No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g04712 FvH4_2g40191 FvH4_2g40203 FvH4_2g40210 FvH4_2g40220 FvH4_3g18081 |
| rosa_chinensis | RchiOBHm_Chr1g0378061 RchiOBHm_Chr5g0003061 RchiOBHm_Chr5g0030501 |
| rosa_laevigata | RLG00000031096 RLG00000031106 RLG00000031109 |
| rosa_multiflora | Rmu_sc0000280.1_g000001 Rmu_sc0015917.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00019880 Rroxscaffold_1G00019910 Rroxscaffold_1G00049800 Rroxscaffold_1G00072540 Rroxscaffold_1G00073090 |
| rosa_rugosa | Rorug04G0396300 Rorug04G0396400 Rorug04G0396500 Rorug04G0396600 Rorug04G0401800 Rorug05G0117400 Rorug05G0334100 Rorug05G0334100 |
| rosa_samantha | Rh5AG028100 Rh5AG028200 Rh5AG210200 Rh5AG396800 Rh5AG396900 Rh5BG028300 Rh5BG209400 Rh5BG408900 Rh5BG409100 Rh5CG027500 Rh5CG030600 Rh5CG030700 Rh5CG433600 Rh5CG433800 |
| rosa_wichuraiana | Rw5G002290 Rw5G019200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 60 |
| AclWI | GGATC | 2 cut(s) | 123, 149 |
| AcsI | RAATTY | 1 cut(s) | 79 |
| AdeI | CACNNNGTG | 1 cut(s) | 22 |
| AfaI | GTAC | 1 cut(s) | 5 |
| AjnI | CCWGG | 1 cut(s) | 131 |
| Alw21I | GWGCWC | 1 cut(s) | 18 |
| Alw44I | GTGCAC | 1 cut(s) | 14 |
| AlwI | GGATC | 2 cut(s) | 123, 149 |
| Aor13HI | TCCGGA | 1 cut(s) | 60 |
| ApaLI | GTGCAC | 1 cut(s) | 14 |
| ApoI | RAATTY | 1 cut(s) | 79 |
| AspS9I | GGNCC | 1 cut(s) | 135 |
| AvaII | GGWCC | 1 cut(s) | 135 |
| BaeGI | GKGCMC | 1 cut(s) | 18 |
| BauI | CACGAG | 1 cut(s) | 11 |
| Bbv12I | GWGCWC | 1 cut(s) | 18 |
| BciT130I | CCWGG | 1 cut(s) | 133 |
| Bme1390I | CCNGG | 1 cut(s) | 133 |
| Bme18I | GGWCC | 1 cut(s) | 135 |
| BmgT120I | GGNCC | 1 cut(s) | 135 |
| BmrFI | CCNGG | 1 cut(s) | 133 |
| BsaWI | WCCGGW | 3 cut(s) | 29, 60, 123 |
| BseAI | TCCGGA | 1 cut(s) | 60 |
| BseBI | CCWGG | 1 cut(s) | 133 |
| BseSI | GKGCMC | 1 cut(s) | 18 |
| BsiHKAI | GWGCWC | 1 cut(s) | 18 |
| BsiSI | CCGG | 4 cut(s) | 30, 61, 124, 147 |
| Bsp1286I | GDGCHC | 1 cut(s) | 18 |
| Bsp13I | TCCGGA | 1 cut(s) | 60 |
| Bsp1407I | TGTACA | 1 cut(s) | 3 |
| Bsp143I | GATC | 3 cut(s) | 72, 128, 154 |
| BspEI | TCCGGA | 1 cut(s) | 60 |
| BspPI | GGATC | 2 cut(s) | 123, 149 |
| BspQI | GCTCTTC | 1 cut(s) | 136 |
| BsrGI | TGTACA | 1 cut(s) | 3 |
| BssMI | GATC | 3 cut(s) | 72, 128, 154 |
| BssSI | CACGAG | 1 cut(s) | 11 |
| Bst2BI | CACGAG | 1 cut(s) | 11 |
| Bst2UI | CCWGG | 1 cut(s) | 133 |
| Bst6I | CTCTTC | 1 cut(s) | 136 |
| BstAUI | TGTACA | 1 cut(s) | 3 |
| BstEII | GGTNACC | 1 cut(s) | 119 |
| BstKTI | GATC | 3 cut(s) | 75, 131, 157 |
| BstMBI | GATC | 3 cut(s) | 72, 128, 154 |
| BstNI | CCWGG | 1 cut(s) | 133 |
| BstPI | GGTNACC | 1 cut(s) | 119 |
