Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002264

Physical Location & Seq

Genomic Coordinates Reverse (-)

11509602 .. 11510635

Gene Structure 1034 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g18081.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGTTCAACCTTGTGCACCCTGTGATTTCTGGTATACTAACGATTTTTACCTCAGAACTCCCAAGAAAGATGATCTCAAATTTTGTTGGTCTTTTCGGCTTCTTTGAAAGAAAAGAAGACACAGCTGGAGATCACCACTACAAAAAAACCGATCCTAAACCAGAAGTTTTGGAGAAGAACCTCGAGCGCCCTCAATCTCCTGAAACACAAGTAGGCAACGATGAAGAGAAACCAAAACGTATGTTTTGTACGTTCTGTAGTGAGAATGGTGATCACGAAACTATAGATTGCCCGGACAAACCAGAGGGATATGTAACTCTTTGTAGGATTTGTGATGATGGTCCATGTGAAAACGAGGATGATCTAGATCACAAGGAAGAACATTATGAGTATCTCATGCGTTGTAAGTATTGTCACGCTATTGGTGAACACTGGGAAGATAGTTGCCATATGGATTCCAGCGATGACGATTGCGACTTTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

162

Amino Acids

18.73

Weight (kDa)

4.63

Isoelectric Point (pI)

48.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002264)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04712 FvH4_2g40191 FvH4_2g40203 FvH4_2g40210 FvH4_2g40220 FvH4_3g18081
rosa_chinensis	RchiOBHm_Chr1g0378061 RchiOBHm_Chr5g0003061 RchiOBHm_Chr5g0030501
rosa_laevigata	RLG00000031096 RLG00000031106 RLG00000031109
rosa_multiflora	Rmu_sc0000280.1_g000001 Rmu_sc0015917.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019880 Rroxscaffold_1G00019910 Rroxscaffold_1G00049800 Rroxscaffold_1G00072540 Rroxscaffold_1G00073090
rosa_rugosa	Rorug04G0396300 Rorug04G0396400 Rorug04G0396500 Rorug04G0396600 Rorug04G0401800 Rorug05G0117400 Rorug05G0334100 Rorug05G0334100
rosa_samantha	Rh5AG028100 Rh5AG028200 Rh5AG210200 Rh5AG396800 Rh5AG396900 Rh5BG028300 Rh5BG209400 Rh5BG408900 Rh5BG409100 Rh5CG027500 Rh5CG030600 Rh5CG030700 Rh5CG433600 Rh5CG433800
rosa_wichuraiana	Rw5G002290 Rw5G019200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	34
AclWI	GGATC	1 cut(s)	146
AcsI	RAATTY	1 cut(s)	79
AdeI	CACNNNGTG	1 cut(s)	22
AfaI	GTAC	1 cut(s)	250
AgsI	TTSAA	2 cut(s)	7, 107
AluBI	AGCT	1 cut(s)	125
AluI	AGCT	1 cut(s)	125
Alw21I	GWGCWC	1 cut(s)	18
Alw44I	GTGCAC	1 cut(s)	14
AlwI	GGATC	1 cut(s)	146
Ama87I	CYCGRG	1 cut(s)	182
ApaLI	GTGCAC	1 cut(s)	14
ApoI	RAATTY	1 cut(s)	79
AspLEI	GCGC	1 cut(s)	189
AspS9I	GGNCC	1 cut(s)	341
AsuC2I	CCSGG	1 cut(s)	293
AsuHPI	GGTGA	3 cut(s)	125, 281, 437
AvaI	CYCGRG	1 cut(s)	182
