Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002264

Physical Location & Seq

Genomic Coordinates Forward (+)

3662163 .. 3662887

Gene Structure 725 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g04712.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGAATATTCGGATGATCTGCAACCAGGTGCTCCATAAGTCTCCTGGTATGCTTTTTGTTTCACAGTTCGTGAAGAAAATTATCGGCTACTTTCACGCAGCCAGCTCGACTGGCCAGCACCAGAAGCAGGCTCAGCCGGCGAAGCTCCATGATCCTCGACCGGGAGAACTCGAGGAGACTCTCATCGATACTGTTTTACTGAGATCAATATCAAACCTTTATTTTAGTACTACCTTAACAATGGAAGTGCAAACAGGTAGCAAGGTAGAACAAGACCGCTTTGTGATGATGCCCCATACAAAAATGAGGCTGGCCACAAGGAAGAACGTTACGAGGAACTCCTTTGTTGTTATATTTGTGATAGTGTTGGTGAGCACCGGACAAAAGAATGCCCTGACAACGATTGCGACTATGATCCTCCCAACGGCTGGGACCTTACAGAGAATAGACAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

152

Amino Acids

17.0

Weight (kDa)

10.23

Isoelectric Point (pI)

33.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002264)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04712 FvH4_2g40191 FvH4_2g40203 FvH4_2g40210 FvH4_2g40220 FvH4_3g18081
rosa_chinensis	RchiOBHm_Chr1g0378061 RchiOBHm_Chr5g0003061 RchiOBHm_Chr5g0030501
rosa_laevigata	RLG00000031096 RLG00000031106 RLG00000031109
rosa_multiflora	Rmu_sc0000280.1_g000001 Rmu_sc0015917.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019880 Rroxscaffold_1G00019910 Rroxscaffold_1G00049800 Rroxscaffold_1G00072540 Rroxscaffold_1G00073090
rosa_rugosa	Rorug04G0396300 Rorug04G0396400 Rorug04G0396500 Rorug04G0396600 Rorug04G0401800 Rorug05G0117400 Rorug05G0334100 Rorug05G0334100
rosa_samantha	Rh5AG028100 Rh5AG028200 Rh5AG210200 Rh5AG396800 Rh5AG396900 Rh5BG028300 Rh5BG209400 Rh5BG408900 Rh5BG409100 Rh5CG027500 Rh5CG030600 Rh5CG030700 Rh5CG433600 Rh5CG433800
rosa_wichuraiana	Rw5G002290 Rw5G019200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	428
AciI	CCGC	1 cut(s)	277
AclI	AACGTT	1 cut(s)	327
AclWI	GGATC	2 cut(s)	146, 409
AcoI	YGGCCR	2 cut(s)	112, 312
AfaI	GTAC	1 cut(s)	229
AfiI	CCNNNNNNNGG	4 cut(s)	127, 161, 424, 428
AjnI	CCWGG	2 cut(s)	24, 43
AluBI	AGCT	2 cut(s)	105, 145
AluI	AGCT	2 cut(s)	105, 145
Alw21I	GWGCWC	2 cut(s)	33, 377
Alw26I	GTCTC	2 cut(s)	45, 170
