Rorug05G0117400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002264
Physical Location & Seq
Forward (+)
10392589 .. 10393059
471 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0117400.1

Sequence Viewer

Length: 471 bp
ATGGATTTCAACAAGGACTCCTCCTCCACCGTCATCAGAATCCGGCAGCGGTTGCCGGATTTCCTGCAGTCCGTGAAGCTCAAGTATGTGAAGCTTGGGTATGGCTACTCGTGCAACCCAGCTACCATTCTCATGTTCCTTCTCATCTCGCCTTTGTTGGCGTCGGTTCTGGTACAGCTGACGGGTGTCGACATAACCCGGTTCGTCTCCGAGGTCTGGACCAACCAGGCCGTCCGGCTGGAAAGCATGGACGCCGCCACGCGACTCGCTGGTTCCGGCCTGGTTCTCTTCTTCTTAGCCCTCTACTGGTCCAAGCGGTCCACACCTGTTTACCTGGTGAACTTCTCCTGCTACAAACCCGACGAGGAGAGAAAAATGTCGATGGAGGAAGAAGAAGAGGAGAGGAGGAGAGAGGTGGGTGGAGAAGGAGAGTTTTTTAAACTATTATACATATATTATTTTCGTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

156

Amino Acids

18.14

Weight (kDa)

7.69

Isoelectric Point (pI)

