Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002264

Physical Location & Seq

Genomic Coordinates Forward (+)

93563346 .. 93565895

Gene Structure 2550 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00072540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGAGTATCTGGATGATCTGCAAAGAGGTGTACCATAAGGCTCCTGGTATGCTTTTTGTTTCAGGGTTCCTGAAGAAAATTATTCACCACTTTCTTGGACTGCTCCGAGTGTTTCGAGGAGAACAAGATACAGCCGCCAGCGCAAGTGGTCAGCACCAGAAGCAGGCTCAGCCGGCGAAGCTTCATGATCCTCGACCGGGAGAACTCGAGGAGATTCTCATCGCTACTGTGCAAACAGGTAGCAAGGTAGAAGAACGAGACCCTTCTGATGACAGGCATTGTAGGATTTGCGATACAAGTGGTGATCATGGTACTGAAACGGGCCCCGAAAGATCCAACGCATATGTAGTGCTTTGTGGGATTTGTGATGATGGCCCGTGCCAAAATGAGGCTGACCACAAGGAAGAACATTACGAAGAACTCCTTTTTCGTTATATTTGTAACATGGTTGGTGAGCACTGGACTGAAAATTGCCCTGACAACGATTGCGACTTTGATCCTCCCAATGACTGGGACCTTACAGAGAATAAACGGATAGATTTGTTCCCTCCGTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

185

Amino Acids

21.05

Weight (kDa)

4.89

Isoelectric Point (pI)

