCCCCTCAAGCCTTGCCCATCAATATCTCAAAAGAAGTCCTTGAATGTGGTTAGGGTGTTCAAGTCGAATGGTGTAACTATGGTGACAGCAGCTGGTTTTGATGAGCTCCAACAGCCTCGTGTGTGCCTTATTTGGTCATGTACTCGAACACAGTTAAATAAGACACCCGCGGGATTGTCGTTGCAAATAATACATACAAAGTTGGATGAATTAGCATTATTTTTAGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

283

Amino Acids

30.91

Weight (kDa)

6.42

Isoelectric Point (pI)

37.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003453)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04660 FvH4_2g17431
malus_domestica	MD05G1153200.v1.1 MD10G1147500.v1.1
prunus_persica	Prupe.8G186300_v2.0.a1 Prupe.8G186400_v2.0.a1 Prupe.8G186500_v2.0.a1 Prupe.8G186600_v2.0.a1
pyrus_communis	pycom05g14760 pycom10g12710 pycom10g12740
rosa_chinensis	RchiOBHm_Chr6g0281591 RchiOBHm_Chr6g0281611 RchiOBHm_Chr6g0282141
rosa_laevigata	RLG00000012906 RLG00000012907 RLG00000012959
rosa_multiflora	Rmu_sc0006897.1_g000004
rosa_roxburghii	Rroxscaffold_7G00186470
rosa_rugosa	Rorug06G0142000 Rorug06G0145600 Rorug06G0170000
rosa_samantha	Rh6AG047800 Rh6AG254400 Rh6AG258700 Rh6BG044300 Rh6BG257600 Rh6BG262000 Rh6BG262200 Rh6CG256700 Rh6CG261000 Rh6DG248500 Rh6DG248600 Rh6DG253000
rosa_wichuraiana	Rw6G022090 Rw6G022390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	246
AccB1I	GGYRCC	1 cut(s)	192
AccII	CGCG	2 cut(s)	407, 788
AciI	CCGC	3 cut(s)	405, 786, 788
AclWI	GGATC	2 cut(s)	188, 394
AcoI	YGGCCR	1 cut(s)	519
AcsI	RAATTY	1 cut(s)	345
AcuI	CTGAAG	2 cut(s)	31, 174
AfaI	GTAC	2 cut(s)	277, 760
AfiI	CCNNNNNNNGG	2 cut(s)	463, 554
AgsI	TTSAA	5 cut(s)	82, 142, 573, 661, 679
AjnI	CCWGG	1 cut(s)	601
Alw21I	GWGCWC	2 cut(s)	441, 726
Alw26I	GTCTC	1 cut(s)	369
AlwI	GGATC	2 cut(s)	188, 394
AlwNI	CAGNNNCTG	1 cut(s)	710
Ama87I	CYCGRG	3 cut(s)	176, 258, 463
AoxI	GGCC	2 cut(s)	519, 538
ApeKI	GCWGC	3 cut(s)	31, 423, 707
ApoI	RAATTY	1 cut(s)	345
AspS9I	GGNCC	2 cut(s)	320, 538
AsuHPI	GGTGA	2 cut(s)	569, 712
AvaI	CYCGRG	3 cut(s)	176, 258, 463
AvaII	GGWCC	1 cut(s)	320
BalI	TGGCCA	1 cut(s)	521
BanI	GGYRCC	1 cut(s)	192
BanII	GRGCYC	1 cut(s)	726
BauI	CACGAG	2 cut(s)	200, 735
Bbv12I	GWGCWC	2 cut(s)	441, 726
BbvI	GCAGC	3 cut(s)	18, 435, 719
BccI	CCATC	1 cut(s)	643
BcgI	CGANNNNNNTGC	2 cut(s)	157, 191
BciT130I	CCWGG	1 cut(s)	603
BciVI	GTATCC	1 cut(s)	608
BcoDI	GTCTC	1 cut(s)	369
BfaI	CTAG	1 cut(s)	498
BfuI	GTATCC	1 cut(s)	608
BglII	AGATCT	1 cut(s)	295
BisI	GCNGC	3 cut(s)	32, 424, 708
BlsI	GCNGC	3 cut(s)	33, 425, 709