AvaII	GGWCC	1 cut(s)	341
BaeGI	GKGCMC	1 cut(s)	18
BbsI	GAAGAC	1 cut(s)	123
Bbv12I	GWGCWC	1 cut(s)	18
BccI	CCATC	1 cut(s)	332
BclI	TGATCA	1 cut(s)	271
BcnI	CCSGG	1 cut(s)	293
BfaI	CTAG	1 cut(s)	365
BfmI	CTRYAG	2 cut(s)	256, 282
BfoI	RGCGCY	1 cut(s)	190
Bme1390I	CCNGG	1 cut(s)	293
Bme18I	GGWCC	1 cut(s)	341
BmeT110I	CYCGRG	1 cut(s)	182
BmgT120I	GGNCC	1 cut(s)	341
BmrFI	CCNGG	1 cut(s)	293
BmrI	ACTGGG	1 cut(s)	442
BmuI	ACTGGG	1 cut(s)	442
BpiI	GAAGAC	1 cut(s)	123
BpmI	CTGGAG	1 cut(s)	147
BpuMI	CCSGG	1 cut(s)	293
BsaBI	GATNNNNATC	1 cut(s)	366
Bse1I	ACTGG	1 cut(s)	437
Bse8I	GATNNNNATC	1 cut(s)	366
BseGI	GGATG	1 cut(s)	364
BseJI	GATNNNNATC	1 cut(s)	366
BseMII	CTCAG	1 cut(s)	66
BseNI	ACTGG	1 cut(s)	437
BseSI	GKGCMC	1 cut(s)	18
BsiHKAI	GWGCWC	1 cut(s)	18
BsiHKCI	CYCGRG	1 cut(s)	182
BsiSI	CCGG	1 cut(s)	293
BsoBI	CYCGRG	1 cut(s)	182
Bsp1286I	GDGCHC	1 cut(s)	18
Bsp143I	GATC	6 cut(s)	72, 130, 151, 271, 361, 367
BspCNI	CTCAG	1 cut(s)	65
BspPI	GGATC	1 cut(s)	146
BsrI	ACTGG	1 cut(s)	437
BssMI	GATC	6 cut(s)	72, 130, 151, 271, 361, 367
BssNAI	GTATAC	1 cut(s)	35
Bst1107I	GTATAC	1 cut(s)	35
Bst6I	CTCTTC	1 cut(s)	219
BstDEI	CTNAG	1 cut(s)	52
BstF5I	GGATG	1 cut(s)	364
BstH2I	RGCGCY	1 cut(s)	190
BstHHI	GCGC	1 cut(s)	189
BstKTI	GATC	6 cut(s)	75, 133, 154, 274, 364, 370
BstMBI	GATC	6 cut(s)	72, 130, 151, 271, 361, 367
BstSCI	CCNGG	1 cut(s)	291
BstSFI	CTRYAG	2 cut(s)	256, 282
BstSLI	GKGCMC	1 cut(s)	18
BstV2I	GAAGAC	1 cut(s)	123
BstZ17I	GTATAC	1 cut(s)	35
BtgZI	GCGATG	1 cut(s)	477
BtsCI	GGATG	1 cut(s)	364
BtsIMutI	CAGTG	1 cut(s)	430
CfoI	GCGC	1 cut(s)	189
Cfr13I	GGNCC	1 cut(s)	341
Csp6I	GTAC	1 cut(s)	249
CviAII	CATG	2 cut(s)	345, 397
CviJI	RGCY	2 cut(s)	99, 125
CviKI_1	RGCY	2 cut(s)	99, 125
CviQI	GTAC	1 cut(s)	249
DdeI	CTNAG	1 cut(s)	52
DpnI	GATC	6 cut(s)	74, 132, 153, 273, 363, 369
DpnII	GATC	6 cut(s)	72, 130, 151, 271, 361, 367
DraIII	CACNNNGTG	1 cut(s)	22
Eam1104I	CTCTTC	1 cut(s)	219
EarI	CTCTTC	1 cut(s)	219
Eco47I	GGWCC	1 cut(s)	341
Eco88I	CYCGRG	1 cut(s)	182
FaeI	CATG	2 cut(s)	348, 400
FaiI	YATR	9 cut(s)	35, 242, 284, 312, 346, 387, 398, 450, 452
FatI	CATG	2 cut(s)	344, 396
FauNDI	CATATG	1 cut(s)	450
FbaI	TGATCA	1 cut(s)	271
FblI	GTMKAC	1 cut(s)	34
FokI	GGATG	1 cut(s)	371
FspBI	CTAG	1 cut(s)	365
GlaI	GCGC	1 cut(s)	188
GsuI	CTGGAG	1 cut(s)	147
HaeII	RGCGCY	1 cut(s)	190
HapII	CCGG	1 cut(s)	293
