Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0002264

Physical Location & Seq

Genomic Coordinates Reverse (-)

1696888 .. 1700454

Gene Structure 3567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG027500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGATCTGCAAAGAGGTGTACCATAAGGCTCCTGGTATGCTTTTTGTTTCAGGGTTCCTGAAGAAAATTATTCACCACTTTCTTGGACTGCTCCGAGTGTTTCGAGGAGAACAAGATACAGCCGCCAGCGCAAGTGGTCAGCACCAGAAGCAGGCTCAGCCGTCGAAGCTTCATGATCCTCGACCGGGAGAACTCGAGGAGATTCTCATCGCTACTGGTAGCAAGGTAGAAGAACGAGACCCAAAAGATCCAAGGCATATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

87

Amino Acids

9.81

Weight (kDa)

8.85

Isoelectric Point (pI)

34.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002264)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04712 FvH4_2g40191 FvH4_2g40203 FvH4_2g40210 FvH4_2g40220 FvH4_3g18081
rosa_chinensis	RchiOBHm_Chr1g0378061 RchiOBHm_Chr5g0003061 RchiOBHm_Chr5g0030501
rosa_laevigata	RLG00000031096 RLG00000031106 RLG00000031109
rosa_multiflora	Rmu_sc0000280.1_g000001 Rmu_sc0015917.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019880 Rroxscaffold_1G00019910 Rroxscaffold_1G00049800 Rroxscaffold_1G00072540 Rroxscaffold_1G00073090
rosa_rugosa	Rorug04G0396300 Rorug04G0396400 Rorug04G0396500 Rorug04G0396600 Rorug04G0401800 Rorug05G0117400 Rorug05G0334100 Rorug05G0334100
rosa_samantha	Rh5AG028100 Rh5AG028200 Rh5AG210200 Rh5AG396800 Rh5AG396900 Rh5BG028300 Rh5BG209400 Rh5BG408900 Rh5BG409100 Rh5CG027500 Rh5CG030600 Rh5CG030700 Rh5CG433600 Rh5CG433800
rosa_wichuraiana	Rw5G002290 Rw5G019200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	123
AclWI	GGATC	2 cut(s)	170, 242
AcuI	CTGAAG	1 cut(s)	80
AfaI	GTAC	1 cut(s)	20
AfiI	CCNNNNNNNGG	2 cut(s)	151, 185
AjnI	CCWGG	1 cut(s)	31
AluBI	AGCT	1 cut(s)	169
AluI	AGCT	1 cut(s)	169
Alw26I	GTCTC	1 cut(s)	231
AlwI	GGATC	2 cut(s)	170, 242
Ama87I	CYCGRG	1 cut(s)	194
AspLEI	GCGC	1 cut(s)	131
AsuC2I	CCSGG	1 cut(s)	186
AsuHPI	GGTGA	1 cut(s)	65
AvaI	CYCGRG	1 cut(s)	194
BceAI	ACGGC	1 cut(s)	145
BciT130I	CCWGG	1 cut(s)	33
BcnI	CCSGG	1 cut(s)	186
BcoDI	GTCTC	1 cut(s)	231
BisI	GCNGC	1 cut(s)	123