AlwI	GGATC	2 cut(s)	146, 409
Ama87I	CYCGRG	1 cut(s)	170
AoxI	GGCC	2 cut(s)	112, 312
ApeKI	GCWGC	1 cut(s)	98
AspS9I	GGNCC	1 cut(s)	432
AsuC2I	CCSGG	1 cut(s)	162
AsuHPI	GGTGA	1 cut(s)	382
AvaI	CYCGRG	1 cut(s)	170
AvaII	GGWCC	1 cut(s)	432
BalI	TGGCCA	2 cut(s)	114, 314
Bbv12I	GWGCWC	2 cut(s)	33, 377
BbvI	GCAGC	1 cut(s)	110
BceAI	ACGGC	1 cut(s)	441
BcgI	CGANNNNNNTGC	2 cut(s)	87, 121
BciT130I	CCWGG	2 cut(s)	26, 45
BcnI	CCSGG	1 cut(s)	162
BcoDI	GTCTC	2 cut(s)	45, 170
BisI	GCNGC	1 cut(s)	99
BlpI	GCTNAGC	1 cut(s)	132
BlsI	GCNGC	1 cut(s)	100
BmcAI	AGTACT	1 cut(s)	229
Bme1390I	CCNGG	3 cut(s)	26, 45, 162
Bme18I	GGWCC	1 cut(s)	432
BmeT110I	CYCGRG	1 cut(s)	170
BmgT120I	GGNCC	1 cut(s)	432
BmiI	GGNNCC	1 cut(s)	433
BmrFI	CCNGG	3 cut(s)	26, 45, 162
BmsI	GCATC	1 cut(s)	279
Bpu1102I	GCTNAGC	1 cut(s)	132
BpuMI	CCSGG	1 cut(s)	162
Bsa29I	ATCGAT	1 cut(s)	186
BsaBI	GATNNNNATC	1 cut(s)	208
BsaWI	WCCGGW	1 cut(s)	377
Bsc4I	CCNNNNNNNGG	4 cut(s)	127, 161, 424, 428
Bse118I	RCCGGY	1 cut(s)	136
Bse1I	ACTGG	1 cut(s)	115
Bse8I	GATNNNNATC	1 cut(s)	208
BseBI	CCWGG	2 cut(s)	26, 45
BseCI	ATCGAT	1 cut(s)	186
BseGI	GGATG	1 cut(s)	18
BseJI	GATNNNNATC	1 cut(s)	208
BseLI	CCNNNNNNNGG	4 cut(s)	127, 161, 424, 428
BseMII	CTCAG	2 cut(s)	146, 191
BseNI	ACTGG	1 cut(s)	115
BseRI	GAGGAG	1 cut(s)	188
BseXI	GCAGC	1 cut(s)	110
BseYI	CCCAGC	1 cut(s)	428
Bsh1285I	CGRYCG	1 cut(s)	161
BshFI	GGCC	2 cut(s)	114, 314
BshVI	ATCGAT	1 cut(s)	186
BsiEI	CGRYCG	1 cut(s)	161
BsiHKAI	GWGCWC	2 cut(s)	33, 377
BsiHKCI	CYCGRG	1 cut(s)	170
BsiSI	CCGG	3 cut(s)	137, 161, 378
BslFI	GGGAC	1 cut(s)	445
BslI	CCNNNNNNNGG	4 cut(s)	127, 161, 424, 428
BsmAI	GTCTC	2 cut(s)	45, 170
BsmFI	GGGAC	1 cut(s)	445
BsmI	GAATGC	1 cut(s)	394
BsnI	GGCC	2 cut(s)	114, 314
BsoBI	CYCGRG	1 cut(s)	170
Bsp1286I	GDGCHC	2 cut(s)	33, 377
Bsp143I	GATC	4 cut(s)	15, 151, 203, 414
Bsp1720I	GCTNAGC	1 cut(s)	132
BspACI	CCGC	1 cut(s)	277
BspANI	GGCC	2 cut(s)	114, 314
BspCNI	CTCAG	2 cut(s)	145, 192
BspDI	ATCGAT	1 cut(s)	186
BspLI	GGNNCC	1 cut(s)	433
BspPI	GGATC	2 cut(s)	146, 409
BsrFI	RCCGGY	1 cut(s)	136
BsrI	ACTGG	1 cut(s)	115
BssAI	RCCGGY	1 cut(s)	136
BssMI	GATC	4 cut(s)	15, 151, 203, 414