Bme1390I	CCNGG	1 cut(s)	603
Bme18I	GGWCC	1 cut(s)	320
BmeT110I	CYCGRG	3 cut(s)	176, 258, 463
BmgT120I	GGNCC	2 cut(s)	320, 538
BmiI	GGNNCC	1 cut(s)	194
BmrFI	CCNGG	1 cut(s)	603
BmsI	GCATC	1 cut(s)	104
BpuEI	CTTGAG	3 cut(s)	122, 425, 608
Bsa29I	ATCGAT	1 cut(s)	339
BsaAI	YACGTR	1 cut(s)	354
BsaJI	CCNNGG	2 cut(s)	257, 786
Bsc4I	CCNNNNNNNGG	2 cut(s)	463, 554
Bse1I	ACTGG	1 cut(s)	457
BseBI	CCWGG	1 cut(s)	603
BseCI	ATCGAT	1 cut(s)	339
BseDI	CCNNGG	2 cut(s)	257, 786
BseGI	GGATG	1 cut(s)	829
BseLI	CCNNNNNNNGG	2 cut(s)	463, 554
BseMII	CTCAG	2 cut(s)	328, 405
BseNI	ACTGG	1 cut(s)	457
BseXI	GCAGC	3 cut(s)	18, 435, 719
Bsh1236I	CGCG	2 cut(s)	407, 788
BshFI	GGCC	2 cut(s)	521, 540
BshNI	GGYRCC	1 cut(s)	192
BshVI	ATCGAT	1 cut(s)	339
BsiHKAI	GWGCWC	2 cut(s)	441, 726
BsiHKCI	CYCGRG	3 cut(s)	176, 258, 463
BsiSI	CCGG	1 cut(s)	476
BslFI	GGGAC	2 cut(s)	252, 596
BslI	CCNNNNNNNGG	2 cut(s)	463, 554
BsmAI	GTCTC	1 cut(s)	369
BsmBI	CGTCTC	1 cut(s)	369
BsmFI	GGGAC	2 cut(s)	252, 596
BsnI	GGCC	2 cut(s)	521, 540
BsoBI	CYCGRG	3 cut(s)	176, 258, 463
Bsp1286I	GDGCHC	2 cut(s)	441, 726
Bsp1407I	TGTACA	1 cut(s)	275
Bsp143I	GATC	4 cut(s)	180, 295, 370, 399
BspACI	CCGC	3 cut(s)	405, 786, 788
BspANI	GGCC	2 cut(s)	521, 540
BspCNI	CTCAG	2 cut(s)	327, 404
BspDI	ATCGAT	1 cut(s)	339
BspFNI	CGCG	2 cut(s)	407, 788
BspHI	TCATGA	1 cut(s)	331
BspLI	GGNNCC	1 cut(s)	194
BspPI	GGATC	2 cut(s)	188, 394
BspT107I	GGYRCC	1 cut(s)	192
BsrGI	TGTACA	1 cut(s)	275
BsrI	ACTGG	1 cut(s)	457
BssECI	CCNNGG	2 cut(s)	257, 786
BssMI	GATC	4 cut(s)	180, 295, 370, 399
BssSI	CACGAG	2 cut(s)	200, 735
Bst2BI	CACGAG	2 cut(s)	200, 735
Bst2UI	CCWGG	1 cut(s)	603
Bst4CI	ACNGT	2 cut(s)	587, 771
Bst6I	CTCTTC	3 cut(s)	133, 330, 382
BstAUI	TGTACA	1 cut(s)	275
BstBAI	YACGTR	1 cut(s)	354
BstDEI	CTNAG	3 cut(s)	35, 314, 391
BstDSI	CCRYGG	1 cut(s)	786
BstF5I	GGATG	1 cut(s)	829
BstFNI	CGCG	2 cut(s)	407, 788
BstKTI	GATC	4 cut(s)	183, 298, 373, 402
BstMAI	GTCTC	1 cut(s)	369
BstMBI	GATC	4 cut(s)	180, 295, 370, 399
BstMWI	GCNNNNNNNGC	4 cut(s)	63, 165, 499, 730
BstNI	CCWGG	1 cut(s)	603
BstNSI	RCATGY	1 cut(s)	313
BstSCI	CCNGG	1 cut(s)	601
BstUI	CGCG	2 cut(s)	407, 788
BstV1I	GCAGC	3 cut(s)	18, 435, 719
BstX2I	RGATCY	1 cut(s)	295
BstYI	RGATCY	1 cut(s)	295
Bsu15I	ATCGAT	1 cut(s)	339
BsuI	GTATCC	1 cut(s)	608
BsuRI	GGCC	2 cut(s)	521, 540
BsuTUI	ATCGAT	1 cut(s)	339
BtgI	CCRYGG	1 cut(s)	786
BtsCI	GGATG	1 cut(s)	829