HhaI	GCGC	1 cut(s)	189
Hin1II	CATG	2 cut(s)	348, 400
Hin6I	GCGC	1 cut(s)	187
HinP1I	GCGC	1 cut(s)	187
HinfI	GANTC	1 cut(s)	455
HpaII	CCGG	1 cut(s)	293
HphI	GGTGA	3 cut(s)	125, 281, 437
Hpy166II	GTNNAC	3 cut(s)	16, 35, 428
Hpy188I	TCNGA	1 cut(s)	55
Hpy188III	TCNNGA	3 cut(s)	200, 275, 365
Hpy8I	GTNNAC	3 cut(s)	16, 35, 428
HpyCH4IV	ACGT	2 cut(s)	238, 251
HpyCH4V	TGCA	1 cut(s)	16
HpyF3I	CTNAG	1 cut(s)	52
HpySE526I	ACGT	2 cut(s)	238, 251
Hsp92II	CATG	2 cut(s)	348, 400
HspAI	GCGC	1 cut(s)	187
Ksp22I	TGATCA	1 cut(s)	271
Kzo9I	GATC	6 cut(s)	72, 130, 151, 271, 361, 367
LpnPI	CCDG	9 cut(s)	15, 33, 111, 174, 213, 306, 315, 418, 472
MaeI	CTAG	1 cut(s)	365
MaeII	ACGT	2 cut(s)	238, 251
MaeIII	GTNAC	2 cut(s)	313, 413
MalI	GATC	6 cut(s)	74, 132, 153, 273, 363, 369
MboI	GATC	6 cut(s)	72, 130, 151, 271, 361, 367
MboII	GAAGA	5 cut(s)	128, 187, 236, 389, 449
MhlI	GDGCHC	1 cut(s)	18
MluCI	AATT	2 cut(s)	79, 481
MnlI	CCTC	5 cut(s)	61, 191, 201, 298, 349
MseI	TTAA	1 cut(s)	480
MspA1I	CMGCKG	1 cut(s)	125
MspI	CCGG	1 cut(s)	293
MspR9I	CCNGG	1 cut(s)	293
NciI	CCSGG	1 cut(s)	293
NdeI	CATATG	1 cut(s)	450
NdeII	GATC	6 cut(s)	72, 130, 151, 271, 361, 367
NlaIII	CATG	2 cut(s)	348, 400
NmuCI	GTSAC	1 cut(s)	413
PaeR7I	CTCGAG	1 cut(s)	182
PfeI	GAWTC	1 cut(s)	455
PspPI	GGNCC	1 cut(s)	341
PspXI	VCTCGAGB	1 cut(s)	182
PvuII	CAGCTG	1 cut(s)	125
RsaI	GTAC	1 cut(s)	250
RsaNI	GTAC	1 cut(s)	249
SaqAI	TTAA	1 cut(s)	480
Sau3AI	GATC	6 cut(s)	72, 130, 151, 271, 361, 367
Sau96I	GGNCC	1 cut(s)	341
ScrFI	CCNGG	1 cut(s)	293
SduI	GDGCHC	1 cut(s)	18
SetI	ASST	6 cut(s)	12, 53, 127, 183, 241, 254
SfcI	CTRYAG	2 cut(s)	256, 282
Sfr274I	CTCGAG	1 cut(s)	182
SinI	GGWCC	1 cut(s)	341
SlaI	CTCGAG	1 cut(s)	182
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
Sse9I	AATT	2 cut(s)	79, 481
SspMI	CTAG	1 cut(s)	365
StyD4I	CCNGG	1 cut(s)	291
TaiI	ACGT	2 cut(s)	241, 254
TaqI	TCGA	1 cut(s)	183
TasI	AATT	2 cut(s)	79, 481
TfiI	GAWTC	1 cut(s)	455
Tru1I	TTAA	1 cut(s)	480
Tru9I	TTAA	1 cut(s)	480
TscAI	CASTG	1 cut(s)	437
TseFI	GTSAC	1 cut(s)	413
Tsp45I	GTSAC	1 cut(s)	413
TspDTI	ATGAA	1 cut(s)	237
TspRI	CASTG	1 cut(s)	437
VneI	GTGCAC	1 cut(s)	14
VpaK11BI	GGWCC	1 cut(s)	341
XapI	RAATTY	1 cut(s)	79
XbaI	TCTAGA	1 cut(s)	364
XhoI	CTCGAG	1 cut(s)	182
XmiI	GTMKAC	1 cut(s)	34
XspI	CTAG	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.