51.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 189
AccII CGCG 1 cut(s) 262
AciI CCGC 3 cut(s) 49, 255, 316
AcyI GRCGYC 2 cut(s) 161, 252
AfaI GTAC 1 cut(s) 174
AfiI CCNNNNNNNGG 2 cut(s) 216, 306
AgsI TTSAA 1 cut(s) 10
AjnI CCWGG 3 cut(s) 225, 279, 333
AluBI AGCT 4 cut(s) 79, 94, 122, 178
AluI AGCT 4 cut(s) 79, 94, 122, 178
Alw26I GTCTC 1 cut(s) 211
AoxI GGCC 2 cut(s) 228, 277
ApeKI GCWGC 1 cut(s) 46
AspS9I GGNCC 3 cut(s) 219, 309, 318
AsuC2I CCSGG 1 cut(s) 199
AsuHPI GGTGA 1 cut(s) 349
AvaII GGWCC 3 cut(s) 219, 309, 318
BauI CACGAG 1 cut(s) 109
BbvI GCAGC 1 cut(s) 58
BccI CCATC 1 cut(s) 376
BceAI ACGGC 1 cut(s) 215
BciT130I CCWGG 3 cut(s) 227, 281, 335
BcnI CCSGG 1 cut(s) 199
BcoDI GTCTC 1 cut(s) 211
BfmI CTRYAG 1 cut(s) 65
BisI GCNGC 2 cut(s) 47, 255
BlsI GCNGC 2 cut(s) 48, 256
Bme1390I CCNGG 4 cut(s) 199, 227, 281, 335
Bme18I GGWCC 3 cut(s) 219, 309, 318
BmgT120I GGNCC 3 cut(s) 219, 309, 318
BmiI GGNNCC 1 cut(s) 274
BmrFI CCNGG 4 cut(s) 199, 227, 281, 335
BoxI GACNNNNGTC 1 cut(s) 185
BpuEI CTTGAG 1 cut(s) 65
BpuMI CCSGG 1 cut(s) 199
BsaHI GRCGYC 2 cut(s) 161, 252
BsaJI CCNNGG 1 cut(s) 210
BsaXI ACNNNNNCTCC 3 cut(s) 8, 32, 38
Bsc4I CCNNNNNNNGG 2 cut(s) 216, 306
Bse1I ACTGG 1 cut(s) 311
BseBI CCWGG 3 cut(s) 227, 281, 335
BseDI CCNNGG 1 cut(s) 210
BseLI CCNNNNNNNGG 2 cut(s) 216, 306
BseNI ACTGG 1 cut(s) 311
BseRI GAGGAG 6 cut(s) 10, 13, 380, 413, 418, 421
BseXI GCAGC 1 cut(s) 58
BseYI CCCAGC 1 cut(s) 118
Bsh1236I CGCG 1 cut(s) 262
BshFI GGCC 2 cut(s) 230, 279
BsiSI CCGG 5 cut(s) 43, 56, 199, 235, 276
BslI CCNNNNNNNGG 2 cut(s) 216, 306
BsmAI GTCTC 1 cut(s) 211
BsmBI CGTCTC 1 cut(s) 211
BsnI GGCC 2 cut(s) 230, 279
BspACI CCGC 3 cut(s) 49, 255, 316
BspANI GGCC 2 cut(s) 230, 279
BspFNI CGCG 1 cut(s) 262
BspLI GGNNCC 1 cut(s) 274
BspMAI CTGCAG 1 cut(s) 69
BsrI ACTGG 1 cut(s) 311
BssECI CCNNGG 1 cut(s) 210
BssNI GRCGYC 2 cut(s) 161, 252
BssSI CACGAG 1 cut(s) 109
Bst2BI CACGAG 1 cut(s) 109
Bst2UI CCWGG 3 cut(s) 227, 281, 335
Bst4CI ACNGT 1 cut(s) 31
Bst6I CTCTTC 2 cut(s) 293, 390
BstACI GRCGYC 2 cut(s) 161, 252
BstAPI GCANNNNNTGC 1 cut(s) 52
BstDEI CTNAG 1 cut(s) 295
BstFNI CGCG 1 cut(s) 262
BstMAI GTCTC 1 cut(s) 211
BstMWI GCNNNNNNNGC 2 cut(s) 52, 111
BstNI CCWGG 3 cut(s) 227, 281, 335
BstPAI GACNNNNGTC 1 cut(s) 185
BstSCI CCNGG 4 cut(s) 197, 225, 279, 333
BstSFI CTRYAG 1 cut(s) 65
BstUI CGCG 1 cut(s) 262
BstV1I GCAGC 1 cut(s) 58
BsuRI GGCC 2 cut(s) 230, 279
Cfr13I GGNCC 3 cut(s) 219, 309, 318
CseI GACGC 2 cut(s) 150, 260
CsiI ACCWGGT 1 cut(s) 333
Csp6I GTAC 1 cut(s) 173
CviAII CATG 2 cut(s) 133, 247
CviJI RGCY 9 cut(s) 79, 94, 105, 122, 178, 230, 238, 279, 299
CviKI_1 RGCY 9 cut(s) 79, 94, 105, 122, 178, 230, 238, 279, 299
CviQI GTAC 1 cut(s) 173
DdeI CTNAG 1 cut(s) 295
DraI TTTAAA 1 cut(s) 439
Eam1104I CTCTTC 2 cut(s) 293, 390