BtsI	GCAGTG	1 cut(s)	19
BtsIMutI	CAGTG	3 cut(s)	19, 150, 322
CaiI	CAGNNNCTG	1 cut(s)	710
CciI	TCATGA	1 cut(s)	331
Cfr13I	GGNCC	2 cut(s)	320, 538
Cfr42I	CCGCGG	1 cut(s)	789
ClaI	ATCGAT	1 cut(s)	339
Csp6I	GTAC	2 cut(s)	276, 759
CviAII	CATG	4 cut(s)	132, 310, 332, 756
CviQI	GTAC	2 cut(s)	276, 759
DdeI	CTNAG	3 cut(s)	35, 314, 391
DpnI	GATC	4 cut(s)	182, 297, 372, 401
DpnII	GATC	4 cut(s)	180, 295, 370, 399
DrdI	GACNNNNNNGTC	1 cut(s)	246
DseDI	GACNNNNNNGTC	1 cut(s)	246
EaeI	YGGCCR	1 cut(s)	519
Eam1104I	CTCTTC	3 cut(s)	133, 330, 382
EarI	CTCTTC	3 cut(s)	133, 330, 382
Ecl136II	GAGCTC	1 cut(s)	724
Eco24I	GRGCYC	1 cut(s)	726
Eco32I	GATATC	2 cut(s)	70, 337
Eco47I	GGWCC	1 cut(s)	320
Eco53kI	GAGCTC	1 cut(s)	724
Eco57I	CTGAAG	2 cut(s)	31, 174
Eco88I	CYCGRG	3 cut(s)	176, 258, 463
EcoICRI	GAGCTC	1 cut(s)	724
EcoRII	CCWGG	1 cut(s)	601
EcoRV	GATATC	2 cut(s)	70, 337
EcoT38I	GRGCYC	1 cut(s)	726
Esp3I	CGTCTC	1 cut(s)	369
FaeI	CATG	4 cut(s)	135, 313, 335, 759
FalI	AAGNNNNNCTT	4 cut(s)	84, 116, 641, 673
FaqI	GGGAC	2 cut(s)	252, 596
FatI	CATG	4 cut(s)	131, 309, 331, 755
FauI	CCCGC	3 cut(s)	412, 781, 793
Fnu4HI	GCNGC	3 cut(s)	32, 424, 708
FokI	GGATG	1 cut(s)	836
FriOI	GRGCYC	1 cut(s)	726
Fsp4HI	GCNGC	3 cut(s)	32, 424, 708
FspBI	CTAG	1 cut(s)	498
GluI	GCNGC	3 cut(s)	32, 424, 708
HaeIII	GGCC	2 cut(s)	521, 540
HapII	CCGG	1 cut(s)	476
Hin1II	CATG	4 cut(s)	135, 313, 335, 759
HincII	GTYRAC	1 cut(s)	487
HindII	GTYRAC	1 cut(s)	487
HindIII	AAGCTT	3 cut(s)	224, 280, 443
HpaI	GTTAAC	1 cut(s)	487
HpaII	CCGG	1 cut(s)	476
HphI	GGTGA	2 cut(s)	569, 712
Hpy166II	GTNNAC	2 cut(s)	320, 487
Hpy188I	TCNGA	2 cut(s)	216, 232
Hpy188III	TCNNGA	4 cut(s)	178, 200, 332, 368
Hpy8I	GTNNAC	2 cut(s)	320, 487
HpyAV	CCTTC	2 cut(s)	149, 573
HpyCH4III	ACNGT	2 cut(s)	587, 771
HpyCH4IV	ACGT	2 cut(s)	353, 362
HpyCH4V	TGCA	3 cut(s)	168, 423, 802
HpyF10VI	GCNNNNNNNGC	4 cut(s)	63, 165, 499, 730
HpyF3I	CTNAG	3 cut(s)	35, 314, 391
HpySE526I	ACGT	2 cut(s)	353, 362
Hsp92II	CATG	4 cut(s)	135, 313, 335, 759
KspAI	GTTAAC	1 cut(s)	487
KspI	CCGCGG	1 cut(s)	789
Kzo9I	GATC	4 cut(s)	180, 295, 370, 399
LmnI	GCTCC	1 cut(s)	729
Lsp1109I	GCAGC	3 cut(s)	18, 435, 719
LweI	GCATC	1 cut(s)	104
MaeI	CTAG	1 cut(s)	498
MaeII	ACGT	2 cut(s)	353, 362
MaeIII	GTNAC	5 cut(s)	116, 358, 467, 691, 700
MalI	GATC	4 cut(s)	182, 297, 372, 401
MboI	GATC	4 cut(s)	180, 295, 370, 399
MboII	GAAGA	4 cut(s)	120, 317, 369, 521