Bst2UI	CCWGG	2 cut(s)	26, 45
Bst4CI	ACNGT	2 cut(s)	66, 193
BstC8I	GCNNGC	5 cut(s)	103, 116, 129, 138, 312
BstDEI	CTNAG	2 cut(s)	132, 200
BstF5I	GGATG	1 cut(s)	18
BstKTI	GATC	4 cut(s)	18, 154, 206, 417
BstMAI	GTCTC	2 cut(s)	45, 170
BstMBI	GATC	4 cut(s)	15, 151, 203, 414
BstMCI	CGRYCG	1 cut(s)	161
BstMWI	GCNNNNNNNGC	5 cut(s)	111, 124, 133, 137, 142
BstNI	CCWGG	2 cut(s)	26, 45
BstSCI	CCNGG	3 cut(s)	24, 43, 160
BstV1I	GCAGC	1 cut(s)	110
Bsu15I	ATCGAT	1 cut(s)	186
BsuRI	GGCC	2 cut(s)	114, 314
BsuTUI	ATCGAT	1 cut(s)	186
BtsCI	GGATG	1 cut(s)	18
Cac8I	GCNNGC	5 cut(s)	103, 116, 129, 138, 312
Cfr10I	RCCGGY	1 cut(s)	136
Cfr13I	GGNCC	1 cut(s)	432
ClaI	ATCGAT	1 cut(s)	186
CsiI	ACCWGGT	1 cut(s)	24
Csp6I	GTAC	1 cut(s)	228
CviAII	CATG	1 cut(s)	149
CviQI	GTAC	1 cut(s)	228
DdeI	CTNAG	2 cut(s)	132, 200
DpnI	GATC	4 cut(s)	17, 153, 205, 416
DpnII	GATC	4 cut(s)	15, 151, 203, 414
EaeI	YGGCCR	2 cut(s)	112, 312
Eco47I	GGWCC	1 cut(s)	432
Eco88I	CYCGRG	1 cut(s)	170
EcoO109I	RGGNCCY	1 cut(s)	432
EcoRII	CCWGG	2 cut(s)	24, 43
FaeI	CATG	1 cut(s)	152
FaiI	YATR	6 cut(s)	36, 50, 150, 297, 353, 413
FaqI	GGGAC	1 cut(s)	445
FatI	CATG	1 cut(s)	148
Fnu4HI	GCNGC	1 cut(s)	99
FokI	GGATG	1 cut(s)	25
Fsp4HI	GCNGC	1 cut(s)	99
GluI	GCNGC	1 cut(s)	99
GsaI	CCCAGC	1 cut(s)	432
HaeIII	GGCC	2 cut(s)	114, 314
HapII	CCGG	3 cut(s)	137, 161, 378
Hin1II	CATG	1 cut(s)	152
HinfI	GANTC	1 cut(s)	178
HpaII	CCGG	3 cut(s)	137, 161, 378
HphI	GGTGA	1 cut(s)	382
Hpy188I	TCNGA	1 cut(s)	12
Hpy188III	TCNNGA	1 cut(s)	70
HpyCH4III	ACNGT	2 cut(s)	66, 193
HpyCH4IV	ACGT	1 cut(s)	327
HpyCH4V	TGCA	2 cut(s)	21, 250
HpyF10VI	GCNNNNNNNGC	5 cut(s)	111, 124, 133, 137, 142
HpyF3I	CTNAG	2 cut(s)	132, 200
HpySE526I	ACGT	1 cut(s)	327
Hsp92II	CATG	1 cut(s)	152
KroI	GCCGGC	1 cut(s)	136
KroNI	GCCGGC	1 cut(s)	138
Kzo9I	GATC	4 cut(s)	15, 151, 203, 414
LmnI	GCTCC	2 cut(s)	36, 150
Lsp1109I	GCAGC	1 cut(s)	110
LweI	GCATC	1 cut(s)	279
MabI	ACCWGGT	1 cut(s)	24
MaeII	ACGT	1 cut(s)	327
MaeIII	GTNAC	1 cut(s)	328
MalI	GATC	4 cut(s)	17, 153, 205, 416
MboI	GATC	4 cut(s)	15, 151, 203, 414
MboII	GAAGA	2 cut(s)	85, 334
MhlI	GDGCHC	2 cut(s)	33, 377