EarI CTCTTC 2 cut(s) 293, 390
Eco47I GGWCC 3 cut(s) 219, 309, 318
EcoRII CCWGG 3 cut(s) 225, 279, 333
Esp3I CGTCTC 1 cut(s) 211
FaeI CATG 2 cut(s) 136, 250
FaiI YATR 8 cut(s) 87, 102, 134, 194, 248, 448, 452, 454
FatI CATG 2 cut(s) 132, 246
FblI GTMKAC 1 cut(s) 189
Fnu4HI GCNGC 2 cut(s) 47, 255
Fsp4HI GCNGC 2 cut(s) 47, 255
GluI GCNGC 2 cut(s) 47, 255
GsaI CCCAGC 1 cut(s) 122
HaeIII GGCC 2 cut(s) 230, 279
HapII CCGG 5 cut(s) 43, 56, 199, 235, 276
HgaI GACGC 2 cut(s) 150, 260
Hin1I GRCGYC 2 cut(s) 161, 252
Hin1II CATG 2 cut(s) 136, 250
HincII GTYRAC 1 cut(s) 190
HindII GTYRAC 1 cut(s) 190
HindIII AAGCTT 1 cut(s) 92
HinfI GANTC 3 cut(s) 17, 39, 264
HpaII CCGG 5 cut(s) 43, 56, 199, 235, 276
HphI GGTGA 1 cut(s) 349
Hpy166II GTNNAC 4 cut(s) 190, 321, 331, 340
Hpy188I TCNGA 2 cut(s) 38, 211
Hpy188III TCNNGA 1 cut(s) 217
Hpy8I GTNNAC 4 cut(s) 190, 321, 331, 340
Hpy99I CGWCG 2 cut(s) 166, 365
HpyAV CCTTC 2 cut(s) 149, 419
HpyCH4III ACNGT 1 cut(s) 31
HpyCH4V TGCA 2 cut(s) 67, 114
HpyF10VI GCNNNNNNNGC 2 cut(s) 52, 111
HpyF3I CTNAG 1 cut(s) 295
Hsp92I GRCGYC 2 cut(s) 161, 252
Hsp92II CATG 2 cut(s) 136, 250
Lsp1109I GCAGC 1 cut(s) 58
MabI ACCWGGT 1 cut(s) 333
MboII GAAGA 5 cut(s) 280, 283, 401, 404, 407
MlyI GAGTC 2 cut(s) 11, 258
MseI TTAA 1 cut(s) 438
MslI CAYNNNNRTG 1 cut(s) 131
MspA1I CMGCKG 2 cut(s) 49, 178
MspI CCGG 5 cut(s) 43, 56, 199, 235, 276
MspR9I CCNGG 4 cut(s) 199, 227, 281, 335
MvaI CCWGG 3 cut(s) 227, 281, 335
MvnI CGCG 1 cut(s) 262
MwoI GCNNNNNNNGC 2 cut(s) 52, 111
NciI CCSGG 1 cut(s) 199
NlaIII CATG 2 cut(s) 136, 250
NlaIV GGNNCC 1 cut(s) 274
PfeI GAWTC 1 cut(s) 39
PkrI GCNGC 2 cut(s) 48, 256
PleI GAGTC 2 cut(s) 11, 258
PpsI GAGTC 2 cut(s) 11, 258
PshAI GACNNNNGTC 1 cut(s) 185
Psp6I CCWGG 3 cut(s) 225, 279, 333
PspFI CCCAGC 1 cut(s) 118
PspGI CCWGG 3 cut(s) 225, 279, 333
PspN4I GGNNCC 1 cut(s) 274
PspPI GGNCC 3 cut(s) 219, 309, 318
PstI CTGCAG 1 cut(s) 69
PvuII CAGCTG 1 cut(s) 178
RsaI GTAC 1 cut(s) 174
RsaNI GTAC 1 cut(s) 173
RseI CAYNNNNRTG 1 cut(s) 131
SalI GTCGAC 1 cut(s) 188
SaqAI TTAA 1 cut(s) 438
SatI GCNGC 2 cut(s) 47, 255
Sau96I GGNCC 3 cut(s) 219, 309, 318
SchI GAGTC 2 cut(s) 11, 258
ScrFI CCNGG 4 cut(s) 199, 227, 281, 335
SetI ASST 8 cut(s) 81, 96, 124, 180, 216, 328, 336, 417
SexAI ACCWGGT 1 cut(s) 333
SfcI CTRYAG 1 cut(s) 65
SinI GGWCC 3 cut(s) 219, 309, 318
SmiMI CAYNNNNRTG 1 cut(s) 131
SmlI CTYRAG 1 cut(s) 80
SmoI CTYRAG 1 cut(s) 80
SsiI CCGC 3 cut(s) 49, 255, 316
StyD4I CCNGG 4 cut(s) 197, 225, 279, 333
TaaI ACNGT 1 cut(s) 31
TaqI TCGA 2 cut(s) 189, 380
TauI GCSGC 1 cut(s) 257
TfiI GAWTC 1 cut(s) 39
Tru1I TTAA 1 cut(s) 438
Tru9I TTAA 1 cut(s) 438
TseI GCWGC 1 cut(s) 46
TspGWI ACGGA 1 cut(s) 61
VpaK11BI GGWCC 3 cut(s) 219, 309, 318
XmiI GTMKAC 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.