MfeI	CAATTG	1 cut(s)	418
MflI	RGATCY	1 cut(s)	295
MhlI	GDGCHC	2 cut(s)	441, 726
MlsI	TGGCCA	1 cut(s)	521
MluCI	AATT	5 cut(s)	271, 345, 418, 573, 827
MluNI	TGGCCA	1 cut(s)	521
MmeI	TCCRAC	3 cut(s)	405, 751, 801
MnlI	CCTC	8 cut(s)	29, 97, 207, 267, 333, 339, 632, 744
Mox20I	TGGCCA	1 cut(s)	521
MscI	TGGCCA	1 cut(s)	521
MseI	TTAA	5 cut(s)	122, 284, 486, 504, 773
Msp20I	TGGCCA	1 cut(s)	521
MspA1I	CMGCKG	2 cut(s)	710, 788
MspI	CCGG	1 cut(s)	476
MspR9I	CCNGG	1 cut(s)	603
MunI	CAATTG	1 cut(s)	418
MvaI	CCWGG	1 cut(s)	603
MvnI	CGCG	2 cut(s)	407, 788
MwoI	GCNNNNNNNGC	4 cut(s)	63, 165, 499, 730
NdeII	GATC	4 cut(s)	180, 295, 370, 399
NlaIII	CATG	4 cut(s)	135, 313, 335, 759
NlaIV	GGNNCC	1 cut(s)	194
NmuCI	GTSAC	1 cut(s)	700
NspI	RCATGY	1 cut(s)	313
PagI	TCATGA	1 cut(s)	331
PcsI	WCGNNNNNNNCGW	1 cut(s)	359
PfoI	TCCNGGA	1 cut(s)	601
PkrI	GCNGC	3 cut(s)	33, 425, 709
Ppu21I	YACGTR	1 cut(s)	354
Psp124BI	GAGCTC	1 cut(s)	726
Psp6I	CCWGG	1 cut(s)	601
PspGI	CCWGG	1 cut(s)	601
PspN4I	GGNNCC	1 cut(s)	194
PspPI	GGNCC	2 cut(s)	320, 538
PstNI	CAGNNNCTG	1 cut(s)	710
PsuI	RGATCY	1 cut(s)	295
PvuII	CAGCTG	1 cut(s)	710
RsaI	GTAC	2 cut(s)	277, 760
RsaNI	GTAC	2 cut(s)	276, 759
SacI	GAGCTC	1 cut(s)	726
SacII	CCGCGG	1 cut(s)	789
SaqAI	TTAA	5 cut(s)	122, 284, 486, 504, 773
SatI	GCNGC	3 cut(s)	32, 424, 708
Sau3AI	GATC	4 cut(s)	180, 295, 370, 399
Sau96I	GGNCC	2 cut(s)	320, 538
ScrFI	CCNGG	1 cut(s)	603
SduI	GDGCHC	2 cut(s)	441, 726
SfaNI	GCATC	1 cut(s)	104
Sfr303I	CCGCGG	1 cut(s)	789
SgrBI	CCGCGG	1 cut(s)	789
SinI	GGWCC	1 cut(s)	320
SmlI	CTYRAG	3 cut(s)	101, 440, 623
SmoI	CTYRAG	3 cut(s)	101, 440, 623
Sse9I	AATT	5 cut(s)	271, 345, 418, 573, 827
SsiI	CCGC	3 cut(s)	405, 786, 788
SspI	AATATT	1 cut(s)	565
SspMI	CTAG	1 cut(s)	498
SstI	GAGCTC	1 cut(s)	726
StyD4I	CCNGG	1 cut(s)	601
TaaI	ACNGT	2 cut(s)	587, 771
TaiI	ACGT	2 cut(s)	356, 365
TaqI	TCGA	4 cut(s)	183, 339, 683, 763
TasI	AATT	5 cut(s)	271, 345, 418, 573, 827
TatI	WGTACW	2 cut(s)	275, 758
Tru1I	TTAA	5 cut(s)	122, 284, 486, 504, 773
Tru9I	TTAA	5 cut(s)	122, 284, 486, 504, 773
TscAI	CASTG	3 cut(s)	19, 157, 322
TseFI	GTSAC	1 cut(s)	700
TseI	GCWGC	3 cut(s)	31, 423, 707
Tsp45I	GTSAC	1 cut(s)	700
TspDTI	ATGAA	4 cut(s)	120, 151, 446, 840
TspRI	CASTG	3 cut(s)	19, 157, 322
VpaK11BI	GGWCC	1 cut(s)	320
XapI	RAATTY	1 cut(s)	345
XceI	RCATGY	1 cut(s)	313
XspI	CTAG	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.