BlpI	GCTNAGC	1 cut(s)	156
BlsI	GCNGC	1 cut(s)	124
Bme1390I	CCNGG	2 cut(s)	33, 186
BmeT110I	CYCGRG	1 cut(s)	194
BmiI	GGNNCC	2 cut(s)	30, 56
BmrFI	CCNGG	2 cut(s)	33, 186
Bpu1102I	GCTNAGC	1 cut(s)	156
BpuMI	CCSGG	1 cut(s)	186
BsaBI	GATNNNNATC	1 cut(s)	206
BsaI	GGTCTC	1 cut(s)	231
BsaJI	CCNNGG	1 cut(s)	251
Bsc4I	CCNNNNNNNGG	2 cut(s)	151, 185
Bse1I	ACTGG	1 cut(s)	220
Bse8I	GATNNNNATC	1 cut(s)	206
BseBI	CCWGG	1 cut(s)	33
BseDI	CCNNGG	1 cut(s)	251
BseJI	GATNNNNATC	1 cut(s)	206
BseLI	CCNNNNNNNGG	2 cut(s)	151, 185
BseMII	CTCAG	1 cut(s)	170
BseNI	ACTGG	1 cut(s)	220
BseRI	GAGGAG	2 cut(s)	120, 212
Bsh1285I	CGRYCG	1 cut(s)	185
BsiEI	CGRYCG	1 cut(s)	185
BsiHKCI	CYCGRG	1 cut(s)	194
BsiSI	CCGG	1 cut(s)	185
BslI	CCNNNNNNNGG	2 cut(s)	151, 185
BsmAI	GTCTC	1 cut(s)	231
Bso31I	GGTCTC	1 cut(s)	231
BsoBI	CYCGRG	1 cut(s)	194
Bsp143I	GATC	3 cut(s)	3, 175, 247
Bsp1720I	GCTNAGC	1 cut(s)	156
BspACI	CCGC	1 cut(s)	123
BspCNI	CTCAG	1 cut(s)	169
BspHI	TCATGA	1 cut(s)	172
BspLI	GGNNCC	2 cut(s)	30, 56
BspPI	GGATC	2 cut(s)	170, 242
BspTNI	GGTCTC	1 cut(s)	231
BsrI	ACTGG	1 cut(s)	220
BssECI	CCNNGG	1 cut(s)	251
BssMI	GATC	3 cut(s)	3, 175, 247
BssT1I	CCWWGG	1 cut(s)	251
Bst2UI	CCWGG	1 cut(s)	33
BstC8I	GCNNGC	2 cut(s)	127, 153
BstDEI	CTNAG	1 cut(s)	156
BstHHI	GCGC	1 cut(s)	131
BstKTI	GATC	3 cut(s)	6, 178, 250
BstMAI	GTCTC	1 cut(s)	231
BstMBI	GATC	3 cut(s)	3, 175, 247
BstMCI	CGRYCG	1 cut(s)	185
BstMWI	GCNNNNNNNGC	4 cut(s)	128, 148, 157, 166
BstNI	CCWGG	1 cut(s)	33
BstSCI	CCNGG	2 cut(s)	31, 184
BstX2I	RGATCY	1 cut(s)	247
BstXI	CCANNNNNNTGG	1 cut(s)	83
BstYI	RGATCY	1 cut(s)	247
BtgZI	GCGATG	1 cut(s)	193
Cac8I	GCNNGC	2 cut(s)	127, 153
CciI	TCATGA	1 cut(s)	172
CfoI	GCGC	1 cut(s)	131
Csp6I	GTAC	1 cut(s)	19
CviAII	CATG	1 cut(s)	173
CviJI	RGCY	5 cut(s)	29, 122, 155, 160, 169
CviKI_1	RGCY	5 cut(s)	29, 122, 155, 160, 169
CviQI	GTAC	1 cut(s)	19
DdeI	CTNAG	1 cut(s)	156
DpnI	GATC	3 cut(s)	5, 177, 249
DpnII	GATC	3 cut(s)	3, 175, 247
Eco130I	CCWWGG	1 cut(s)	251
Eco31I	GGTCTC	1 cut(s)	231
Eco57I	CTGAAG	1 cut(s)	80
Eco88I	CYCGRG	1 cut(s)	194
EcoRII	CCWGG	1 cut(s)	31
EcoT14I	CCWWGG	1 cut(s)	251
ErhI	CCWWGG	1 cut(s)	251
FaeI	CATG	1 cut(s)	176