42.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002264)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04712 FvH4_2g40191 FvH4_2g40203 FvH4_2g40210 FvH4_2g40220 FvH4_3g18081
rosa_chinensis	RchiOBHm_Chr1g0378061 RchiOBHm_Chr5g0003061 RchiOBHm_Chr5g0030501
rosa_laevigata	RLG00000031096 RLG00000031106 RLG00000031109
rosa_multiflora	Rmu_sc0000280.1_g000001 Rmu_sc0015917.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019880 Rroxscaffold_1G00019910 Rroxscaffold_1G00049800 Rroxscaffold_1G00072540 Rroxscaffold_1G00073090
rosa_rugosa	Rorug04G0396300 Rorug04G0396400 Rorug04G0396500 Rorug04G0396600 Rorug04G0401800 Rorug05G0117400 Rorug05G0334100 Rorug05G0334100
rosa_samantha	Rh5AG028100 Rh5AG028200 Rh5AG210200 Rh5AG396800 Rh5AG396900 Rh5BG028300 Rh5BG209400 Rh5BG408900 Rh5BG409100 Rh5CG027500 Rh5CG030600 Rh5CG030700 Rh5CG433600 Rh5CG433800
rosa_wichuraiana	Rw5G002290 Rw5G019200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	510
AciI	CCGC	1 cut(s)	135
AclWI	GGATC	3 cut(s)	182, 327, 491
AcuI	CTGAAG	1 cut(s)	92
AfaI	GTAC	2 cut(s)	32, 313
AfiI	CCNNNNNNNGG	4 cut(s)	163, 197, 388, 510
AjnI	CCWGG	1 cut(s)	43
AluBI	AGCT	1 cut(s)	181
AluI	AGCT	1 cut(s)	181
Alw21I	GWGCWC	1 cut(s)	459
Alw26I	GTCTC	1 cut(s)	252
AlwI	GGATC	3 cut(s)	182, 327, 491
Ama87I	CYCGRG	1 cut(s)	206
AoxI	GGCC	2 cut(s)	322, 373
ApaI	GGGCCC	1 cut(s)	326
AspLEI	GCGC	1 cut(s)	143
AspS9I	GGNCC	4 cut(s)	322, 323, 374, 514
AsuC2I	CCSGG	1 cut(s)	198
AsuHPI	GGTGA	3 cut(s)	77, 314, 464
AvaI	CYCGRG	1 cut(s)	206
AvaII	GGWCC	1 cut(s)	514
BaeGI	GKGCMC	1 cut(s)	326
BanII	GRGCYC	1 cut(s)	326
Bbv12I	GWGCWC	1 cut(s)	459
BccI	CCATC	1 cut(s)	365
BciT130I	CCWGG	1 cut(s)	45
BclI	TGATCA	1 cut(s)	304
BcnI	CCSGG	1 cut(s)	198
BcoDI	GTCTC	1 cut(s)	252
BisI	GCNGC	1 cut(s)	135
BlpI	GCTNAGC	1 cut(s)	168
BlsI	GCNGC	1 cut(s)	136
Bme1390I	CCNGG	2 cut(s)	45, 198
Bme18I	GGWCC	1 cut(s)	514
BmeT110I	CYCGRG	1 cut(s)	206
BmgT120I	GGNCC	4 cut(s)	322, 323, 374, 514
BmiI	GGNNCC	5 cut(s)	42, 68, 324, 325, 515
BmrFI	CCNGG	2 cut(s)	45, 198
BmrI	ACTGGG	1 cut(s)	520
BmuI	ACTGGG	1 cut(s)	520
Bpu1102I	GCTNAGC	1 cut(s)	168
BpuMI	CCSGG	1 cut(s)	198
BsaBI	GATNNNNATC	1 cut(s)	218
BsaI	GGTCTC	1 cut(s)	252
Bsc4I	CCNNNNNNNGG	4 cut(s)	163, 197, 388, 510
Bse118I	RCCGGY	1 cut(s)	172
Bse1I	ACTGG	2 cut(s)	464, 515
Bse8I	GATNNNNATC	1 cut(s)	218
BseBI	CCWGG	1 cut(s)	45
BseGI	GGATG	1 cut(s)	18
BseJI	GATNNNNATC	1 cut(s)	218
BseLI	CCNNNNNNNGG	4 cut(s)	163, 197, 388, 510
BseMII	CTCAG	1 cut(s)	182
BseNI	ACTGG	2 cut(s)	464, 515
BseRI	GAGGAG	2 cut(s)	132, 224
BseSI	GKGCMC	1 cut(s)	326
Bsh1285I	CGRYCG	1 cut(s)	197
BshFI	GGCC	2 cut(s)	324, 375
BsiEI	CGRYCG	1 cut(s)	197