| BstSCI | CCNGG | 1 cut(s) | 131 |
| BstSLI | GKGCMC | 1 cut(s) | 18 |
| BstX2I | RGATCY | 2 cut(s) | 128, 154 |
| BstYI | RGATCY | 2 cut(s) | 128, 154 |
| Cfr13I | GGNCC | 1 cut(s) | 135 |
| Csp6I | GTAC | 1 cut(s) | 4 |
| CviJI | RGCY | 2 cut(s) | 99, 146 |
| CviKI_1 | RGCY | 2 cut(s) | 99, 146 |
| CviQI | GTAC | 1 cut(s) | 4 |
| DpnI | GATC | 3 cut(s) | 74, 130, 156 |
| DpnII | GATC | 3 cut(s) | 72, 128, 154 |
| DraIII | CACNNNGTG | 1 cut(s) | 22 |
| Eam1104I | CTCTTC | 1 cut(s) | 136 |
| EarI | CTCTTC | 1 cut(s) | 136 |
| Eco47I | GGWCC | 1 cut(s) | 135 |
| Eco91I | GGTNACC | 1 cut(s) | 119 |
| EcoO65I | GGTNACC | 1 cut(s) | 119 |
| EcoRII | CCWGG | 1 cut(s) | 131 |
| FaiI | YATR | 1 cut(s) | 35 |
| HapII | CCGG | 4 cut(s) | 30, 61, 124, 147 |
| HinfI | GANTC | 1 cut(s) | 57 |
| HpaII | CCGG | 4 cut(s) | 30, 61, 124, 147 |
| Hpy166II | GTNNAC | 1 cut(s) | 16 |
| Hpy188III | TCNNGA | 3 cut(s) | 54, 61, 76 |
| Hpy8I | GTNNAC | 1 cut(s) | 16 |
| HpyAV | CCTTC | 1 cut(s) | 110 |
| HpyCH4V | TGCA | 1 cut(s) | 16 |
| Kpn2I | TCCGGA | 1 cut(s) | 60 |
| Kzo9I | GATC | 3 cut(s) | 72, 128, 154 |
| LguI | GCTCTTC | 1 cut(s) | 136 |
| LpnPI | CCDG | 9 cut(s) | 33, 39, 43, 61, 74, 118, 137, 145, 151 |
| MaeIII | GTNAC | 1 cut(s) | 119 |
| MalI | GATC | 3 cut(s) | 74, 130, 156 |
| MboI | GATC | 3 cut(s) | 72, 128, 154 |
| MboII | GAAGA | 2 cut(s) | 79, 153 |
| MflI | RGATCY | 2 cut(s) | 128, 154 |
| MhlI | GDGCHC | 1 cut(s) | 18 |
| MluCI | AATT | 1 cut(s) | 79 |
| MnlI | CCTC | 3 cut(s) | 20, 57, 101 |
| MroI | TCCGGA | 1 cut(s) | 60 |
| MspI | CCGG | 4 cut(s) | 30, 61, 124, 147 |
| MspR9I | CCNGG | 1 cut(s) | 133 |
| MvaI | CCWGG | 1 cut(s) | 133 |
| NdeII | GATC | 3 cut(s) | 72, 128, 154 |
| PciSI | GCTCTTC | 1 cut(s) | 136 |
| PfeI | GAWTC | 1 cut(s) | 57 |
| PfoI | TCCNGGA | 1 cut(s) | 131 |
| Psp6I | CCWGG | 1 cut(s) | 131 |
| PspEI | GGTNACC | 1 cut(s) | 119 |
| PspGI | CCWGG | 1 cut(s) | 131 |
| PspPI | GGNCC | 1 cut(s) | 135 |
| PsuI | RGATCY | 2 cut(s) | 128, 154 |
| RsaI | GTAC | 1 cut(s) | 5 |
| RsaNI | GTAC | 1 cut(s) | 4 |
| SapI | GCTCTTC | 1 cut(s) | 136 |
| Sau3AI | GATC | 3 cut(s) | 72, 128, 154 |
| Sau96I | GGNCC | 1 cut(s) | 135 |
| ScrFI | CCNGG | 1 cut(s) | 133 |
| SduI | GDGCHC | 1 cut(s) | 18 |
| SetI | ASST | 2 cut(s) | 12, 121 |
| SinI | GGWCC | 1 cut(s) | 135 |
| Sse9I | AATT | 1 cut(s) | 79 |
| StyD4I | CCNGG | 1 cut(s) | 131 |
| TaqI | TCGA | 1 cut(s) | 106 |
| TasI | AATT | 1 cut(s) | 79 |
| TatI | WGTACW | 1 cut(s) | 3 |
| TfiI | GAWTC | 1 cut(s) | 57 |
| VneI | GTGCAC | 1 cut(s) | 14 |
| VpaK11BI | GGWCC | 1 cut(s) | 135 |
| XapI | RAATTY | 1 cut(s) | 79 |