MlsI	TGGCCA	2 cut(s)	114, 314
MluCI	AATT	1 cut(s)	78
MluNI	TGGCCA	2 cut(s)	114, 314
MlyI	GAGTC	1 cut(s)	172
MnlI	CCTC	5 cut(s)	165, 166, 300, 327, 428
Mox20I	TGGCCA	2 cut(s)	114, 314
MroNI	GCCGGC	1 cut(s)	136
MscI	TGGCCA	2 cut(s)	114, 314
MseI	TTAA	1 cut(s)	236
Msp20I	TGGCCA	2 cut(s)	114, 314
MspI	CCGG	3 cut(s)	137, 161, 378
MspR9I	CCNGG	3 cut(s)	26, 45, 162
Mva1269I	GAATGC	1 cut(s)	394
MvaI	CCWGG	2 cut(s)	26, 45
MwoI	GCNNNNNNNGC	5 cut(s)	111, 124, 133, 137, 142
NaeI	GCCGGC	1 cut(s)	138
NciI	CCSGG	1 cut(s)	162
NdeII	GATC	4 cut(s)	15, 151, 203, 414
NgoMIV	GCCGGC	1 cut(s)	136
NlaIII	CATG	1 cut(s)	152
NlaIV	GGNNCC	1 cut(s)	433
PaeR7I	CTCGAG	1 cut(s)	170
PctI	GAATGC	1 cut(s)	394
PdiI	GCCGGC	1 cut(s)	138
PflMI	CCANNNNNTGG	1 cut(s)	428
PkrI	GCNGC	1 cut(s)	100
PleI	GAGTC	1 cut(s)	172
PpsI	GAGTC	1 cut(s)	172
PpuMI	RGGWCCY	1 cut(s)	432
Psp1406I	AACGTT	1 cut(s)	327
Psp5II	RGGWCCY	1 cut(s)	432
Psp6I	CCWGG	2 cut(s)	24, 43
PspFI	CCCAGC	1 cut(s)	428
PspGI	CCWGG	2 cut(s)	24, 43
PspN4I	GGNNCC	1 cut(s)	433
PspPI	GGNCC	1 cut(s)	432
PspPPI	RGGWCCY	1 cut(s)	432
PspXI	VCTCGAGB	1 cut(s)	170
RsaI	GTAC	1 cut(s)	229
RsaNI	GTAC	1 cut(s)	228
SaqAI	TTAA	1 cut(s)	236
SatI	GCNGC	1 cut(s)	99
Sau3AI	GATC	4 cut(s)	15, 151, 203, 414
Sau96I	GGNCC	1 cut(s)	432
ScaI	AGTACT	1 cut(s)	229
SchI	GAGTC	1 cut(s)	172
ScrFI	CCNGG	3 cut(s)	26, 45, 162
SduI	GDGCHC	2 cut(s)	33, 377
SetI	ASST	9 cut(s)	30, 107, 147, 219, 236, 259, 267, 330, 437
SexAI	ACCWGGT	1 cut(s)	24
SfaNI	GCATC	1 cut(s)	279
Sfr274I	CTCGAG	1 cut(s)	170
SinI	GGWCC	1 cut(s)	432
SlaI	CTCGAG	1 cut(s)	170
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
Sse9I	AATT	1 cut(s)	78
SsiI	CCGC	1 cut(s)	277
SspI	AATATT	1 cut(s)	7
StyD4I	CCNGG	3 cut(s)	24, 43, 160
TaaI	ACNGT	2 cut(s)	66, 193
TaiI	ACGT	1 cut(s)	330
TaqI	TCGA	4 cut(s)	107, 157, 171, 186
TasI	AATT	1 cut(s)	78
TatI	WGTACW	1 cut(s)	227
Tru1I	TTAA	1 cut(s)	236
Tru9I	TTAA	1 cut(s)	236
TseI	GCWGC	1 cut(s)	98
TspDTI	ATGAA	1 cut(s)	17
Van91I	CCANNNNNTGG	1 cut(s)	428
VpaK11BI	GGWCC	1 cut(s)	432
XcmI	CCANNNNNNNNNTGG	1 cut(s)	41
XhoI	CTCGAG	1 cut(s)	170
ZrmI	AGTACT	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.