BsiHKAI	GWGCWC	1 cut(s)	459
BsiHKCI	CYCGRG	1 cut(s)	206
BsiSI	CCGG	2 cut(s)	173, 197
BslFI	GGGAC	1 cut(s)	527
BslI	CCNNNNNNNGG	4 cut(s)	163, 197, 388, 510
BsmAI	GTCTC	1 cut(s)	252
BsmFI	GGGAC	1 cut(s)	527
BsnI	GGCC	2 cut(s)	324, 375
Bso31I	GGTCTC	1 cut(s)	252
BsoBI	CYCGRG	1 cut(s)	206
Bsp120I	GGGCCC	1 cut(s)	322
Bsp1286I	GDGCHC	2 cut(s)	326, 459
Bsp143I	GATC	5 cut(s)	15, 187, 304, 332, 496
Bsp1720I	GCTNAGC	1 cut(s)	168
BspACI	CCGC	1 cut(s)	135
BspANI	GGCC	2 cut(s)	324, 375
BspCNI	CTCAG	1 cut(s)	181
BspHI	TCATGA	1 cut(s)	184
BspLI	GGNNCC	5 cut(s)	42, 68, 324, 325, 515
BspPI	GGATC	3 cut(s)	182, 327, 491
BspTNI	GGTCTC	1 cut(s)	252
BsrFI	RCCGGY	1 cut(s)	172
BsrI	ACTGG	2 cut(s)	464, 515
BssAI	RCCGGY	1 cut(s)	172
BssMI	GATC	5 cut(s)	15, 187, 304, 332, 496
Bst2UI	CCWGG	1 cut(s)	45
Bst4CI	ACNGT	1 cut(s)	229
BstC8I	GCNNGC	3 cut(s)	139, 165, 174
BstDEI	CTNAG	1 cut(s)	168
BstF5I	GGATG	1 cut(s)	18
BstHHI	GCGC	1 cut(s)	143
BstKTI	GATC	5 cut(s)	18, 190, 307, 335, 499
BstMAI	GTCTC	1 cut(s)	252
BstMBI	GATC	5 cut(s)	15, 187, 304, 332, 496
BstMCI	CGRYCG	1 cut(s)	197
BstMWI	GCNNNNNNNGC	5 cut(s)	140, 160, 169, 173, 178
BstNI	CCWGG	1 cut(s)	45
BstSCI	CCNGG	2 cut(s)	43, 196
BstSLI	GKGCMC	1 cut(s)	326
BstX2I	RGATCY	1 cut(s)	332
BstXI	CCANNNNNNTGG	1 cut(s)	95
BstYI	RGATCY	1 cut(s)	332
BsuRI	GGCC	2 cut(s)	324, 375
BtgZI	GCGATG	1 cut(s)	205
BtsCI	GGATG	1 cut(s)	18
BtsIMutI	CAGTG	1 cut(s)	457
Cac8I	GCNNGC	3 cut(s)	139, 165, 174
CciI	TCATGA	1 cut(s)	184
CfoI	GCGC	1 cut(s)	143
Cfr10I	RCCGGY	1 cut(s)	172
Cfr13I	GGNCC	4 cut(s)	322, 323, 374, 514
Csp6I	GTAC	2 cut(s)	31, 312
CviAII	CATG	3 cut(s)	185, 308, 445
CviJI	RGCY	8 cut(s)	41, 134, 167, 172, 181, 324, 375, 392
CviKI_1	RGCY	8 cut(s)	41, 134, 167, 172, 181, 324, 375, 392
CviQI	GTAC	2 cut(s)	31, 312
DdeI	CTNAG	1 cut(s)	168
DpnI	GATC	5 cut(s)	17, 189, 306, 334, 498
DpnII	GATC	5 cut(s)	15, 187, 304, 332, 496
Eco24I	GRGCYC	1 cut(s)	326
Eco31I	GGTCTC	1 cut(s)	252
Eco47I	GGWCC	1 cut(s)	514
Eco57I	CTGAAG	1 cut(s)	92
Eco88I	CYCGRG	1 cut(s)	206
EcoO109I	RGGNCCY	2 cut(s)	323, 514
EcoRII	CCWGG	1 cut(s)	43
EcoT38I	GRGCYC	1 cut(s)	326
FaeI	CATG	3 cut(s)	188, 311, 448
FaiI	YATR	9 cut(s)	36, 50, 186, 309, 343, 345, 435, 446, 556
FalI	AAGNNNNNCTT	2 cut(s)	408, 440
FaqI	GGGAC	1 cut(s)	527
FatI	CATG	3 cut(s)	184, 307, 444
FauNDI	CATATG	1 cut(s)	343
FbaI	TGATCA	1 cut(s)	304
Fnu4HI	GCNGC	1 cut(s)	135
FokI	GGATG	1 cut(s)	25
FriOI	GRGCYC	1 cut(s)	326
Fsp4HI	GCNGC	1 cut(s)	135
GlaI	GCGC	1 cut(s)	142
GluI	GCNGC	1 cut(s)	135
HaeIII	GGCC	2 cut(s)	324, 375
HapII	CCGG	2 cut(s)	173, 197
HhaI	GCGC	1 cut(s)	143
Hin1II	CATG	3 cut(s)	188, 311, 448
Hin6I	GCGC	1 cut(s)	141
HinP1I	GCGC	1 cut(s)	141