FaiI	YATR	5 cut(s)	24, 38, 174, 258, 260
FatI	CATG	1 cut(s)	172
FauNDI	CATATG	1 cut(s)	258
Fnu4HI	GCNGC	1 cut(s)	123
Fsp4HI	GCNGC	1 cut(s)	123
GlaI	GCGC	1 cut(s)	130
GluI	GCNGC	1 cut(s)	123
HapII	CCGG	1 cut(s)	185
HhaI	GCGC	1 cut(s)	131
Hin1II	CATG	1 cut(s)	176
Hin6I	GCGC	1 cut(s)	129
HinP1I	GCGC	1 cut(s)	129
HindIII	AAGCTT	1 cut(s)	167
HinfI	GANTC	1 cut(s)	202
HpaII	CCGG	1 cut(s)	185
HphI	GGTGA	1 cut(s)	65
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188I	TCNGA	1 cut(s)	95
Hpy188III	TCNNGA	2 cut(s)	58, 173
Hpy8I	GTNNAC	1 cut(s)	19
Hpy99I	CGWCG	1 cut(s)	166
HpyCH4V	TGCA	1 cut(s)	9
HpyF10VI	GCNNNNNNNGC	4 cut(s)	128, 148, 157, 166
HpyF3I	CTNAG	1 cut(s)	156
Hsp92II	CATG	1 cut(s)	176
HspAI	GCGC	1 cut(s)	129
Kzo9I	GATC	3 cut(s)	3, 175, 247
LmnI	GCTCC	2 cut(s)	34, 96
LpnPI	CCDG	9 cut(s)	18, 36, 45, 71, 137, 139, 158, 198, 201
MalI	GATC	3 cut(s)	5, 177, 249
MboI	GATC	3 cut(s)	3, 175, 247
MboII	GAAGA	2 cut(s)	73, 242
MflI	RGATCY	1 cut(s)	247
MluCI	AATT	1 cut(s)	66
MnlI	CCTC	4 cut(s)	7, 98, 189, 190
MspI	CCGG	1 cut(s)	185
MspR9I	CCNGG	2 cut(s)	33, 186
MvaI	CCWGG	1 cut(s)	33
MwoI	GCNNNNNNNGC	4 cut(s)	128, 148, 157, 166
NciI	CCSGG	1 cut(s)	186
NdeI	CATATG	1 cut(s)	258
NdeII	GATC	3 cut(s)	3, 175, 247
NlaIII	CATG	1 cut(s)	176
NlaIV	GGNNCC	2 cut(s)	30, 56
PaeR7I	CTCGAG	1 cut(s)	194
PagI	TCATGA	1 cut(s)	172
PfeI	GAWTC	1 cut(s)	202
PkrI	GCNGC	1 cut(s)	124
Psp6I	CCWGG	1 cut(s)	31
PspGI	CCWGG	1 cut(s)	31
PspN4I	GGNNCC	2 cut(s)	30, 56
PspXI	VCTCGAGB	1 cut(s)	194
PsuI	RGATCY	1 cut(s)	247
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
SatI	GCNGC	1 cut(s)	123
Sau3AI	GATC	3 cut(s)	3, 175, 247
ScrFI	CCNGG	2 cut(s)	33, 186
SetI	ASST	3 cut(s)	18, 171, 228
Sfr274I	CTCGAG	1 cut(s)	194
SlaI	CTCGAG	1 cut(s)	194
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	1 cut(s)	66
SsiI	CCGC	1 cut(s)	123
StyD4I	CCNGG	2 cut(s)	31, 184
StyI	CCWWGG	1 cut(s)	251
TaqI	TCGA	4 cut(s)	103, 164, 181, 195
TasI	AATT	1 cut(s)	66
TauI	GCSGC	1 cut(s)	125
TfiI	GAWTC	1 cut(s)	202
TspDTI	ATGAA	1 cut(s)	161
XcmI	CCANNNNNNNNNTGG	1 cut(s)	29
XhoI	CTCGAG	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.