HindIII	AAGCTT	1 cut(s)	179
HinfI	GANTC	1 cut(s)	214
HpaII	CCGG	2 cut(s)	173, 197
HphI	GGTGA	3 cut(s)	77, 314, 464
Hpy166II	GTNNAC	1 cut(s)	31
Hpy188I	TCNGA	2 cut(s)	107, 268
Hpy188III	TCNNGA	3 cut(s)	10, 70, 185
Hpy8I	GTNNAC	1 cut(s)	31
HpyAV	CCTTC	1 cut(s)	273
HpyCH4III	ACNGT	1 cut(s)	229
HpyCH4V	TGCA	2 cut(s)	21, 232
HpyF10VI	GCNNNNNNNGC	5 cut(s)	140, 160, 169, 173, 178
HpyF3I	CTNAG	1 cut(s)	168
Hsp92II	CATG	3 cut(s)	188, 311, 448
HspAI	GCGC	1 cut(s)	141
KroI	GCCGGC	1 cut(s)	172
KroNI	GCCGGC	1 cut(s)	174
Ksp22I	TGATCA	1 cut(s)	304
Kzo9I	GATC	5 cut(s)	15, 187, 304, 332, 496
LmnI	GCTCC	2 cut(s)	46, 108
MaeIII	GTNAC	1 cut(s)	440
MalI	GATC	5 cut(s)	17, 189, 306, 334, 498
MboI	GATC	5 cut(s)	15, 187, 304, 332, 496
MboII	GAAGA	4 cut(s)	85, 263, 416, 428
MflI	RGATCY	1 cut(s)	332
MhlI	GDGCHC	2 cut(s)	326, 459
MluCI	AATT	2 cut(s)	78, 469
MmeI	TCCRAC	1 cut(s)	360
MnlI	CCTC	7 cut(s)	19, 110, 201, 202, 382, 510, 558
MroNI	GCCGGC	1 cut(s)	172
MspI	CCGG	2 cut(s)	173, 197
MspR9I	CCNGG	2 cut(s)	45, 198
MvaI	CCWGG	1 cut(s)	45
MwoI	GCNNNNNNNGC	5 cut(s)	140, 160, 169, 173, 178
NaeI	GCCGGC	1 cut(s)	174
NciI	CCSGG	1 cut(s)	198
NdeI	CATATG	1 cut(s)	343
NdeII	GATC	5 cut(s)	15, 187, 304, 332, 496
NgoMIV	GCCGGC	1 cut(s)	172
NlaIII	CATG	3 cut(s)	188, 311, 448
NlaIV	GGNNCC	5 cut(s)	42, 68, 324, 325, 515
PaeR7I	CTCGAG	1 cut(s)	206
PagI	TCATGA	1 cut(s)	184
PdiI	GCCGGC	1 cut(s)	174
PfeI	GAWTC	1 cut(s)	214
PflMI	CCANNNNNTGG	1 cut(s)	510
PkrI	GCNGC	1 cut(s)	136
PpuMI	RGGWCCY	1 cut(s)	514
Psp5II	RGGWCCY	1 cut(s)	514
Psp6I	CCWGG	1 cut(s)	43
PspGI	CCWGG	1 cut(s)	43
PspN4I	GGNNCC	5 cut(s)	42, 68, 324, 325, 515
PspOMI	GGGCCC	1 cut(s)	322
PspPI	GGNCC	4 cut(s)	322, 323, 374, 514
PspPPI	RGGWCCY	1 cut(s)	514
PspXI	VCTCGAGB	1 cut(s)	206
PsuI	RGATCY	1 cut(s)	332
RsaI	GTAC	2 cut(s)	32, 313
RsaNI	GTAC	2 cut(s)	31, 312
SatI	GCNGC	1 cut(s)	135
Sau3AI	GATC	5 cut(s)	15, 187, 304, 332, 496
Sau96I	GGNCC	4 cut(s)	322, 323, 374, 514
ScrFI	CCNGG	2 cut(s)	45, 198
SduI	GDGCHC	2 cut(s)	326, 459
SetI	ASST	5 cut(s)	30, 183, 241, 249, 519
Sfr274I	CTCGAG	1 cut(s)	206
SinI	GGWCC	1 cut(s)	514
SlaI	CTCGAG	1 cut(s)	206
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
Sse9I	AATT	2 cut(s)	78, 469
SsiI	CCGC	1 cut(s)	135
StyD4I	CCNGG	2 cut(s)	43, 196
TaaI	ACNGT	1 cut(s)	229
TaqI	TCGA	3 cut(s)	115, 193, 207
TasI	AATT	2 cut(s)	78, 469
TauI	GCSGC	1 cut(s)	137
TfiI	GAWTC	1 cut(s)	214
TscAI	CASTG	1 cut(s)	464
TspDTI	ATGAA	1 cut(s)	173
TspGWI	ACGGA	2 cut(s)	540, 547
TspRI	CASTG	1 cut(s)	464
Van91I	CCANNNNNTGG	1 cut(s)	510
VpaK11BI	GGWCC	1 cut(s)	514
XcmI	CCANNNNNNNNNTGG	1 cut(s)	41
XhoI	CTCGAG	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.